Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04119 Brassica carinata HOM05D002285 ORTHO05D004192 1.0e-41 172.9 84 100.0
BcaC01g04120 Brassica carinata HOM05D002285 ORTHO05D004192 1.8e-35 152.1 74 100.0
BolC3t16752H Brassica oleracea HOM05D002285 ORTHO05D004192 1.8e-35 152.1 74 100.0
C03p44920 Brassica napus HOM05D002285 ORTHO05D004192 3.5e-34 147.9 74 97.3
A03p37070 Brassica napus HOM05D002285 ORTHO05D004192 2.3e-30 135.2 74 89.2
BraA03t12869Z Brassica rapa HOM05D002285 ORTHO05D004192 2.3e-30 135.2 74 89.2
Thhalv10020260m.g Eutrema salsugineum HOM05D002285 ORTHO05D004192 3.7e-28 127.9 73 86.3
Sp3g09680 Schrenkiella parvula HOM05D002285 ORTHO05D004192 1.4e-27 125.9 73 83.6
Carub.0003s1077 Capsella rubella HOM05D002285 ORTHO05D004192 3.2e-27 124.8 73 83.6
CARHR086000 Cardamine hirsuta HOM05D002285 ORTHO05D004192 7.0e-27 123.6 73 82.2
AT3G11450 Arabidopsis thaliana HOM05D002285 ORTHO05D004192 3.5e-26 121.3 73 79.5
BcaB06g25623 Brassica carinata HOM05D002285 ORTHO05D004192 1.3e-25 119.4 73 82.2
BraA05t22583Z Brassica rapa HOM05D002285 ORTHO05D004192 1.7e-25 119.0 74 78.4
BcaC05g29373 Brassica carinata HOM05D002285 ORTHO05D004192 2.3e-25 118.6 74 78.4
C05p56680 Brassica napus HOM05D002285 ORTHO05D004192 2.3e-25 118.6 74 78.4
BolC5t34333H Brassica oleracea HOM05D002285 ORTHO05D004192 2.3e-25 118.6 74 78.4
AL3G22990 Arabidopsis lyrata HOM05D002285 ORTHO05D004192 3.0e-25 118.2 73 80.8
BcaB04g21135 Brassica carinata HOM05D002285 ORTHO05D004192 2.5e-24 115.2 75 77.3
A05p37890 Brassica napus HOM05D002285 ORTHO05D004192 4.3e-24 114.4 75 77.3
BcaB04g18640 Brassica carinata HOM05D002285 ORTHO05D004192 4.4e-21 104.4 73 74.0
Aa31LG3G4810 Aethionema arabicum HOM05D002285 ORTHO05D004192 5.4e-19 97.4 67 65.7
Aa31LG3G4780 Aethionema arabicum HOM05D002285 ORTHO05D004192 9.2e-19 96.7 66 66.7
THA.LOC104826826 Tarenaya hassleriana HOM05D002285 ORTHO05D004192 1.3e-17 92.8 67 71.6
THA.LOC104816587 Tarenaya hassleriana HOM05D002285 ORTHO05D004192 3.9e-17 91.3 74 63.5
Sp6g36800 Schrenkiella parvula HOM05D002285 ORTHO05D004192 1.5e-16 89.4 87 54.0
CARHR206810 Cardamine hirsuta HOM05D002285 ORTHO05D004192 9.5e-16 86.7 74 62.2
Thhalv10012905m.g Eutrema salsugineum HOM05D002285 ORTHO05D004192 9.5e-16 86.7 75 61.3
AL6G16060 Arabidopsis lyrata HOM05D002285 ORTHO05D004192 1.2e-15 86.3 71 64.8
AT5G06110 Arabidopsis thaliana HOM05D002285 ORTHO05D004192 1.2e-15 86.3 71 64.8
A03p02550 Brassica napus HOM05D002285 ORTHO05D004192 2.1e-15 85.5 79 60.8
BraA03t09616Z Brassica rapa HOM05D002285 ORTHO05D004192 2.1e-15 85.5 79 60.8
BcaB01g05745 Brassica carinata HOM05D002285 ORTHO05D004192 3.6e-15 84.7 72 59.7
CiPaw.06G144200 Carya illinoinensis HOM05D002285 ORTHO05D004192 6.2e-15 84.0 63 63.5
BcaB01g05973 Brassica carinata HOM05D002285 ORTHO05D004192 8.1e-15 83.6 79 60.8
A03p02530 Brassica napus HOM05D002285 ORTHO05D004192 8.1e-15 83.6 79 59.5
BolC3t12844H Brassica oleracea HOM05D002285 ORTHO05D004192 8.1e-15 83.6 79 60.8
C03p02870 Brassica napus HOM05D002285 ORTHO05D004192 1.1e-14 83.2 79 59.5
BcaB01g05971 Brassica carinata HOM05D002285 ORTHO05D004192 1.4e-14 82.8 79 59.5
BolC3t12842H Brassica oleracea HOM05D002285 ORTHO05D004192 1.4e-14 82.8 79 59.5
C03p02880 Brassica napus HOM05D002285 ORTHO05D004192 2.4e-14 82.0 79 59.5
BraA03t09614Z Brassica rapa HOM05D002285 ORTHO05D004192 3.1e-14 81.6 78 60.3
Carub.0006s0498 Capsella rubella HOM05D002285 ORTHO05D004192 3.1e-14 81.6 86 52.3
Gohir.A06G172300 Gossypium hirsutum HOM05D002285 ORTHO05D004192 8.9e-14 80.1 66 59.1
Gohir.D06G181100 Gossypium hirsutum HOM05D002285 ORTHO05D004192 8.9e-14 80.1 66 59.1
COL.COLO4_32862 Corchorus olitorius HOM05D002285 ORTHO05D004192 1.2e-13 79.7 66 60.6
Gorai.010G212800 Gossypium raimondii HOM05D002285 ORTHO05D004192 1.2e-13 79.7 66 59.1
Cpa.g.sc33.153 Carica papaya HOM05D002285 ORTHO05D004192 1.5e-13 79.3 68 55.9
Gohir.D06G181300 Gossypium hirsutum HOM05D002285 ORTHO05D004192 2.0e-13 79.0 66 57.6
MD10G1150700 Malus domestica HOM05D002285 ORTHO05D004192 2.6e-13 78.6 52 69.2
Oeu004240.2 Olea europaea HOM05D002285 ORTHO05D004192 2.6e-13 78.6 69 55.1
Thecc.10G132200 Theobroma cacao HOM05D002285 ORTHO05D004192 2.6e-13 78.6 51 70.6
Gorai.010G212600 Gossypium raimondii HOM05D002285 ORTHO05D004192 3.4e-13 78.2 67 55.2
MD05G1158000 Malus domestica HOM05D002285 ORTHO05D004192 3.4e-13 78.2 62 62.9
Gohir.A06G172500 Gossypium hirsutum HOM05D002285 ORTHO05D004192 1.3e-12 76.3 66 56.1
Manes.15G172900 Manihot esculenta HOM05D002285 ORTHO05D004192 1.3e-12 76.3 76 47.4
Duzib114G1054 Durio zibethinus HOM05D002285 ORTHO05D004192 2.2e-12 75.5 66 56.1
Duzib128G0133 Durio zibethinus HOM05D002285 ORTHO05D004192 2.2e-12 75.5 66 56.1
Lalb_Chr20g0123651 Lupinus albus HOM05D002285 ORTHO05D004192 2.2e-12 75.5 62 62.9
Actinidia01697 Actinidia chinensis HOM05D002285 ORTHO05D004192 2.9e-12 75.1 64 57.8
arahy.Tifrunner.gnm1.ann1.IXY6UZ Arachis hypogaea HOM05D002285 ORTHO05D004192 2.9e-12 75.1 66 59.1
Haze_01812 Corylus avellana HOM05D002285 ORTHO05D004192 2.9e-12 75.1 63 57.1
DCAR_029722 Daucus carota HOM05D002285 ORTHO05D004192 2.9e-12 75.1 66 57.6
ClCG05G009460 Citrullus lanatus HOM05D002285 ORTHO05D004192 3.8e-12 74.7 64 54.7
Dinv04986 Davidia involucrata HOM05D002285 ORTHO05D004192 3.8e-12 74.7 79 44.3
Lj9P652T21 Lonicera japonica HOM05D002285 ORTHO05D004192 3.8e-12 74.7 79 46.8
Oeu050118.1 Olea europaea HOM05D002285 ORTHO05D004192 3.8e-12 74.7 65 55.4
Sed0020539 Sechium edule HOM05D002285 ORTHO05D004192 3.8e-12 74.7 64 54.7
arahy.Tifrunner.gnm1.ann1.2HCW1A Arachis hypogaea HOM05D002285 ORTHO05D004192 4.9e-12 74.3 66 59.1
CiPaw.05G050700 Carya illinoinensis HOM05D002285 ORTHO05D004192 6.4e-12 73.9 64 53.1
MELO3C019433.2 Cucumis melo HOM05D002285 ORTHO05D004192 6.4e-12 73.9 64 53.1
Prupe.8G189400 Prunus persica HOM05D002285 ORTHO05D004192 6.4e-12 73.9 52 65.4
vmacro09396 Vaccinium macrocarpon HOM05D002285 ORTHO05D004192 6.4e-12 73.9 67 53.7
FAN15G0402 Fragaria x ananassa HOM05D002285 ORTHO05D004192 8.4e-12 73.6 67 55.2
Potri.001G035800 Populus trichocarpa HOM05D002285 ORTHO05D004192 8.4e-12 73.6 76 44.7
GSVIVG01012187001 Vitis vinifera HOM05D002285 ORTHO05D004192 8.4e-12 73.6 69 49.3
FvH4_2g17680 Fragaria vesca HOM05D002285 ORTHO05D004192 1.1e-11 73.2 67 55.2
FAN24G1949 Fragaria x ananassa HOM05D002285 ORTHO05D004192 1.1e-11 73.2 67 55.2
Ciclev10011261m.g Citrus clementina HOM05D002285 ORTHO05D004192 1.4e-11 72.8 66 54.5
Psat7g025360 Pisum sativum HOM05D002285 ORTHO05D004192 1.4e-11 72.8 63 57.1
Potri.003G190000 Populus trichocarpa HOM05D002285 ORTHO05D004192 1.4e-11 72.8 76 44.7
Eucgr.G03185 Eucalyptus grandis HOM05D002285 ORTHO05D004192 1.9e-11 72.4 63 57.1
PSO541G2672 Papaver somniferum HOM05D002285 ORTHO05D004192 1.9e-11 72.4 66 51.5
VMungo0540G1611 Vigna mungo HOM05D002285 ORTHO05D004192 1.9e-11 72.4 63 58.7
PSO675G1354 Papaver somniferum HOM05D002285 ORTHO05D004192 2.4e-11 72.0 66 50.0
TAR629G0600 Trochodendron aralioides HOM05D002285 ORTHO05D004192 2.4e-11 72.0 63 55.6
Glyma.08G188900 Glycine max HOM05D002285 ORTHO05D004192 3.2e-11 71.6 63 57.1
Medtr3g113680 Medicago truncatula HOM05D002285 ORTHO05D004192 3.2e-11 71.6 63 55.6
Rhsim04G0038900 Rhododendron simsii HOM05D002285 ORTHO05D004192 3.2e-11 71.6 75 48.0
TAR629G0471 Trochodendron aralioides HOM05D002285 ORTHO05D004192 3.2e-11 71.6 64 53.1
Glyma.12G168800 Glycine max HOM05D002285 ORTHO05D004192 4.1e-11 71.2 62 58.1
Phvul.006G217200 Phaseolus vulgaris HOM05D002285 ORTHO05D004192 4.1e-11 71.2 63 57.1
TWI12G1303 Tripterygium wilfordii HOM05D002285 ORTHO05D004192 4.1e-11 71.2 52 59.6
CAN.G134.32 Capsicum annuum HOM05D002285 ORTHO05D004192 5.4e-11 70.9 79 46.8
Migut.I00387 Erythranthe guttata HOM05D002285 ORTHO05D004192 5.4e-11 70.9 59 59.3
Hma1.2p1_0233F.1_g098050 Hydrangea macrophylla HOM05D002285 ORTHO05D004192 5.4e-11 70.9 67 47.8
Sabra03G0139800 Salix brachista HOM05D002285 ORTHO05D004192 5.4e-11 70.9 62 59.7
CsaV3_3G019250 Cucumis sativus L. HOM05D002285 ORTHO05D004192 7.1e-11 70.5 64 51.6
RcHm_v2.0_Chr6g0282661 Rosa chinensis HOM05D002285 ORTHO05D004192 7.1e-11 70.5 77 42.9
TWI75G0169 Tripterygium wilfordii HOM05D002285 ORTHO05D004192 7.1e-11 70.5 49 63.3
Ca_15481_v3 Cicer arietinum L. HOM05D002285 ORTHO05D004192 1.2e-10 69.7 63 57.1
Cc07_g11350 Coffea canephora HOM05D002285 ORTHO05D004192 1.2e-10 69.7 51 62.7
PGR031G2891 Punica granatum HOM05D002285 ORTHO05D004192 1.2e-10 69.7 63 54.0
MSTRG.11320 Avicennia marina HOM05D002285 ORTHO05D004192 1.6e-10 69.3 73 47.9
Lalb_Chr15g0090711 Lupinus albus HOM05D002285 ORTHO05D004192 1.6e-10 69.3 63 55.6
Sabra01G0024900 Salix brachista HOM05D002285 ORTHO05D004192 1.6e-10 69.3 76 44.7
CSS0011301 Camellia sinensis var. sinensis HOM05D002285 ORTHO05D004192 2.1e-10 68.9 66 50.0
Lj6g0002670 Lotus japonicus HOM05D002285 ORTHO05D004192 2.1e-10 68.9 63 58.7
BcaB01g05739 Brassica carinata HOM05D002285 ORTHO05D004192 2.7e-10 68.6 89 47.2
Zm00001eb085870 Zea mays HOM05D002285 ORTHO05D004192 2.7e-10 68.6 69 50.7
Nitab4.5_0004168g0010 Nicotiana tabacum HOM05D002285 ORTHO05D004192 3.5e-10 68.2 60 58.3
Nitab4.5_0007610g0020 Nicotiana tabacum HOM05D002285 ORTHO05D004192 3.5e-10 68.2 54 61.1
QL06p001430 Quercus lobata HOM05D002285 ORTHO05D004192 3.5e-10 68.2 62 58.1
Psat0s1023g0040 Pisum sativum HOM05D002285 ORTHO05D004192 4.6e-10 67.8 68 52.9
SGA_v2.0_scaffold19G08809 Striga asiatica HOM05D002285 ORTHO05D004192 4.6e-10 67.8 58 56.9
CDE08G0904 Ceratophyllum demersum HOM05D002285 ORTHO05D004192 6.0e-10 67.4 66 50.0
Sopen01g040410 Solanum pennellii HOM05D002285 ORTHO05D004192 6.0e-10 67.4 69 46.4
SGA_v2.0_scaffold25G10982 Striga asiatica HOM05D002285 ORTHO05D004192 6.0e-10 67.4 68 52.9
Medtr7g109430 Medicago truncatula HOM05D002285 ORTHO05D004192 7.8e-10 67.0 73 43.8
ECA240G2921 Erigeron canadensis HOM05D002285 ORTHO05D004192 1.0e-09 66.6 79 41.8
Solyc01g096700.4 Solanum lycopersicum HOM05D002285 ORTHO05D004192 1.0e-09 66.6 69 46.4
PGSC0003DMG400003295 Solanum tuberosum HOM05D002285 ORTHO05D004192 1.0e-09 66.6 69 46.4
Peaxi162Scf00220g00025 Petunia axillaris HOM05D002285 ORTHO05D004192 1.7e-09 65.9 67 49.3
Lsat_1_v5_gn_6_76300 Lactuca sativa HOM05D002285 ORTHO05D004192 3.0e-09 65.1 52 57.7
Sed0011384 Sechium edule HOM05D002285 ORTHO05D004192 3.0e-09 65.1 49 63.3
Zm00001eb085940 Zea mays HOM05D002285 ORTHO05D004192 3.0e-09 65.1 69 49.3
EL10Ac1g01198 Beta vulgaris HOM05D002285 ORTHO05D004192 5.1e-09 64.3 76 42.1
EL10Ac1g01199 Beta vulgaris HOM05D002285 ORTHO05D004192 5.1e-09 64.3 76 42.1
PSO675G2493 Papaver somniferum HOM05D002285 ORTHO05D004192 5.1e-09 64.3 64 56.2
SHI11339 Sapria himalayana HOM05D002285 ORTHO05D004192 5.1e-09 64.3 62 51.6
Ah.14g085290 Amaranthus hybridus HOM05D002285 ORTHO05D004192 6.6e-09 63.9 71 43.7
PSO541G2777 Papaver somniferum HOM05D002285 ORTHO05D004192 6.6e-09 63.9 49 65.3
unitig_22.g6247 Utricularia gibba HOM05D002285 ORTHO05D004192 6.6e-09 63.9 73 45.2
HPP92_028185 Vanilla planifolia HOM05D002285 ORTHO05D004192 6.6e-09 63.9 61 55.7
Ah.09g228410 Amaranthus hybridus HOM05D002285 ORTHO05D004192 8.7e-09 63.5 76 42.1
CANSAT01G1933 Cannabis sativa HOM05D002285 ORTHO05D004192 8.7e-09 63.5 66 50.0
CAN.G74.14 Capsicum annuum HOM05D002285 ORTHO05D004192 8.7e-09 63.5 60 50.0
AUR62027776 Chenopodium quinoa HOM05D002285 ORTHO05D004192 1.5e-08 62.8 67 46.3
HanXRQChr03g0083651 Helianthus annuus HOM05D002285 ORTHO05D004192 2.5e-08 62.0 73 42.5
HanXRQChr03g0084781 Helianthus annuus HOM05D002285 ORTHO05D004192 4.3e-08 61.2 73 42.5
AUR62018932 Chenopodium quinoa HOM05D002285 ORTHO05D004192 5.6e-08 60.8 77 40.3
Nn7g37168 Nelumbo nucifera HOM05D002285 ORTHO05D004192 5.6e-08 60.8 73 45.2
Aqoxy2G00069 Aquilegia oxysepala HOM05D002285 ORTHO05D004192 1.2e-07 59.7 46 60.9
ECA246G3634 Erigeron canadensis HOM05D002285 ORTHO05D004192 1.2e-07 59.7 51 52.9
HanXRQChr07g0198621 Helianthus annuus HOM05D002285 ORTHO05D004192 1.6e-07 59.3 54 53.7
SEGI_05673 Sequoiadendron giganteum HOM05D002285 ORTHO05D004192 1.6e-07 59.3 69 46.4
Sc09g0004710 Simmondsia chinensis HOM05D002285 ORTHO05D004192 2.1e-07 58.9 65 46.2
ATR1096G014 Amborella trichopoda HOM05D002285 ORTHO05D004192 3.6e-07 58.2 62 46.8
unitig_8.g3025 Utricularia gibba HOM05D002285 ORTHO05D004192 4.7e-07 57.8 61 49.2
Lsat_1_v5_gn_3_22761 Lactuca sativa HOM05D002285 ORTHO05D004192 6.2e-07 57.4 69 39.1
CDE02G4687 Ceratophyllum demersum HOM05D002285 ORTHO05D004192 8.1e-07 57.0 57 52.6
HanXRQChr02g0034471 Helianthus annuus HOM05D002285 ORTHO05D004192 4.0e-06 54.7 73 39.7
SMO367G0595 Selaginella moellendorffii HOM05D002285 ORTHO05D004192 5.2e-06 54.3 44 61.4
HanXRQChr17g0536391 Helianthus annuus HOM05D002285 ORTHO05D004192 6.9e-06 53.9 49 51.0
Oeu037828.3 Olea europaea HOM05D002285 ORTHO05D004192 6.9e-06 53.9 47 48.9


User provided reference genes

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