Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04222 Brassica carinata HOM05D007866 ORTHO05D003871 1.1e-56 223.0 112 100.0
C03p43730 Brassica napus HOM05D007866 ORTHO05D003871 2.0e-53 212.2 108 98.1
BraA03t12778Z Brassica rapa HOM05D007866 ORTHO05D003871 3.0e-49 198.4 112 90.2
BcaB04g18538 Brassica carinata HOM05D007866 ORTHO05D003871 1.2e-45 186.4 111 86.5
BcaB04g18539 Brassica carinata HOM05D007866 ORTHO05D003871 1.2e-45 186.4 111 86.5
Thhalv10021969m.g Eutrema salsugineum HOM05D007866 ORTHO05D003871 6.1e-42 174.1 114 80.7
AL70U10030 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 6.3e-39 164.1 113 76.1
AL3G20400 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 8.2e-39 163.7 113 76.1
AT3G09280 Arabidopsis thaliana HOM05D007866 ORTHO05D003871 4.5e-37 157.9 113 73.5
BolC3t16642H Brassica oleracea HOM05D007866 ORTHO05D003871 4.5e-37 157.9 109 78.0
CARHR083640 Cardamine hirsuta HOM05D007866 ORTHO05D003871 1.0e-36 156.8 113 73.5
Sp3g07650 Schrenkiella parvula HOM05D007866 ORTHO05D003871 2.2e-36 155.6 113 75.2
Carub.0003s0839 Capsella rubella HOM05D007866 ORTHO05D003871 4.4e-32 141.4 113 67.3
THA.LOC104816660 Tarenaya hassleriana HOM05D007866 ORTHO05D003871 2.0e-21 105.9 95 64.2
RcHm_v2.0_Chr3g0464671 Rosa chinensis HOM05D007866 ORTHO05D003871 3.5e-13 78.6 126 45.2
MD12G1154500 Malus domestica HOM05D007866 ORTHO05D003871 1.0e-12 77.0 102 42.2
Haze_20881 Corylus avellana HOM05D007866 ORTHO05D003871 5.0e-12 74.7 65 56.9
Haze_20890 Corylus avellana HOM05D007866 ORTHO05D003871 5.0e-12 74.7 65 56.9
Prupe.6G264300 Prunus persica HOM05D007866 ORTHO05D003871 5.0e-12 74.7 80 51.2
Sed0027672 Sechium edule HOM05D007866 ORTHO05D003871 5.0e-12 74.7 102 46.1
Potri.006G092200 Populus trichocarpa HOM05D007866 ORTHO05D003871 4.2e-11 71.6 40 85.0
COL.COLO4_14698 Corchorus olitorius HOM05D007866 ORTHO05D003871 5.5e-11 71.2 88 48.9
Lj3g0011949 Lotus japonicus HOM05D007866 ORTHO05D003871 7.2e-11 70.9 52 65.4
Gohir.A01G221050 Gossypium hirsutum HOM05D007866 ORTHO05D003871 9.4e-11 70.5 39 76.9
Gohir.D01G209950 Gossypium hirsutum HOM05D007866 ORTHO05D003871 9.4e-11 70.5 39 76.9
Gorai.002G255600 Gossypium raimondii HOM05D007866 ORTHO05D003871 9.4e-11 70.5 39 76.9
QL07p028342 Quercus lobata HOM05D007866 ORTHO05D003871 1.2e-10 70.1 90 46.7
FAN05G4429 Fragaria x ananassa HOM05D007866 ORTHO05D003871 2.7e-10 68.9 117 40.2
Sabra16G0103600 Salix brachista HOM05D007866 ORTHO05D003871 2.7e-10 68.9 55 61.8
Gorai.006G169200 Gossypium raimondii HOM05D007866 ORTHO05D003871 4.7e-10 68.2 51 60.8
SalBow4G1352 Salvia bowleyana HOM05D007866 ORTHO05D003871 4.7e-10 68.2 81 46.9
Atru.chr8.2088 Acer truncatum HOM05D007866 ORTHO05D003871 6.1e-10 67.8 58 51.7
CiPaw.09G201000 Carya illinoinensis HOM05D007866 ORTHO05D003871 6.1e-10 67.8 57 59.6
Gohir.A09G152500 Gossypium hirsutum HOM05D007866 ORTHO05D003871 6.1e-10 67.8 42 71.4
Solyc09g011430.1 Solanum lycopersicum HOM05D007866 ORTHO05D003871 6.1e-10 67.8 57 52.6
Thecc.05G029400 Theobroma cacao HOM05D007866 ORTHO05D003871 6.1e-10 67.8 93 44.1
MSTRG.6540 Avicennia marina HOM05D007156 ORTHO05D003871 1.0e-09 67.0 78 43.6
CSS0047873 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 1.0e-09 67.0 43 74.4
Ciclev10013493m.g Citrus clementina HOM05D007866 ORTHO05D003871 1.0e-09 67.0 72 48.6
FAN09G3925 Fragaria x ananassa HOM05D007866 ORTHO05D003871 1.0e-09 67.0 107 39.3
Lalb_Chr07g0193271 Lupinus albus HOM05D007866 ORTHO05D003871 1.0e-09 67.0 79 55.7
Peaxi162Scf00014g00168 Petunia axillaris HOM05D007866 ORTHO05D003871 1.0e-09 67.0 41 63.4
FvH4_6g12750 Fragaria vesca HOM05D007866 ORTHO05D003871 1.4e-09 66.6 109 42.2
FAN14G2102 Fragaria x ananassa HOM05D007866 ORTHO05D003871 1.4e-09 66.6 109 42.2
Oeu030552.1 Olea europaea HOM05D007866 ORTHO05D003871 1.4e-09 66.6 55 58.2
Nitab4.5_0009996g0020 Nicotiana tabacum HOM05D007156 ORTHO05D003871 1.8e-09 66.2 84 42.9
Manes.09G098200 Manihot esculenta HOM05D007866 ORTHO05D003871 3.0e-09 65.5 97 43.3
Sopen09g006160 Solanum pennellii HOM05D007866 ORTHO05D003871 3.0e-09 65.5 37 70.3
Migut.M00380 Erythranthe guttata HOM05D007156 ORTHO05D003871 4.0e-09 65.1 65 52.3
arahy.Tifrunner.gnm1.ann1.ABE34K Arachis hypogaea HOM05D007156 ORTHO05D003871 5.2e-09 64.7 60 56.7
Gohir.D09G148200 Gossypium hirsutum HOM05D007866 ORTHO05D003871 5.2e-09 64.7 143 38.5
Psat7g241400 Pisum sativum HOM05D007866 ORTHO05D003871 5.2e-09 64.7 54 57.4
PGSC0003DMG400037339 Solanum tuberosum HOM05D007866 ORTHO05D003871 6.8e-09 64.3 46 56.5
TPR.G32547 Trifolium pratense HOM05D007866 ORTHO05D003871 6.8e-09 64.3 91 40.7
Phvul.005G111100 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 8.8e-09 63.9 75 53.3
TAR633G1059 Trochodendron aralioides HOM05D007866 ORTHO05D003871 8.8e-09 63.9 39 76.9
CsaV3_4G025580 Cucumis sativus L. HOM05D007866 ORTHO05D003871 1.2e-08 63.5 55 60.0
Duzib128G0987 Durio zibethinus HOM05D007866 ORTHO05D003871 1.2e-08 63.5 70 51.4
VMungo0331G0444 Vigna mungo HOM05D007866 ORTHO05D003871 1.2e-08 63.5 41 73.2
Eucgr.B02728 Eucalyptus grandis HOM05D007866 ORTHO05D003871 1.5e-08 63.2 54 59.3
TAR271G0004 Trochodendron aralioides HOM05D007156 ORTHO05D003871 1.5e-08 63.2 108 40.7
MELO3C003184.2 Cucumis melo HOM05D007866 ORTHO05D003871 2.6e-08 62.4 68 50.0
Nitab4.5_0000362g0160 Nicotiana tabacum HOM05D007866 ORTHO05D003871 2.6e-08 62.4 36 69.4
Sopen07g026540 Solanum pennellii HOM05D007156 ORTHO05D003871 2.6e-08 62.4 87 49.4
Actinidia29169 Actinidia chinensis HOM05D007866 ORTHO05D003871 4.4e-08 61.6 85 42.4
CSS0026310 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 4.4e-08 61.6 45 71.1
Hma1.2p1_0712F.1_g207550 Hydrangea macrophylla HOM05D007156 ORTHO05D003871 4.4e-08 61.6 73 46.6
Phvul.011G107900 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 5.7e-08 61.2 65 44.6
Potri.016G103700 Populus trichocarpa HOM05D007866 ORTHO05D003871 5.7e-08 61.2 39 69.2
TAR633G1409 Trochodendron aralioides HOM05D007866 ORTHO05D003871 5.7e-08 61.2 48 66.7
arahy.Tifrunner.gnm1.ann1.UGPP85 Arachis hypogaea HOM05D007866 ORTHO05D003871 7.5e-08 60.8 36 75.0
PGR031G1324 Punica granatum HOM05D007866 ORTHO05D003871 7.5e-08 60.8 76 43.4
EL10Ac7g16230 Beta vulgaris HOM05D007866 ORTHO05D003871 9.8e-08 60.5 36 69.4
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 9.8e-08 60.5 40 72.5
Phvul.010G009300 Phaseolus vulgaris HOM05D007866 ORTHO05D003871 9.8e-08 60.5 48 56.2
CAN.G86.35 Capsicum annuum HOM05D007156 ORTHO05D003871 1.3e-07 60.1 60 51.7
Glyma.03G073100 Glycine max HOM05D007866 ORTHO05D003871 1.3e-07 60.1 77 45.5
Glyma.06G301200 Glycine max HOM05D007156 ORTHO05D003871 1.3e-07 60.1 87 42.5
VMungo1080G0311 Vigna mungo HOM05D007156 ORTHO05D003871 1.3e-07 60.1 75 48.0
Nitab4.5_0008116g0010 Nicotiana tabacum HOM05D007866 ORTHO05D003871 1.7e-07 59.7 63 49.2
QL08p034497 Quercus lobata HOM05D007156 ORTHO05D003871 1.7e-07 59.7 70 48.6
Lj3g0000666 Lotus japonicus HOM05D007156 ORTHO05D003871 2.2e-07 59.3 66 53.0
Manes.12G077701 Manihot esculenta HOM05D007156 ORTHO05D003871 2.2e-07 59.3 55 58.2
Sed0007405 Sechium edule HOM05D007156 ORTHO05D003871 2.8e-07 58.9 93 38.7
ClCG04G007660 Citrullus lanatus HOM05D007866 ORTHO05D003871 3.7e-07 58.5 42 66.7
Nn2g11287 Nelumbo nucifera HOM05D007156 ORTHO05D003871 3.7e-07 58.5 93 31.2
Medtr4g019600 Medicago truncatula HOM05D007866 ORTHO05D003871 4.8e-07 58.2 100 40.0
VMungo1127G0041 Vigna mungo HOM05D007156 ORTHO05D003871 4.8e-07 58.2 65 43.1
Lsat_1_v5_gn_8_84120 Lactuca sativa HOM05D007866 ORTHO05D003871 6.3e-07 57.8 74 39.2
PGSC0003DMG400026188 Solanum tuberosum HOM05D007156 ORTHO05D003871 6.3e-07 57.8 86 39.5
Medtr0945s0020 Medicago truncatula HOM05D007156 ORTHO05D003871 8.3e-07 57.4 60 51.7
Glyma.12G103200 Glycine max HOM05D007156 ORTHO05D003871 1.1e-06 57.0 88 39.8
MBI18_g20355_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.1e-06 57.0 53 58.5
Peaxi162Scf00012g00273 Petunia axillaris HOM05D007156 ORTHO05D003871 1.1e-06 57.0 76 48.7
Atru.chr6.3108 Acer truncatum HOM05D007156 ORTHO05D003871 1.4e-06 56.6 72 44.4
ATR0804G053 Amborella trichopoda HOM05D007156 ORTHO05D003871 1.4e-06 56.6 104 39.4
Potri.013G152300 Populus trichocarpa HOM05D007156 ORTHO05D003871 1.4e-06 56.6 56 50.0
Solyc07g052990.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 1.4e-06 56.6 79 44.3
MBI02_g42365_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.8e-06 56.2 40 67.5
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.8e-06 56.2 40 67.5
Sabra13G0122400 Salix brachista HOM05D007156 ORTHO05D003871 1.8e-06 56.2 60 51.7
PGSC0003DMG400013754 Solanum tuberosum HOM05D007156 ORTHO05D003871 1.8e-06 56.2 54 53.7
PGSC0003DMG400019193 Solanum tuberosum HOM05D007866 ORTHO05D003871 1.8e-06 56.2 64 46.9
TPR.G19047 Trifolium pratense HOM05D007156 ORTHO05D003871 1.8e-06 56.2 72 43.1
Lalb_Chr24g0393601 Lupinus albus HOM05D007156 ORTHO05D003871 2.4e-06 55.8 106 38.7
Nitab4.5_0001302g0030 Nicotiana tabacum HOM05D007156 ORTHO05D003871 2.4e-06 55.8 74 40.5
CSS0000680 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 3.1e-06 55.5 70 47.1
Ciclev10017232m.g Citrus clementina HOM05D007156 ORTHO05D003871 3.1e-06 55.5 57 54.4
DCAR_010424 Daucus carota HOM05D007866 ORTHO05D003871 3.1e-06 55.5 91 37.4
Potri.019G125100 Populus trichocarpa HOM05D007156 ORTHO05D003871 3.1e-06 55.5 74 47.3
Sabra19G0123400 Salix brachista HOM05D007156 ORTHO05D003871 3.1e-06 55.5 84 44.0
Sabra19G0131200 Salix brachista HOM05D007156 ORTHO05D003871 3.1e-06 55.5 38 68.4
Solyc12g005690.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 3.1e-06 55.5 56 48.2
Haze_12992 Corylus avellana HOM05D007156 ORTHO05D003871 4.1e-06 55.1 59 50.8
Prupe.3G223500 Prunus persica HOM05D007156 ORTHO05D003871 4.1e-06 55.1 55 52.7
Cfa014479 Carpinus fangiana HOM05D007156 ORTHO05D003871 5.4e-06 54.7 59 50.8
Glyma.01G105300 Glycine max HOM05D007866 ORTHO05D003871 5.4e-06 54.7 77 44.2
Rhsim05G0199600 Rhododendron simsii HOM05D007866 ORTHO05D003871 5.4e-06 54.7 92 42.4
SGA_v2.0_scaffold70G23435 Striga asiatica HOM05D007156 ORTHO05D003871 5.4e-06 54.7 74 47.3
COL.COLO4_13040 Corchorus olitorius HOM05D007156 ORTHO05D003871 7.0e-06 54.3 72 44.4
Glyma.13G304200 Glycine max HOM05D007156 ORTHO05D003871 7.0e-06 54.3 68 45.6
Psat7g163320 Pisum sativum HOM05D007156 ORTHO05D003871 7.0e-06 54.3 66 42.4
Dinv17859 Davidia involucrata HOM05D001601 ORTHO05D006936 9.1e-06 53.9 43 53.5
MBI18_g38397_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 9.1e-06 53.9 60 45.0
MD09G1102100 Malus domestica HOM05D007156 ORTHO05D003871 9.1e-06 53.9 98 34.7


User provided reference genes

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