Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04210 Brassica carinata HOM05D000054 ORTHO05D024136 2.9e-30 134.4 62 100.0
BolC3t16656H Brassica oleracea HOM05D000054 ORTHO05D000286 2.9e-30 134.4 62 100.0
BraA03t12795Z Brassica rapa HOM05D000054 ORTHO05D000286 1.1e-29 132.5 62 98.4
C03p43880 Brassica napus HOM05D000054 ORTHO05D000286 1.5e-29 132.1 62 98.4
A03p36240 Brassica napus HOM05D000054 ORTHO05D000286 2.1e-28 128.3 62 96.8
BcaB04g18550 Brassica carinata HOM05D000054 ORTHO05D000286 1.0e-27 125.9 62 93.5
Thhalv10020896m.g Eutrema salsugineum HOM05D000054 ORTHO05D000286 1.4e-24 115.5 62 83.9
BNapus_Darmor_BZH_scaffold_167p00240 Brassica napus HOM05D000054 ORTHO05D000286 4.1e-24 114.0 62 82.3
BraA01t04322Z Brassica rapa HOM05D000054 ORTHO05D000286 4.1e-24 114.0 62 82.3
BolC1t05480H Brassica oleracea HOM05D000054 ORTHO05D000286 5.4e-24 113.6 62 80.6
Carub.0003s0814 Capsella rubella HOM05D000054 ORTHO05D000286 5.4e-24 113.6 62 82.3
BcaC09g48002 Brassica carinata HOM05D000054 ORTHO05D000286 9.2e-24 112.8 62 80.6
BcaC09g48047 Brassica carinata HOM05D000054 ORTHO05D000286 1.6e-23 112.1 62 80.6
Sp3g07430 Schrenkiella parvula HOM05D000054 ORTHO05D000286 5.9e-23 110.2 62 77.4
AT3G09010 Arabidopsis thaliana HOM05D000054 ORTHO05D000286 3.9e-22 107.5 62 75.8
CARHR083350 Cardamine hirsuta HOM05D000054 ORTHO05D000286 3.9e-22 107.5 62 77.4
AL3G20040 Arabidopsis lyrata HOM05D000054 ORTHO05D000286 1.5e-21 105.5 62 75.8
Aa31LG3G1550 Aethionema arabicum HOM05D000054 ORTHO05D000286 2.1e-20 101.7 62 72.6
THA.LOC104827045 Tarenaya hassleriana HOM05D000054 ORTHO05D000286 2.0e-18 95.1 62 69.4
TWI53G0942 Tripterygium wilfordii HOM05D000054 ORTHO05D000286 2.6e-18 94.7 62 67.7
GSVIVG01033973001 Vitis vinifera HOM05D000054 ORTHO05D000286 6.4e-17 90.1 62 64.5
Manes.09G104100 Manihot esculenta HOM05D000054 ORTHO05D000286 1.1e-16 89.4 62 66.1
Manes.08G091300 Manihot esculenta HOM05D000054 ORTHO05D000286 5.4e-16 87.0 62 66.1
Dinv05606 Davidia involucrata HOM05D000054 ORTHO05D000286 7.0e-16 86.7 60 65.0
Thecc.05G017700 Theobroma cacao HOM05D000054 ORTHO05D000286 9.2e-16 86.3 62 62.9
COL.COLO4_14548 Corchorus olitorius HOM05D000054 ORTHO05D000286 1.2e-15 85.9 63 63.5
Duzib093G1122 Durio zibethinus HOM05D000054 ORTHO05D000286 1.6e-15 85.5 62 62.9
Eucgr.A00508 Eucalyptus grandis HOM05D000054 ORTHO05D000286 4.6e-15 84.0 62 62.9
Actinidia05369 Actinidia chinensis HOM05D000054 ORTHO05D000286 6.0e-15 83.6 62 64.5
TAR623G1463 Trochodendron aralioides HOM05D000054 ORTHO05D000286 6.0e-15 83.6 62 58.1
CSS0003864 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D000286 1.0e-14 82.8 59 66.1
Solyc10g076760.3 Solanum lycopersicum HOM05D000054 ORTHO05D000286 1.3e-14 82.4 62 64.5
Sopen10g028400 Solanum pennellii HOM05D000054 ORTHO05D000286 1.3e-14 82.4 62 64.5
PGSC0003DMG400019125 Solanum tuberosum HOM05D000054 ORTHO05D000286 1.3e-14 82.4 62 64.5
vmacro08852 Vaccinium macrocarpon HOM05D000054 ORTHO05D000286 1.3e-14 82.4 62 62.9
Hma1.2p1_0362F.1_g136130 Hydrangea macrophylla HOM05D000054 ORTHO05D000286 1.7e-14 82.0 63 57.1
Cpa.g.sc163.18 Carica papaya HOM05D000054 ORTHO05D000286 3.9e-14 80.9 62 59.7
Peaxi162Scf00014g00613 Petunia axillaris HOM05D000054 ORTHO05D000286 6.6e-14 80.1 62 61.3
PGSC0003DMG400008493 Solanum tuberosum HOM05D000054 ORTHO05D000286 6.6e-14 80.1 62 62.9
Lsat_1_v5_gn_5_153021 Lactuca sativa HOM05D000054 ORTHO05D000286 8.6e-14 79.7 62 62.9
Gohir.D01G217800 Gossypium hirsutum HOM05D000054 ORTHO05D000286 1.1e-13 79.3 59 62.7
CAN.G1087.5 Capsicum annuum HOM05D000054 ORTHO05D000286 1.5e-13 79.0 62 61.3
Potri.016G114800 Populus trichocarpa HOM05D000054 ORTHO05D000286 1.9e-13 78.6 65 63.1
RcHm_v2.0_Chr3g0463281 Rosa chinensis HOM05D000054 ORTHO05D000286 1.9e-13 78.6 63 61.9
CANSAT35G0144 Cannabis sativa HOM05D000054 ORTHO05D000286 2.5e-13 78.2 62 58.1
FvH4_6g11600 Fragaria vesca HOM05D000054 ORTHO05D000286 2.5e-13 78.2 63 58.7
PGR031G1419 Punica granatum HOM05D000054 ORTHO05D000286 2.5e-13 78.2 62 58.1
FAN05G1625 Fragaria x ananassa HOM05D000054 ORTHO05D000286 3.3e-13 77.8 61 60.7
FAN14G3789 Fragaria x ananassa HOM05D000054 ORTHO05D000286 3.3e-13 77.8 61 60.7
Sabra16G0110700 Salix brachista HOM05D000054 ORTHO05D000286 3.3e-13 77.8 67 59.7
Solyc09g014470.2 Solanum lycopersicum HOM05D000054 ORTHO05D000286 3.3e-13 77.8 62 59.7
Sopen09g007270 Solanum pennellii HOM05D000054 ORTHO05D000286 4.3e-13 77.4 62 59.7
CAN.G772.5 Capsicum annuum HOM05D000054 ORTHO05D000286 5.6e-13 77.0 62 58.1
Nn2g13684 Nelumbo nucifera HOM05D000054 ORTHO05D000286 7.3e-13 76.6 62 54.8
Sc22g0002480 Simmondsia chinensis HOM05D000054 ORTHO05D000286 7.3e-13 76.6 62 58.1
Gorai.002G264200 Gossypium raimondii HOM05D000054 ORTHO05D000286 9.5e-13 76.3 59 61.0
Gorai.007G378900 Gossypium raimondii HOM05D000054 ORTHO05D000286 9.5e-13 76.3 62 56.5
Haze_20990 Corylus avellana HOM05D000054 ORTHO05D000286 1.6e-12 75.5 59 59.3
ClCG10G022050 Citrullus lanatus HOM05D000054 ORTHO05D000286 2.1e-12 75.1 62 58.1
FAN02G1849 Fragaria x ananassa HOM05D000054 ORTHO05D000286 2.1e-12 75.1 59 61.0
FAN14G3493 Fragaria x ananassa HOM05D000054 ORTHO05D000286 2.1e-12 75.1 59 61.0
HanXRQChr01g0005971 Helianthus annuus HOM05D000054 ORTHO05D000286 2.1e-12 75.1 62 56.5
Cfa017217 Carpinus fangiana HOM05D000054 ORTHO05D000286 2.8e-12 74.7 59 59.3
Gohir.D11G348600 Gossypium hirsutum HOM05D000054 ORTHO05D000286 2.8e-12 74.7 62 56.5
CsaV3_3G033880 Cucumis sativus L. HOM05D000054 ORTHO05D000286 3.6e-12 74.3 58 58.6
MELO3C009175.2 Cucumis melo HOM05D000054 ORTHO05D000286 6.2e-12 73.6 63 58.7
Glyma.07G148500 Glycine max HOM05D000054 ORTHO05D000286 6.2e-12 73.6 62 54.8
Nn2g11453 Nelumbo nucifera HOM05D000054 ORTHO05D000286 6.2e-12 73.6 62 59.7
Gohir.A11G329450 Gossypium hirsutum HOM05D000054 ORTHO05D000286 8.1e-12 73.2 62 54.8
Ciclev10011991m.g Citrus clementina HOM05D000054 ORTHO05D000286 1.1e-11 72.8 62 58.1
TAR633G1526 Trochodendron aralioides HOM05D000054 ORTHO05D000286 1.8e-11 72.0 63 54.0
DCAR_024026 Daucus carota HOM05D000054 ORTHO05D000286 2.3e-11 71.6 62 56.5
MD04G1150800 Malus domestica HOM05D000054 ORTHO05D000286 4.0e-11 70.9 64 56.2
THA.LOC104823288 Tarenaya hassleriana HOM05D000054 ORTHO05D000286 4.0e-11 70.9 38 84.2
GSVIVG01024760001 Vitis vinifera HOM05D000054 ORTHO05D000286 4.0e-11 70.9 52 67.3
Lalb_Chr19g0124701 Lupinus albus HOM05D000054 ORTHO05D000286 6.8e-11 70.1 62 53.2
Nitab4.5_0000119g0170 Nicotiana tabacum HOM05D000054 ORTHO05D000286 6.8e-11 70.1 41 75.6
Lj2A76T81 Lonicera japonica HOM05D000054 ORTHO05D000286 1.2e-10 69.3 47 66.0
SalBow5G0989 Salvia bowleyana HOM05D000054 ORTHO05D000286 1.2e-10 69.3 59 57.6
Actinidia29112 Actinidia chinensis HOM05D000054 ORTHO05D000286 1.5e-10 68.9 46 67.4
Nitab4.5_0009144g0010 Nicotiana tabacum HOM05D000054 ORTHO05D000286 1.5e-10 68.9 51 66.7
Cc06_g01470 Coffea canephora HOM05D000054 ORTHO05D000286 2.0e-10 68.6 60 56.7
Sabra06G0076300 Salix brachista HOM05D006730 ORTHO05D008189 2.0e-10 68.6 38 78.9
Ca_07627_v3 Cicer arietinum L. HOM05D000054 ORTHO05D000286 2.6e-10 68.2 62 54.8
SalBow5G0597 Salvia bowleyana HOM05D000054 ORTHO05D000286 2.6e-10 68.2 59 61.0
CiPaw.09G208200 Carya illinoinensis HOM05D000054 ORTHO05D000286 5.8e-10 67.0 62 51.6
Lj3C954T8 Lonicera japonica HOM05D000054 ORTHO05D000286 5.8e-10 67.0 38 78.9
vmacro20252 Vaccinium macrocarpon HOM05D000054 ORTHO05D000286 5.8e-10 67.0 38 78.9
TPR.G8138 Trifolium pratense HOM05D000054 ORTHO05D000286 7.5e-10 66.6 62 53.2
CSS0009206 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D000286 9.8e-10 66.2 37 78.4
Glyma.18G199600 Glycine max HOM05D000054 ORTHO05D000286 9.8e-10 66.2 62 53.2
MD05G1316300 Malus domestica HOM05D000054 ORTHO05D000286 9.8e-10 66.2 66 51.5
VMungo1383G3060 Vigna mungo HOM05D000054 ORTHO05D000286 1.3e-09 65.9 64 53.1
ECA248G0558 Erigeron canadensis HOM05D000054 ORTHO05D000286 2.2e-09 65.1 37 78.4
Migut.J00181 Erythranthe guttata HOM05D000054 ORTHO05D000286 2.2e-09 65.1 58 56.9
FAN05G4303 Fragaria x ananassa HOM05D000054 ORTHO05D000286 2.2e-09 65.1 37 78.4
FAN09G4468 Fragaria x ananassa HOM05D000054 ORTHO05D000286 2.2e-09 65.1 37 78.4
Lj1g0003345 Lotus japonicus HOM05D000054 ORTHO05D000286 2.2e-09 65.1 58 55.2
Psat3g129560 Pisum sativum HOM05D000054 ORTHO05D000286 2.2e-09 65.1 62 50.0
Lalb_Chr03g0043141 Lupinus albus HOM05D000054 ORTHO05D000286 2.9e-09 64.7 59 54.2
Aqoxy2G00923 Aquilegia oxysepala HOM05D000054 ORTHO05D000286 4.9e-09 63.9 62 50.0
Medtr7g068190 Medicago truncatula HOM05D000054 ORTHO05D000286 4.9e-09 63.9 62 51.6
arahy.Tifrunner.gnm1.ann1.LFQD4L Arachis hypogaea HOM05D000054 ORTHO05D000286 6.4e-09 63.5 59 49.2
arahy.Tifrunner.gnm1.ann1.LJP9Y0 Arachis hypogaea HOM05D000054 ORTHO05D000286 6.4e-09 63.5 59 49.2
MD03G1158500 Malus domestica HOM05D000054 ORTHO05D024136 1.1e-08 62.8 68 47.1
CiPaw.10G047000 Carya illinoinensis HOM05D000054 ORTHO05D000286 1.4e-08 62.4 62 50.0
MD10G1338200 Malus domestica HOM05D000054 ORTHO05D024136 1.4e-08 62.4 65 49.2
Prupe.4G043800 Prunus persica HOM05D000054 ORTHO05D000286 1.4e-08 62.4 64 48.4
Gorai.002G171400 Gossypium raimondii HOM05D000054 ORTHO05D000286 1.9e-08 62.0 34 76.5
Actinidia39449 Actinidia chinensis HOM05D000054 ORTHO05D000286 5.4e-08 60.5 60 46.7
Gohir.D07G198500 Gossypium hirsutum HOM05D000054 ORTHO05D000286 5.4e-08 60.5 38 68.4
PSO801G0501 Papaver somniferum HOM05D000054 ORTHO05D000286 5.4e-08 60.5 43 65.1
Phvul.008G105300 Phaseolus vulgaris HOM05D000054 ORTHO05D000286 5.4e-08 60.5 61 49.2
vmacro15894 Vaccinium macrocarpon HOM05D000054 ORTHO05D000286 5.4e-08 60.5 63 47.6
Medtr7g068150 Medicago truncatula HOM05D000054 ORTHO05D010126 7.1e-08 60.1 42 64.3
PSO339G3625 Papaver somniferum HOM05D000054 ORTHO05D000286 7.1e-08 60.1 43 65.1
Cfa000414 Carpinus fangiana HOM05D000054 ORTHO05D000286 9.2e-08 59.7 62 46.8
CiPaw.09G057300 Carya illinoinensis HOM05D000054 ORTHO05D000286 1.2e-07 59.3 62 46.8
CiPaw.09G176800 Carya illinoinensis HOM05D000054 ORTHO05D000286 1.6e-07 58.9 39 71.8
FvH4_3g04850 Fragaria vesca HOM05D000054 ORTHO05D000286 1.6e-07 58.9 64 46.9
Sed0002651 Sechium edule HOM05D000054 ORTHO05D000286 1.6e-07 58.9 64 50.0
TAR629G2622 Trochodendron aralioides HOM05D000054 ORTHO05D000286 1.6e-07 58.9 63 44.4
MSTRG.15915 Avicennia marina HOM05D000054 ORTHO05D000286 2.1e-07 58.5 62 45.2
MELO3C002587.2 Cucumis melo HOM05D000054 ORTHO05D000286 2.1e-07 58.5 64 51.6
HanXRQChr04g0124151 Helianthus annuus HOM05D000054 ORTHO05D000286 2.1e-07 58.5 62 50.0
Manes.16G025500 Manihot esculenta HOM05D000054 ORTHO05D000286 2.1e-07 58.5 62 50.0
ATR0618G399 Amborella trichopoda HOM05D000054 ORTHO05D000286 2.7e-07 58.2 62 48.4
MBI14_g28265_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D000286 2.7e-07 58.2 63 49.2
FAN11G3352 Fragaria x ananassa HOM05D000054 ORTHO05D000286 3.5e-07 57.8 64 45.3
Lalb_Chr02g0156201 Lupinus albus HOM05D000054 ORTHO05D000286 3.5e-07 57.8 62 43.5
TAR627G0152 Trochodendron aralioides HOM05D000054 ORTHO05D000286 4.6e-07 57.4 63 44.4
FAN16G2665 Fragaria x ananassa HOM05D000054 ORTHO05D000286 6.0e-07 57.0 64 45.3
FAN25G1834 Fragaria x ananassa HOM05D000054 ORTHO05D000286 6.0e-07 57.0 64 45.3
Nn1g06610 Nelumbo nucifera HOM05D000054 ORTHO05D000286 6.0e-07 57.0 64 45.3
RhsimUnG0044600 Rhododendron simsii HOM05D000054 ORTHO05D000286 6.0e-07 57.0 33 72.7
Peaxi162Scf00069g02131 Petunia axillaris HOM05D000054 ORTHO05D000286 7.8e-07 56.6 40 65.0
SEGI_05267 Sequoiadendron giganteum HOM05D000054 ORTHO05D000286 7.8e-07 56.6 61 44.3
QL05p039500 Quercus lobata HOM05D000054 ORTHO05D000286 1.0e-06 56.2 64 46.9
Sc03g0007890 Simmondsia chinensis HOM05D000054 ORTHO05D000286 1.0e-06 56.2 60 48.3
SGA_v2.0_scaffold85G26746 Striga asiatica HOM05D000054 ORTHO05D003668 1.0e-06 56.2 39 61.5
HPP92_015498 Vanilla planifolia HOM05D000054 ORTHO05D000286 1.0e-06 56.2 62 43.5
Hma1.2p1_0126F.1_g059190 Hydrangea macrophylla HOM05D000054 ORTHO05D000286 1.3e-06 55.8 63 46.0
CSS0016331 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D000286 1.7e-06 55.5 50 50.0
CsaV3_1G012130 Cucumis sativus L. HOM05D000054 ORTHO05D000286 1.7e-06 55.5 64 48.4
Duzib235G0990 Durio zibethinus HOM05D000054 ORTHO05D000286 1.7e-06 55.5 63 49.2
QL07p044609 Quercus lobata HOM05D000054 ORTHO05D000286 1.7e-06 55.5 62 45.2
Rhsim02G0127100 Rhododendron simsii HOM05D000054 ORTHO05D000286 1.7e-06 55.5 63 44.4
VMungo0251G0690 Vigna mungo HOM05D000054 ORTHO05D000286 1.7e-06 55.5 63 46.0
Hund23702 Selenicereus undatus HOM05D000054 ORTHO05D000286 2.3e-06 55.1 62 43.5
arahy.Tifrunner.gnm1.ann1.3X83TA Arachis hypogaea HOM05D000054 ORTHO05D000286 3.0e-06 54.7 62 45.2
arahy.Tifrunner.gnm1.ann1.8MLT52 Arachis hypogaea HOM05D000054 ORTHO05D000286 3.0e-06 54.7 62 45.2
HanXRQChr15g0482491 Helianthus annuus HOM05D000054 ORTHO05D000286 3.0e-06 54.7 62 45.2
FAN21G2860 Fragaria x ananassa HOM05D000054 ORTHO05D000286 3.9e-06 54.3 64 43.8
Potri.001G438400 Populus trichocarpa HOM05D000054 ORTHO05D000286 3.9e-06 54.3 61 41.0
arahy.Tifrunner.gnm1.ann1.A5W2CW Arachis hypogaea HOM05D000054 ORTHO05D000286 5.1e-06 53.9 58 44.8
MSTRG.16120 Avicennia marina HOM05D000054 ORTHO05D000286 5.1e-06 53.9 62 45.2
CSS0003678 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D000286 5.1e-06 53.9 34 64.7
Cfa017542 Carpinus fangiana HOM05D000054 ORTHO05D000286 5.1e-06 53.9 39 61.5
ClCG03G005900 Citrullus lanatus HOM05D000054 ORTHO05D000286 5.1e-06 53.9 64 46.9
Haze_20605 Corylus avellana HOM05D000054 ORTHO05D000286 5.1e-06 53.9 59 47.5
ECA236G2835 Erigeron canadensis HOM05D000054 ORTHO05D000286 5.1e-06 53.9 62 46.8
Thecc.06G190900 Theobroma cacao HOM05D000054 ORTHO05D000286 5.1e-06 53.9 63 47.6
arahy.Tifrunner.gnm1.ann1.CMI41D Arachis hypogaea HOM05D000054 ORTHO05D000286 6.6e-06 53.5 58 46.6
MSTRG.5582 Avicennia marina HOM05D000054 ORTHO05D000286 6.6e-06 53.5 59 52.5
COL.COLO4_31504 Corchorus olitorius HOM05D000054 ORTHO05D000286 6.6e-06 53.5 64 46.9
FAN10G0834 Fragaria x ananassa HOM05D000054 ORTHO05D000286 6.6e-06 53.5 65 44.6
FAN10G2730 Fragaria x ananassa HOM05D000054 ORTHO05D000286 6.6e-06 53.5 65 44.6
PSO541G4022 Papaver somniferum HOM05D000054 ORTHO05D000286 6.6e-06 53.5 63 46.0
Sed0019778 Sechium edule HOM05D000054 ORTHO05D000286 6.6e-06 53.5 50 50.0
GSVIVG01006444001 Vitis vinifera HOM05D000054 ORTHO05D000286 6.6e-06 53.5 64 43.8
DCAR_004088 Daucus carota HOM05D000054 ORTHO05D000286 8.6e-06 53.1 45 53.3
FAN01G2223 Fragaria x ananassa HOM05D000054 ORTHO05D000286 8.6e-06 53.1 33 66.7
FAN10G2613 Fragaria x ananassa HOM05D000046 ORTHO05D000667 8.6e-06 53.1 55 47.3
Gohir.D01G024300 Gossypium hirsutum HOM05D000054 ORTHO05D000286 8.6e-06 53.1 61 45.9
Gorai.002G032800 Gossypium raimondii HOM05D000054 ORTHO05D000286 8.6e-06 53.1 61 45.9


User provided reference genes

Program Settings