Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04256 Brassica carinata HOM05D006043 ORTHO05D007309 2.9e-79 298.5 152 100.0
C03p43400 Brassica napus HOM05D006043 ORTHO05D007309 7.9e-77 290.4 152 97.4
BraA03t12747Z Brassica rapa HOM05D006043 ORTHO05D007309 2.1e-74 282.3 152 95.4
BcaB03g11578 Brassica carinata HOM05D006043 ORTHO05D007309 2.0e-72 275.8 150 94.0
A03p35730 Brassica napus HOM05D006043 ORTHO05D007309 2.9e-71 271.9 143 97.2
BolC3t16611H Brassica oleracea HOM05D006043 ORTHO05D007309 1.2e-69 266.5 153 91.5
A05p39030 Brassica napus HOM05D006043 ORTHO05D007309 2.0e-64 249.2 155 85.2
BraA05t22694Z Brassica rapa HOM05D006043 ORTHO05D007309 7.6e-64 247.3 154 85.1
Sp3g08330 Schrenkiella parvula HOM05D006043 ORTHO05D007309 3.8e-63 245.0 154 81.8
BolC8t51238H Brassica oleracea HOM05D006043 ORTHO05D007309 8.5e-63 243.8 138 89.9
C05p58050 Brassica napus HOM05D002004 ORTHO05D002089 1.9e-62 242.7 154 82.5
BolC5t34462H Brassica oleracea HOM05D006043 ORTHO05D007309 1.9e-62 242.7 154 82.5
Carub.0003s0912 Capsella rubella HOM05D006043 ORTHO05D007309 7.9e-61 237.3 149 80.5
AT3G10020 Arabidopsis thaliana HOM05D006043 ORTHO05D007309 1.0e-60 236.9 147 81.6
BcaC05g29726 Brassica carinata HOM05D006043 ORTHO05D007309 3.0e-60 235.3 156 80.8
AL3G21330 Arabidopsis lyrata HOM05D006043 ORTHO05D007309 1.9e-59 232.6 149 79.9
CARHR084520 Cardamine hirsuta HOM05D006043 ORTHO05D007309 3.3e-59 231.9 146 80.1
Thhalv10021699m.g Eutrema salsugineum HOM05D006043 ORTHO05D007309 2.2e-58 229.2 150 79.3
Aa31LG3G2550 Aethionema arabicum HOM05D006043 ORTHO05D007309 2.4e-57 225.7 147 76.9
C08p36560 Brassica napus HOM05D006043 ORTHO05D007309 5.5e-46 188.0 104 89.4
BcaC03g16179 Brassica carinata HOM05D006043 ORTHO05D007309 1.1e-43 180.3 104 86.5
C02p39530 Brassica napus HOM05D006043 ORTHO05D007309 3.3e-43 178.7 104 85.6
BolC2t09966H Brassica oleracea HOM05D006043 ORTHO05D007309 3.3e-43 178.7 104 85.6
Cpa.g.sc5.89 Carica papaya HOM05D006043 ORTHO05D007309 1.5e-38 163.3 146 60.3
THA.LOC104816380 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 1.5e-38 163.3 133 63.9
Ciclev10013017m.g Citrus clementina HOM05D006043 ORTHO05D007309 4.7e-37 158.3 149 59.1
Manes.08G019800 Manihot esculenta HOM05D006043 ORTHO05D007309 6.7e-36 154.5 149 58.4
Atru.chr8.1654 Acer truncatum HOM05D006043 ORTHO05D007309 1.2e-35 153.7 148 61.5
COL.COLO4_29832 Corchorus olitorius HOM05D006043 ORTHO05D007309 1.2e-35 153.7 147 61.9
Sc07g0005350 Simmondsia chinensis HOM05D006043 ORTHO05D007309 9.7e-35 150.6 145 58.6
Glyma.03G190100 Glycine max HOM05D006043 ORTHO05D007309 2.2e-34 149.4 145 59.3
Lj1g0027910 Lotus japonicus HOM05D006043 ORTHO05D007309 3.1e-33 145.6 144 56.9
Prupe.7G119300 Prunus persica HOM05D006043 ORTHO05D007309 4.1e-33 145.2 146 60.3
Gorai.006G158600 Gossypium raimondii HOM05D006043 ORTHO05D007309 5.3e-33 144.8 148 56.1
FAN02G0054 Fragaria x ananassa HOM05D006043 ORTHO05D007309 7.0e-33 144.4 147 59.2
EL10Ac7g17005 Beta vulgaris HOM05D006043 ORTHO05D007309 1.6e-32 143.3 146 52.7
Duzib106G1072 Durio zibethinus HOM05D006043 ORTHO05D007309 1.6e-32 143.3 147 57.8
MD14G1014200 Malus domestica HOM05D006043 ORTHO05D007309 1.6e-32 143.3 151 57.6
Medtr7g103520 Medicago truncatula HOM05D006043 ORTHO05D007309 1.6e-32 143.3 144 56.2
Rhsim06G0171100 Rhododendron simsii HOM05D006043 ORTHO05D007309 1.6e-32 143.3 147 54.4
VMungo1383G3657 Vigna mungo HOM05D006043 ORTHO05D007309 2.7e-32 142.5 144 55.6
MELO3C009427.2 Cucumis melo HOM05D006043 ORTHO05D007309 4.5e-32 141.7 149 53.7
Gohir.D09G138000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 4.5e-32 141.7 148 55.4
Potri.013G014300 Populus trichocarpa HOM05D006043 ORTHO05D007309 4.5e-32 141.7 154 59.1
RcHm_v2.0_Chr3g0471911 Rosa chinensis HOM05D006043 ORTHO05D007309 4.5e-32 141.7 148 58.8
CsaV3_3G036730 Cucumis sativus L. HOM05D006043 ORTHO05D007309 5.9e-32 141.4 144 54.9
Glyma.19G190400 Glycine max HOM05D006043 ORTHO05D007309 5.9e-32 141.4 144 54.9
Gohir.A04G066428 Gossypium hirsutum HOM05D006043 ORTHO05D007309 5.9e-32 141.4 152 60.5
Lalb_Chr20g0112261 Lupinus albus HOM05D006043 ORTHO05D007309 5.9e-32 141.4 144 56.9
Gohir.D04G105000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 1.3e-31 140.2 152 59.9
Gorai.009G408700 Gossypium raimondii HOM05D006043 ORTHO05D007309 1.3e-31 140.2 152 59.9
vmacro12136 Vaccinium macrocarpon HOM05D006043 ORTHO05D007309 1.3e-31 140.2 149 56.4
CANSAT80G1206 Cannabis sativa HOM05D006043 ORTHO05D007309 2.2e-31 139.4 153 55.6
FvH4_6g17700 Fragaria vesca HOM05D006043 ORTHO05D007309 2.2e-31 139.4 147 59.2
Haze_19524 Corylus avellana HOM05D006043 ORTHO05D007309 2.9e-31 139.0 148 57.4
Eucgr.K02399 Eucalyptus grandis HOM05D006043 ORTHO05D007309 3.8e-31 138.7 147 56.5
Cfa016525 Carpinus fangiana HOM05D006043 ORTHO05D007309 5.0e-31 138.3 147 57.1
Eucgr.K02384 Eucalyptus grandis HOM05D006043 ORTHO05D007309 5.0e-31 138.3 147 56.5
MD12G1016000 Malus domestica HOM05D006043 ORTHO05D007309 6.5e-31 137.9 152 57.9
Eucgr.K02410 Eucalyptus grandis HOM05D006043 ORTHO05D007309 8.5e-31 137.5 147 55.8
ClCG10G019450 Citrullus lanatus HOM05D006043 ORTHO05D007309 2.5e-30 136.0 149 53.0
Peaxi162Scf00412g00073 Petunia axillaris HOM05D006043 ORTHO05D007309 3.2e-30 135.6 152 55.3
QL07p040748 Quercus lobata HOM05D006043 ORTHO05D007309 3.2e-30 135.6 152 54.6
Ca_08959_v3 Cicer arietinum L. HOM05D006043 ORTHO05D007309 4.2e-30 135.2 145 55.2
Eucgr.K02389 Eucalyptus grandis HOM05D006043 ORTHO05D007309 4.2e-30 135.2 147 55.1
Gohir.A09G136312 Gossypium hirsutum HOM05D006043 ORTHO05D007309 1.2e-29 133.7 158 51.3
CSS0040940 Camellia sinensis var. sinensis HOM05D006043 ORTHO05D007309 2.7e-29 132.5 151 51.7
Phvul.001G185700 Phaseolus vulgaris HOM05D006043 ORTHO05D007309 2.7e-29 132.5 144 52.1
PGSC0003DMG400002724 Solanum tuberosum HOM05D006043 ORTHO05D007309 4.7e-29 131.7 150 54.7
Dinv21268 Davidia involucrata HOM05D006043 ORTHO05D007309 1.0e-28 130.6 141 53.9
Eucgr.A01560 Eucalyptus grandis HOM05D006043 ORTHO05D007309 1.4e-28 130.2 129 52.7
TPR.G7024 Trifolium pratense HOM05D006043 ORTHO05D007309 1.4e-28 130.2 143 53.1
TWI53G1797 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 4.0e-28 128.6 105 64.8
Ah.08g211020 Amaranthus hybridus HOM05D006043 ORTHO05D007309 3.4e-27 125.6 149 48.3
Aqoxy1G00961 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 3.4e-27 125.6 150 51.3
CiPaw.10G004600 Carya illinoinensis HOM05D006043 ORTHO05D007309 4.4e-27 125.2 154 53.2
SGA_v2.0_scaffold40G15419 Striga asiatica HOM05D006043 ORTHO05D007309 4.4e-27 125.2 149 53.0
Cc06_g05110 Coffea canephora HOM05D006043 ORTHO05D007309 5.7e-27 124.8 147 50.3
HanXRQChr09g0259401 Helianthus annuus HOM05D006043 ORTHO05D007309 9.8e-27 124.0 147 49.7
PSO384G2483 Papaver somniferum HOM05D006043 ORTHO05D007309 2.8e-26 122.5 159 49.7
Nn2g13971 Nelumbo nucifera HOM05D006043 ORTHO05D007309 3.7e-26 122.1 109 55.0
Zm00001eb406490 Zea mays HOM05D006043 ORTHO05D007309 3.7e-26 122.1 141 52.5
Os11g0149200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 4.8e-26 121.7 139 53.2
Oeu030483.1 Olea europaea HOM05D006043 ORTHO05D007309 1.1e-25 120.6 149 49.7
Duzib093G0521 Durio zibethinus HOM05D006043 ORTHO05D007309 1.8e-25 119.8 147 54.4
CAN.G824.34 Capsicum annuum HOM05D006043 ORTHO05D007309 2.4e-25 119.4 149 49.7
Os12g0147200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 4.1e-25 118.6 134 51.5
MBI01_g32535_MAGBIO Magnolia biondii HOM05D006043 ORTHO05D007309 7.0e-25 117.9 135 52.6
Cc00_g32800 Coffea canephora HOM05D006043 ORTHO05D007309 1.6e-24 116.7 145 51.0
PGR004G1627 Punica granatum HOM05D006043 ORTHO05D007309 2.0e-24 116.3 132 53.0
Psat3g036320 Pisum sativum HOM05D006043 ORTHO05D007309 3.5e-24 115.5 106 55.7
Nitab4.5_0010125g0040 Nicotiana tabacum HOM05D006043 ORTHO05D007309 5.9e-24 114.8 129 51.9
Lsat_1_v5_gn_2_22321 Lactuca sativa HOM05D006043 ORTHO05D007309 2.9e-23 112.5 136 50.0
Sed0027852 Sechium edule HOM05D006043 ORTHO05D007309 2.9e-23 112.5 143 47.6
Solyc09g008970.1 Solanum lycopersicum HOM05D006043 ORTHO05D007309 2.9e-23 112.5 151 52.3
THA.LOC104823222 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 2.9e-23 112.5 74 73.0
ECA126G0006 Erigeron canadensis HOM05D006043 ORTHO05D007309 2.5e-22 109.4 105 51.4
Nn6g35076 Nelumbo nucifera HOM05D006043 ORTHO05D007309 2.5e-22 109.4 131 52.7
DCAR_009167 Daucus carota HOM05D006043 ORTHO05D007309 7.2e-22 107.8 141 49.6
Sopen09g003730 Solanum pennellii HOM05D006043 ORTHO05D007309 7.2e-22 107.8 149 49.0
Cc00_g05260 Coffea canephora HOM05D006043 ORTHO05D007309 1.6e-21 106.7 145 49.7
SalBow3G1044 Salvia bowleyana HOM05D006043 ORTHO05D007309 8.0e-21 104.4 147 46.9
Sopen09g003740 Solanum pennellii HOM05D006043 ORTHO05D007309 8.0e-21 104.4 146 45.9
Oeu040545.1 Olea europaea HOM05D006043 ORTHO05D007309 3.0e-20 102.4 148 47.3
Nitab4.5_0010125g0030 Nicotiana tabacum HOM05D006043 ORTHO05D007309 3.4e-19 99.0 147 46.3
Peaxi162Scf00412g00063 Petunia axillaris HOM05D006043 ORTHO05D007309 3.4e-19 99.0 147 46.3
Solyc09g008980.2 Solanum lycopersicum HOM05D006043 ORTHO05D007309 3.4e-19 99.0 146 45.2
PGSC0003DMG400002723 Solanum tuberosum HOM05D006043 ORTHO05D007309 3.4e-19 99.0 146 44.5
Thecc.05G079900 Theobroma cacao HOM05D006043 ORTHO05D007309 4.4e-19 98.6 146 48.6
Nitab4.5_0001922g0090 Nicotiana tabacum HOM05D006043 ORTHO05D007309 2.2e-18 96.3 116 50.0
Lj2P127T74 Lonicera japonica HOM05D006043 ORTHO05D007309 3.1e-17 92.4 134 46.3
Aqoxy2G01470 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 4.1e-17 92.0 129 47.3
TWI13G0012 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 4.1e-17 92.0 108 55.6
TWI74G0769 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 4.1e-17 92.0 108 55.6
HPP92_021571 Vanilla planifolia HOM05D006043 ORTHO05D007309 4.1e-17 92.0 132 44.7
AUR62033593 Chenopodium quinoa HOM05D006043 ORTHO05D007309 2.0e-16 89.7 140 43.6
Lj4P368T6 Lonicera japonica HOM05D006043 ORTHO05D007309 6.6e-15 84.7 83 56.6
Prupe.7G091800 Prunus persica HOM05D006043 ORTHO05D007309 9.5e-14 80.9 87 59.8
TAR334G0001 Trochodendron aralioides HOM05D006043 ORTHO05D007309 2.0e-11 73.2 84 59.5
TAR369G1076 Trochodendron aralioides HOM05D006043 ORTHO05D007309 2.0e-11 73.2 84 59.5
C04p63450 Brassica napus HOM05D006043 ORTHO05D007309 4.4e-11 72.0 47 78.7
C07p58330 Brassica napus HOM05D006043 ORTHO05D007309 4.4e-11 72.0 47 78.7
AUR62037886 Chenopodium quinoa HOM05D006043 ORTHO05D007309 4.9e-10 68.6 152 33.6
SMO358G0245 Selaginella moellendorffii HOM05D006043 ORTHO05D007309 2.3e-07 59.7 100 41.0
SEGI_20897 Sequoiadendron giganteum HOM05D006043 ORTHO05D007309 3.9e-07 58.9 101 44.6
SMO347G0034 Selaginella moellendorffii HOM05D006043 ORTHO05D007309 3.3e-06 55.8 100 36.0


User provided reference genes

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