Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 0.0e+00 1420.2 743 100.0
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 0.0e+00 1379.4 743 97.8
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 0.0e+00 1343.2 744 95.3
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 0.0e+00 1304.3 774 90.1
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 0.0e+00 1168.7 684 89.5
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 0.0e+00 1167.9 683 91.2
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 0.0e+00 1130.5 685 87.0
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 0.0e+00 1124.0 765 81.6
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 0.0e+00 1123.2 685 86.4
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 0.0e+00 1108.2 673 86.6
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 2.9e-305 1051.6 765 77.0
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 2.9e-305 1051.6 765 77.0
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 1.3e-302 1042.7 690 78.7
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 6.8e-283 977.2 710 77.0
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 7.8e-271 937.2 702 71.7
AL3G23620 Arabidopsis lyrata HOM05D004031 ORTHO05D006678 2.7e-255 885.6 551 87.5
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 6.9e-251 870.9 759 61.7
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 1.6e-247 859.8 826 57.0
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 4.1e-243 845.1 807 58.0
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 1.2e-239 833.6 755 59.9
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 8.7e-238 827.4 740 60.0
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 4.3e-237 825.1 747 59.0
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 1.6e-236 823.2 747 58.8
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 2.4e-235 819.3 893 53.1
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 2.2e-233 812.8 754 58.4
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 8.5e-233 810.8 743 58.7
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 8.5e-233 810.8 827 54.2
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 2.5e-232 809.3 697 61.0
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 3.6e-231 805.4 699 60.7
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 2.6e-229 799.3 740 59.1
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 2.6e-229 799.3 756 56.5
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 3.3e-229 798.9 726 59.6
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 1.1e-227 793.9 757 57.6
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 2.6e-226 789.3 732 57.7
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 7.7e-226 787.7 894 52.2
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 7.7e-226 787.7 746 56.3
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 1.3e-225 786.9 765 56.1
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 2.2e-225 786.2 762 56.3
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 1.1e-224 783.9 750 57.2
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 2.5e-224 782.7 730 57.5
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 5.5e-224 781.6 784 55.0
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 1.6e-223 780.0 722 57.8
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 6.1e-223 778.1 737 56.0
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 7.9e-223 777.7 740 56.5
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 1.0e-222 777.3 737 56.3
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 2.3e-222 776.2 735 56.9
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 3.0e-222 775.8 761 55.8
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 5.2e-222 775.0 754 55.8
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 5.2e-222 775.0 751 55.4
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 7.4e-221 771.2 740 56.2
Thhalv10020623m.g Eutrema salsugineum HOM05D004031 ORTHO05D006678 1.3e-220 770.4 486 86.6
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 1.3e-220 770.4 840 51.3
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 4.8e-220 768.5 731 56.2
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 6.3e-220 768.1 766 55.0
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 8.2e-220 767.7 768 56.4
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 2.4e-219 766.1 720 59.6
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 2.4e-219 766.1 730 56.4
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 4.1e-219 765.4 740 56.8
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 4.1e-219 765.4 737 55.8
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 7.0e-219 764.6 764 54.6
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 7.0e-219 764.6 747 55.3
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.0e-217 760.8 758 55.4
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 1.5e-216 756.9 708 57.5
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 1.5e-216 756.9 738 55.0
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 9.4e-216 754.2 759 56.1
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 2.1e-215 753.1 723 56.6
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 1.4e-214 750.4 722 55.5
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 1.4e-214 750.4 740 54.2
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 6.7e-214 748.0 680 56.8
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 3.3e-213 745.7 734 56.5
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 4.8e-212 741.9 741 54.0
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 4.8e-212 741.9 791 52.3
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 2.4e-211 739.6 733 54.7
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 2.7e-210 736.1 752 53.6
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 1.7e-209 733.4 668 58.2
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 5.0e-209 731.9 755 53.4
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 8.5e-209 731.1 767 53.8
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 3.6e-207 725.7 691 55.3
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 1.0e-206 724.2 753 52.7
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 1.4e-206 723.8 812 50.6
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 8.8e-206 721.1 812 52.5
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 1.3e-204 717.2 777 53.0
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 2.2e-204 716.5 834 48.8
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 2.8e-204 716.1 810 48.1
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 3.7e-204 715.7 703 54.3
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 1.2e-202 710.7 775 52.9
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 4.0e-198 695.7 763 51.6
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 2.0e-197 693.3 764 51.6
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 2.8e-196 689.5 451 77.8
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 9.2e-195 684.5 766 50.4
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 1.7e-193 680.2 784 50.4
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 3.8e-193 679.1 764 49.9
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 3.5e-186 656.0 713 49.1
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 4.0e-182 642.5 734 50.5
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 2.0e-178 630.2 721 49.9
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 4.0e-174 615.9 927 43.3
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 3.2e-171 606.3 714 47.3
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 2.6e-165 586.6 631 53.6
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 3.8e-164 582.8 633 51.2
Solyc03g053010.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 7.8e-162 575.1 621 52.2
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 2.6e-157 560.1 434 65.4
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 1.4e-155 554.3 739 42.1
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 7.1e-155 552.0 668 46.7
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 5.1e-153 545.8 686 43.7
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 2.1e-146 523.9 831 37.9
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 6.9e-142 508.8 397 63.0
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 1.4e-134 484.6 570 46.5
Peaxi162Scf00463g00518 Petunia axillaris HOM05D004031 ORTHO05D006678 1.4e-131 474.6 612 46.2
QL07p024699 Quercus lobata HOM05D004031 ORTHO05D006678 5.1e-121 439.5 503 53.3
Nitab4.5_0000009g0250 Nicotiana tabacum HOM05D004031 ORTHO05D006678 4.4e-112 409.8 494 50.0
SEGI_16646 Sequoiadendron giganteum HOM05D004031 ORTHO05D006678 8.8e-97 359.0 586 39.6
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 1.2e-96 358.6 260 65.8
SHI31751 Sapria himalayana HOM05D004031 ORTHO05D006678 3.0e-89 334.0 483 44.1
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 1.4e-70 271.9 352 43.5
Cpa.g.sc85.42 Carica papaya HOM05D004031 ORTHO05D006678 9.5e-67 259.2 194 66.0
Cpa.g.c40176 Carica papaya HOM05D004031 ORTHO05D006678 1.7e-60 238.4 206 64.1
TAR623G0223 Trochodendron aralioides HOM05D004031 ORTHO05D006678 2.4e-54 218.0 173 64.2
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 7.1e-54 216.5 219 50.7
CSS0049250 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 2.8e-42 177.9 118 69.5
CSS0030127 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 9.9e-40 169.5 143 56.6
Peaxi162Scf00463g00519 Petunia axillaris HOM05D004031 ORTHO05D006678 1.3e-39 169.1 141 56.7
Solyc03g053000.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 2.2e-39 168.3 141 57.4
BcaB06g25555 Brassica carinata HOM05D004031 ORTHO05D006678 2.4e-38 164.9 98 84.7
SHI31745 Sapria himalayana HOM05D004031 ORTHO05D006678 4.6e-37 160.6 143 54.5
PRCOL_00003629 Prasinoderma coloniale HOM05D004031 ORTHO05D006678 2.5e-35 154.8 700 24.3
Aa31LG3G5510 Aethionema arabicum HOM05D004031 ORTHO05D006678 7.3e-35 153.3 91 84.6
C05p55850 Brassica napus HOM05D004031 ORTHO05D006678 2.4e-33 148.3 97 72.2
BolC5t34254H Brassica oleracea HOM05D004031 ORTHO05D006678 4.0e-33 147.5 92 75.0
Psat4g142720 Pisum sativum HOM05D003784 ORTHO05D004345 5.3e-33 147.1 99 67.7
CSS0030002 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 4.6e-29 134.0 114 59.6
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 9.6e-27 126.3 86 65.1
CBR_g32657 Chara braunii HOM05D004031 ORTHO05D006678 1.6e-26 125.6 207 35.7
CBR_g44463 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-25 122.1 158 39.9
A03p37430 Brassica napus HOM05D004031 ORTHO05D011186 1.7e-23 115.5 58 98.3
Cre08.g370250 Chlamydomonas reinhardtii HOM05D004031 ORTHO05D006678 1.7e-23 115.5 539 23.7
Nn3g18463 Nelumbo nucifera HOM05D004031 ORTHO05D006678 1.6e-21 109.0 74 64.9
Carub.0003s1134 Capsella rubella HOM05D004031 ORTHO05D011186 1.1e-19 102.8 59 84.7
Aa31LG3G5450 Aethionema arabicum HOM05D004031 ORTHO05D011186 7.4e-19 100.1 59 79.7
Aa31LG3G5490 Aethionema arabicum HOM05D004031 ORTHO05D011186 7.4e-19 100.1 59 79.7
CBR_g32659 Chara braunii HOM05D001409 ORTHO05D001511 4.8e-18 97.4 158 35.4
MCO13G277 Micromonas commoda HOM05D004031 ORTHO05D006678 1.7e-15 89.0 433 25.2
GSVIVG01033459001 Vitis vinifera HOM05D004031 ORTHO05D011186 4.6e-13 80.9 59 66.1
CDE05G3199 Ceratophyllum demersum HOM05D004031 ORTHO05D011186 6.0e-13 80.5 59 66.1
Potri.016G060550 Populus trichocarpa HOM05D004031 ORTHO05D011186 1.8e-12 79.0 59 62.7
Prupe.7G082600 Prunus persica HOM05D004031 ORTHO05D011186 1.8e-12 79.0 59 64.4
Migut.J01860 Erythranthe guttata HOM05D004031 ORTHO05D011186 2.3e-12 78.6 59 66.1
Eucgr.K01857 Eucalyptus grandis HOM05D004031 ORTHO05D011186 2.3e-12 78.6 58 69.0
Manes.09G038400 Manihot esculenta HOM05D004031 ORTHO05D011186 2.3e-12 78.6 59 64.4
MD12G1054200 Malus domestica HOM05D004031 ORTHO05D011186 3.9e-12 77.8 59 62.7
Thecc.05G176000 Theobroma cacao HOM05D004031 ORTHO05D011186 6.7e-12 77.0 59 62.7
Nn7g35951 Nelumbo nucifera HOM05D004031 ORTHO05D011186 1.9e-11 75.5 55 65.5
MELO3C009606.2 Cucumis melo HOM05D004031 ORTHO05D011186 2.5e-11 75.1 60 60.0
Phvul.001G144800 Phaseolus vulgaris HOM05D004031 ORTHO05D011186 2.5e-11 75.1 59 64.4
Glyma.19G150500 Glycine max HOM05D004031 ORTHO05D011186 3.3e-11 74.7 56 67.9
Sed0024429 Sechium edule HOM05D004031 ORTHO05D011186 3.3e-11 74.7 56 58.9
Nn7g36859 Nelumbo nucifera HOM05D004031 ORTHO05D011186 7.4e-11 73.6 55 65.5
RcHm_v2.0_Chr3g0479131 Rosa chinensis HOM05D004031 ORTHO05D011186 7.4e-11 73.6 59 59.3
CiPaw.09G027900 Carya illinoinensis HOM05D004031 ORTHO05D011186 9.7e-11 73.2 55 65.5
Lalb_Chr15g0079141 Lupinus albus HOM05D004031 ORTHO05D011186 9.7e-11 73.2 59 62.7
Gohir.D01G124600 Gossypium hirsutum HOM05D004031 ORTHO05D011186 1.3e-10 72.8 59 59.3
Lj1g0020490 Lotus japonicus HOM05D004031 ORTHO05D011186 1.3e-10 72.8 55 63.6
CSS0013106 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D011186 1.6e-10 72.4 58 60.3
Duzib128G0401 Durio zibethinus HOM05D004031 ORTHO05D011186 1.6e-10 72.4 59 57.6
Medtr7g093770 Medicago truncatula HOM05D004031 ORTHO05D011186 1.6e-10 72.4 57 63.2
Gohir.A01G137400 Gossypium hirsutum HOM05D004031 ORTHO05D011186 3.7e-10 71.2 59 57.6
Hma1.2p1_0124F.1_g058300 Hydrangea macrophylla HOM05D004031 ORTHO05D011186 4.8e-10 70.9 58 60.3
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 1.4e-09 69.3 58 56.9
Glyma.03G147100 Glycine max HOM05D004031 ORTHO05D011186 9.0e-09 66.6 52 67.3
Cc06_g15560 Coffea canephora HOM05D004031 ORTHO05D011186 3.4e-08 64.7 60 53.3
Nn2g13219 Nelumbo nucifera HOM05D004031 ORTHO05D006678 1.0e-07 63.2 46 56.5
Hund07844 Selenicereus undatus HOM05D004031 ORTHO05D006678 6.5e-07 60.5 57 56.1


User provided reference genes

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