Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04135 Brassica carinata HOM05D005411 ORTHO05D006463 2.7e-28 127.9 60 100.0
BcaC03g18356 Brassica carinata HOM05D005411 ORTHO05D006463 1.1e-18 95.9 56 83.9
C02p64340 Brassica napus HOM05D005411 ORTHO05D006463 1.1e-18 95.9 56 83.9
Aa31LG9G10800 Aethionema arabicum HOM05D005411 ORTHO05D006463 3.3e-18 94.4 58 77.6
BraA03t14482Z Brassica rapa HOM05D000022 ORTHO05D000071 3.3e-18 94.4 56 82.1
A03p54210 Brassica napus HOM05D005411 ORTHO05D006463 5.6e-18 93.6 56 82.1
BolC5t34770H Brassica oleracea HOM05D005411 ORTHO05D006463 5.6e-18 93.6 54 85.2
BcaNung01456 Brassica carinata HOM05D005411 ORTHO05D006463 2.8e-17 91.3 56 78.6
C07p52580 Brassica napus HOM05D000022 ORTHO05D000071 2.8e-17 91.3 56 78.6
BolC7t45755H Brassica oleracea HOM05D005411 ORTHO05D006463 2.8e-17 91.3 56 78.6
AL7G30140 Arabidopsis lyrata HOM05D005411 ORTHO05D006463 3.6e-17 90.9 56 78.6
BcaNung03266 Brassica carinata HOM05D005411 ORTHO05D006463 6.2e-17 90.1 56 78.6
Carub.0007s1784 Capsella rubella HOM05D005411 ORTHO05D006463 8.1e-17 89.7 56 76.8
CARHR230670 Cardamine hirsuta HOM05D005411 ORTHO05D006463 8.1e-17 89.7 56 76.8
TWI60G1258 Tripterygium wilfordii HOM05D005411 ORTHO05D006463 1.1e-16 89.4 56 76.8
Thecc.03G279100 Theobroma cacao HOM05D005411 ORTHO05D006463 1.8e-16 88.6 58 70.7
Thhalv10026496m.g Eutrema salsugineum HOM05D005411 ORTHO05D006463 2.3e-16 88.2 56 75.0
AT4G23330 Arabidopsis thaliana HOM05D005411 ORTHO05D006463 4.0e-16 87.4 56 75.0
BcaC09g51012 Brassica carinata HOM05D005411 ORTHO05D006463 4.0e-16 87.4 56 76.8
A01p14570 Brassica napus HOM05D005411 ORTHO05D006463 4.0e-16 87.4 56 76.8
BolC1t01733H Brassica oleracea HOM05D005411 ORTHO05D006463 4.0e-16 87.4 56 76.8
BraA01t01399Z Brassica rapa HOM05D005411 ORTHO05D006463 4.0e-16 87.4 56 76.8
Cfa012226 Carpinus fangiana HOM05D005411 ORTHO05D006463 5.2e-16 87.0 58 72.4
FAN04G3034 Fragaria x ananassa HOM05D005411 ORTHO05D006463 5.2e-16 87.0 59 71.2
SGA_v2.0_scaffold173G39183 Striga asiatica HOM05D005411 ORTHO05D006463 5.2e-16 87.0 58 70.7
FAN13G2772 Fragaria x ananassa HOM05D005411 ORTHO05D006463 1.2e-15 85.9 59 69.5
THA.LOC104814574 Tarenaya hassleriana HOM05D005411 ORTHO05D006463 1.5e-15 85.5 56 73.2
FAN18G0348 Fragaria x ananassa HOM05D005411 ORTHO05D006463 2.6e-15 84.7 59 67.8
TAR374G0701 Trochodendron aralioides HOM05D005411 ORTHO05D006463 2.6e-15 84.7 58 67.2
Aqoxy7G00317 Aquilegia oxysepala HOM05D005411 ORTHO05D006463 5.8e-15 83.6 58 65.5
FAN08G0497 Fragaria x ananassa HOM05D005411 ORTHO05D006463 5.8e-15 83.6 59 67.8
Cc08_g14780 Coffea canephora HOM05D005411 ORTHO05D006463 7.5e-15 83.2 56 69.6
Duzib084G0828 Durio zibethinus HOM05D005411 ORTHO05D006463 7.5e-15 83.2 59 62.7
Duzib205G1808 Durio zibethinus HOM05D005411 ORTHO05D006463 7.5e-15 83.2 57 66.7
RcHm_v2.0_Chr7g0197541 Rosa chinensis HOM05D005411 ORTHO05D006463 9.8e-15 82.8 56 71.4
vmacro13959 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 9.8e-15 82.8 58 69.0
Nitab4.5_0013184g0010 Nicotiana tabacum HOM05D005411 ORTHO05D006463 1.3e-14 82.4 56 67.9
Peaxi162Scf00119g00941 Petunia axillaris HOM05D005411 ORTHO05D006463 1.3e-14 82.4 56 67.9
Migut.A00759 Erythranthe guttata HOM05D005411 ORTHO05D006463 1.7e-14 82.0 56 71.4
MD06G1084200 Malus domestica HOM05D005411 ORTHO05D006463 1.7e-14 82.0 56 69.6
Nitab4.5_0001615g0100 Nicotiana tabacum HOM05D005411 ORTHO05D006463 1.7e-14 82.0 56 66.1
QL12p032900 Quercus lobata HOM05D005411 ORTHO05D006463 1.7e-14 82.0 56 71.4
Solyc08g081130.4 Solanum lycopersicum HOM05D005411 ORTHO05D006463 1.7e-14 82.0 56 67.9
Sopen08g029430 Solanum pennellii HOM05D005411 ORTHO05D006463 1.7e-14 82.0 56 67.9
PGSC0003DMG403012339 Solanum tuberosum HOM05D005411 ORTHO05D006463 1.7e-14 82.0 56 67.9
vmacro11335 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 1.7e-14 82.0 58 65.5
vmacro22820 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 1.7e-14 82.0 58 65.5
Gorai.003G158500 Gossypium raimondii HOM05D005411 ORTHO05D006463 2.2e-14 81.6 56 67.9
Potri.001G103800 Populus trichocarpa HOM05D005411 ORTHO05D006463 2.2e-14 81.6 56 67.9
CSS0034062 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 2.9e-14 81.3 56 69.6
CAN.G774.50 Capsicum annuum HOM05D005411 ORTHO05D006463 2.9e-14 81.3 56 66.1
Ciclev10022634m.g Citrus clementina HOM05D005411 ORTHO05D006463 2.9e-14 81.3 56 69.6
MELO3C016353.2 Cucumis melo HOM05D005411 ORTHO05D006463 2.9e-14 81.3 58 65.5
Manes.02G019300 Manihot esculenta HOM05D005411 ORTHO05D006463 2.9e-14 81.3 56 67.9
Rhsim07G0090400 Rhododendron simsii HOM05D005411 ORTHO05D006463 2.9e-14 81.3 58 67.2
GSVIVG01019751001 Vitis vinifera HOM05D005411 ORTHO05D006463 3.7e-14 80.9 56 69.6
arahy.Tifrunner.gnm1.ann1.FJ1DNZ Arachis hypogaea HOM05D005411 ORTHO05D006463 4.9e-14 80.5 57 63.2
arahy.Tifrunner.gnm1.ann1.P2DUDW Arachis hypogaea HOM05D005411 ORTHO05D006463 4.9e-14 80.5 57 63.2
Oeu011043.2 Olea europaea HOM05D005411 ORTHO05D006463 4.9e-14 80.5 56 67.9
Actinidia02004 Actinidia chinensis HOM05D005411 ORTHO05D006463 6.4e-14 80.1 56 67.9
AagrBONN_evm.TU.Sc2ySwM_369.479 Anthoceros agrestis HOM05D005411 ORTHO05D006463 6.4e-14 80.1 56 64.3
Dinv38939 Davidia involucrata HOM05D005411 ORTHO05D006463 6.4e-14 80.1 56 67.9
Dinv38942 Davidia involucrata HOM05D005411 ORTHO05D006463 6.4e-14 80.1 56 67.9
Gohir.A03G016600 Gossypium hirsutum HOM05D005411 ORTHO05D006463 6.4e-14 80.1 56 66.1
CiPaw.11G134900 Carya illinoinensis HOM05D005411 ORTHO05D006463 8.3e-14 79.7 56 67.9
FvH4_5g02510 Fragaria vesca HOM05D005411 ORTHO05D006463 8.3e-14 79.7 56 67.9
MSTRG.25610 Avicennia marina HOM05D005411 ORTHO05D006463 1.1e-13 79.3 56 69.6
PSO478G4730 Papaver somniferum HOM05D005411 ORTHO05D006463 1.1e-13 79.3 56 66.1
PSO782G3895 Papaver somniferum HOM05D005411 ORTHO05D006463 1.4e-13 79.0 56 66.1
MBI18_g42863_MAGBIO Magnolia biondii HOM05D005411 ORTHO05D006463 2.4e-13 78.2 56 62.5
Nn1g01526 Nelumbo nucifera HOM05D005411 ORTHO05D006463 2.4e-13 78.2 56 62.5
ECA233G5385 Erigeron canadensis HOM05D005411 ORTHO05D006463 5.4e-13 77.0 56 64.3
Hma1.2p1_0377F.1_g139300 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 5.4e-13 77.0 56 66.1
SalBow4G3209 Salvia bowleyana HOM05D005411 ORTHO05D006463 5.4e-13 77.0 56 66.1
Actinidia14564 Actinidia chinensis HOM05D005411 ORTHO05D006463 7.1e-13 76.6 56 66.1
Eucgr.H02261 Eucalyptus grandis HOM05D005411 ORTHO05D006463 9.2e-13 76.3 56 64.3
ClCG07G008090 Citrullus lanatus HOM05D005411 ORTHO05D006463 1.2e-12 75.9 56 64.3
VMungo0251G3187 Vigna mungo HOM05D005411 ORTHO05D006463 1.2e-12 75.9 58 63.8
CANSAT78G0141 Cannabis sativa HOM05D005411 ORTHO05D006463 1.6e-12 75.5 54 68.5
AUR62022799 Chenopodium quinoa HOM05D005411 ORTHO05D006463 1.6e-12 75.5 58 55.2
CsaV3_4G005950 Cucumis sativus L. HOM05D005411 ORTHO05D006463 1.6e-12 75.5 56 64.3
HanXRQChr13g0394241 Helianthus annuus HOM05D005411 ORTHO05D006463 1.6e-12 75.5 56 62.5
Lsat_1_v5_gn_6_6580 Lactuca sativa HOM05D005411 ORTHO05D006463 1.6e-12 75.5 56 62.5
Eucgr.L02732 Eucalyptus grandis HOM05D005411 ORTHO05D006463 2.7e-12 74.7 56 62.5
Lj8E221T1 Lonicera japonica HOM05D005411 ORTHO05D006463 2.7e-12 74.7 56 58.9
Lalb_Chr09g0332851 Lupinus albus HOM05D005411 ORTHO05D006463 3.5e-12 74.3 55 61.8
Sabra01G0078400 Salix brachista HOM05D005411 ORTHO05D006463 3.5e-12 74.3 56 62.5
unitig_46.g18551 Utricularia gibba HOM05D005411 ORTHO05D006463 3.5e-12 74.3 56 62.5
Prupe.5G100600 Prunus persica HOM05D005411 ORTHO05D006463 4.6e-12 73.9 56 64.3
BcaNung00977 Brassica carinata HOM05D005411 ORTHO05D006463 6.0e-12 73.6 47 74.5
PGR042G1580 Punica granatum HOM05D005411 ORTHO05D006463 6.0e-12 73.6 56 60.7
Sed0017646 Sechium edule HOM05D005411 ORTHO05D006463 6.0e-12 73.6 56 62.5
MD14G1105400 Malus domestica HOM05D005411 ORTHO05D006463 7.8e-12 73.2 56 62.5
Psat7g033000 Pisum sativum HOM05D005411 ORTHO05D006463 1.0e-11 72.8 56 60.7
CDE11G0686 Ceratophyllum demersum HOM05D003133 ORTHO05D006463 1.3e-11 72.4 55 60.0
Glyma.05G208200 Glycine max HOM05D005411 ORTHO05D006463 1.3e-11 72.4 56 62.5
Phvul.002G289800 Phaseolus vulgaris HOM05D005411 ORTHO05D006463 1.3e-11 72.4 56 62.5
Hund16039 Selenicereus undatus HOM05D005411 ORTHO05D006463 1.7e-11 72.0 56 55.4
ATR0680G335 Amborella trichopoda HOM05D005411 ORTHO05D006463 3.9e-11 70.9 56 57.1
Medtr8g098255 Medicago truncatula HOM05D005411 ORTHO05D006463 3.9e-11 70.9 56 58.9
TPR.G12871 Trifolium pratense HOM05D005411 ORTHO05D006463 3.9e-11 70.9 56 58.9
SEGI_09083 Sequoiadendron giganteum HOM05D005411 ORTHO05D006463 6.6e-11 70.1 56 58.9
CiPaw.12G092800 Carya illinoinensis HOM05D005411 ORTHO05D006463 8.6e-11 69.7 54 64.8
BcaNung00981 Brassica carinata HOM05D005411 ORTHO05D006463 1.1e-10 69.3 67 56.7
Pp3c11_2200 Physcomitrium patens HOM05D005411 ORTHO05D006463 1.9e-10 68.6 56 58.9
Zm00001eb104990 Zea mays HOM05D005411 ORTHO05D006463 1.9e-10 68.6 55 54.5
Ca_17530_v3 Cicer arietinum L. HOM05D005411 ORTHO05D006463 5.6e-10 67.0 55 58.2
Os07g0483400 Oryza sativa ssp. japonica HOM05D005411 ORTHO05D006463 5.6e-10 67.0 54 55.6
C01p18020 Brassica napus HOM05D005411 ORTHO05D006463 6.2e-09 63.5 41 75.6
AUR62012163 Chenopodium quinoa HOM05D005411 ORTHO05D006463 6.2e-09 63.5 96 35.4
Lj4g0004308 Lotus japonicus HOM05D005411 ORTHO05D006463 1.1e-08 62.8 56 55.4
HPP92_001497 Vanilla planifolia HOM05D005411 ORTHO05D006463 5.8e-07 57.0 49 53.1
Gohir.D03G151300 Gossypium hirsutum HOM05D005411 ORTHO05D006463 7.6e-07 56.6 41 63.4
BolC3t16740H Brassica oleracea HOM05D005411 ORTHO05D006463 2.2e-06 55.1 49 59.2
Mapoly0008s0209 Marchantia polymorpha HOM05D005411 ORTHO05D006463 2.9e-06 54.7 56 46.4
CDE09G0994 Ceratophyllum demersum HOM05D005411 ORTHO05D006463 6.4e-06 53.5 41 61.0


User provided reference genes

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