Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04057 Brassica carinata HOM05D005138 ORTHO05D006318 1.1e-37 159.5 79 100.0
BraA03t12909Z Brassica rapa HOM05D005138 ORTHO05D006318 5.4e-37 157.1 77 100.0
BcaC09g48226 Brassica carinata HOM05D005138 ORTHO05D006318 3.9e-35 151.0 74 100.0
C01p53060 Brassica napus HOM05D005138 ORTHO05D006318 3.9e-35 151.0 74 100.0
C03p45540 Brassica napus HOM05D005138 ORTHO05D006318 3.9e-35 151.0 74 100.0
Sp3g10480 Schrenkiella parvula HOM05D005138 ORTHO05D006318 6.6e-35 150.2 74 97.3
BcaB04g18689 Brassica carinata HOM05D005138 ORTHO05D006318 8.6e-35 149.8 74 98.6
BolC1t05249H Brassica oleracea HOM05D005138 ORTHO05D006318 8.6e-35 149.8 74 98.6
BolC3t16831H Brassica oleracea HOM05D005138 ORTHO05D006318 8.6e-35 149.8 74 98.6
AL3G23920 Arabidopsis lyrata HOM05D005138 ORTHO05D006318 1.1e-34 149.4 74 97.3
A03p37550 Brassica napus HOM05D005138 ORTHO05D006318 1.1e-34 149.4 74 98.6
Carub.0003s1162 Capsella rubella HOM05D005138 ORTHO05D006318 1.1e-34 149.4 74 97.3
CARHR086810 Cardamine hirsuta HOM05D005138 ORTHO05D006318 1.1e-34 149.4 74 97.3
A05p37100 Brassica napus HOM05D005138 ORTHO05D006318 3.3e-34 147.9 73 97.3
C05p55530 Brassica napus HOM05D005138 ORTHO05D006318 3.3e-34 147.9 73 97.3
BolC5t34219H Brassica oleracea HOM05D005138 ORTHO05D006318 3.3e-34 147.9 73 97.3
BraA05t22507Z Brassica rapa HOM05D005138 ORTHO05D006318 3.3e-34 147.9 73 97.3
Thhalv10021751m.g Eutrema salsugineum HOM05D005138 ORTHO05D006318 3.3e-34 147.9 74 95.9
AT3G12260 Arabidopsis thaliana HOM05D005138 ORTHO05D006318 4.3e-34 147.5 74 95.9
Aa31LG3G6480 Aethionema arabicum HOM05D005138 ORTHO05D006318 4.0e-32 141.0 74 91.9
THA.LOC104826756 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 3.9e-27 124.4 74 81.1
THA.LOC104799320 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 8.7e-27 123.2 74 81.1
Lj2A602G38 Lonicera japonica HOM05D005138 ORTHO05D006318 6.9e-24 113.6 71 74.6
PGR044G2178 Punica granatum HOM05D005138 ORTHO05D006318 6.9e-24 113.6 70 78.6
Eucgr.G03216 Eucalyptus grandis HOM05D005138 ORTHO05D006318 1.2e-23 112.8 73 75.3
Rhsim09G0131900 Rhododendron simsii HOM05D005138 ORTHO05D006318 1.2e-23 112.8 73 71.2
FvH4_7g03540 Fragaria vesca HOM05D005138 ORTHO05D006318 3.4e-23 111.3 70 75.7
FAN03G2670 Fragaria x ananassa HOM05D005138 ORTHO05D006318 3.4e-23 111.3 70 75.7
FAN06G4838 Fragaria x ananassa HOM05D005138 ORTHO05D006318 3.4e-23 111.3 70 75.7
FAN10G0593 Fragaria x ananassa HOM05D005138 ORTHO05D006318 3.4e-23 111.3 70 75.7
FAN10G2449 Fragaria x ananassa HOM05D005138 ORTHO05D006318 3.4e-23 111.3 70 75.7
Hma1.2p1_0837F.1_g226140 Hydrangea macrophylla HOM05D005138 ORTHO05D006318 7.6e-23 110.2 70 74.3
Gohir.A10G188000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 9.9e-23 109.8 70 74.3
vmacro10390 Vaccinium macrocarpon HOM05D005138 ORTHO05D006318 9.9e-23 109.8 70 72.9
Gorai.004G120800 Gossypium raimondii HOM05D005138 ORTHO05D006318 1.3e-22 109.4 70 72.9
CiPaw.13G015300 Carya illinoinensis HOM05D005138 ORTHO05D006318 1.7e-22 109.0 70 71.4
RcHm_v2.0_Chr1g0325871 Rosa chinensis HOM05D005138 ORTHO05D006318 1.7e-22 109.0 70 72.9
Actinidia34769 Actinidia chinensis HOM05D005138 ORTHO05D006318 2.2e-22 108.6 68 73.5
Duzib128G1035 Durio zibethinus HOM05D005138 ORTHO05D006318 2.9e-22 108.2 70 72.9
Gohir.D10G195900 Gossypium hirsutum HOM05D005138 ORTHO05D006318 2.9e-22 108.2 70 72.9
Gorai.011G218700 Gossypium raimondii HOM05D005138 ORTHO05D006318 2.9e-22 108.2 70 72.9
MD07G1047200 Malus domestica HOM05D005138 ORTHO05D006318 2.9e-22 108.2 70 74.3
Cpa.g.sc169.49 Carica papaya HOM05D005138 ORTHO05D006318 3.8e-22 107.8 70 72.9
TAR362G0697 Trochodendron aralioides HOM05D005138 ORTHO05D006318 3.8e-22 107.8 70 72.9
COL.COLO4_20706 Corchorus olitorius HOM05D005138 ORTHO05D006318 4.9e-22 107.5 69 73.9
Lsat_1_v5_gn_1_116501 Lactuca sativa HOM05D005138 ORTHO05D006318 4.9e-22 107.5 66 75.8
Manes.04G157100 Manihot esculenta HOM05D005138 ORTHO05D006318 4.9e-22 107.5 70 72.9
Sed0002262 Sechium edule HOM05D005138 ORTHO05D006318 6.4e-22 107.1 70 68.6
Haze_03004 Corylus avellana HOM05D005138 ORTHO05D006318 8.4e-22 106.7 70 68.6
CsaV3_5G036890 Cucumis sativus L. HOM05D005138 ORTHO05D006318 8.4e-22 106.7 70 71.4
Dinv44706 Davidia involucrata HOM05D005138 ORTHO05D006318 8.4e-22 106.7 70 70.0
Actinidia38920 Actinidia chinensis HOM05D005138 ORTHO05D006318 1.1e-21 106.3 68 70.6
Gohir.A10G188200 Gossypium hirsutum HOM05D005138 ORTHO05D006318 1.1e-21 106.3 70 71.4
CiPaw.14G008900 Carya illinoinensis HOM05D005138 ORTHO05D006318 1.4e-21 105.9 70 70.0
Manes.11G007200 Manihot esculenta HOM05D005138 ORTHO05D006318 1.9e-21 105.5 70 71.4
CSS0020361 Camellia sinensis var. sinensis HOM05D005138 ORTHO05D006318 2.4e-21 105.1 69 69.6
CANSAT56G0322 Cannabis sativa HOM05D005138 ORTHO05D006318 2.4e-21 105.1 70 71.4
Duzib114G0920 Durio zibethinus HOM05D005138 ORTHO05D006318 2.4e-21 105.1 70 70.0
Cfa010943 Carpinus fangiana HOM05D005138 ORTHO05D006318 3.2e-21 104.8 70 67.1
HanXRQChr11g0341771 Helianthus annuus HOM05D005138 ORTHO05D006318 4.2e-21 104.4 66 72.7
MD02G1279300 Malus domestica HOM05D005138 ORTHO05D006318 4.2e-21 104.4 70 70.0
Zm00001eb001400 Zea mays HOM05D005138 ORTHO05D006318 4.2e-21 104.4 70 68.6
ClCG05G026950 Citrullus lanatus HOM05D005138 ORTHO05D006318 5.4e-21 104.0 69 69.6
Ciclev10002826m.g Citrus clementina HOM05D005138 ORTHO05D006318 5.4e-21 104.0 71 67.6
MELO3C012486.2 Cucumis melo HOM05D005138 ORTHO05D006318 5.4e-21 104.0 69 69.6
TWI74G0500 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 5.4e-21 104.0 70 67.1
SGA_v2.0_scaffold43G16284 Striga asiatica HOM05D005138 ORTHO05D006318 7.1e-21 103.6 69 68.1
Migut.N01855 Erythranthe guttata HOM05D005138 ORTHO05D006318 9.3e-21 103.2 69 69.6
Lalb_Chr19g0132971 Lupinus albus HOM05D005138 ORTHO05D006318 9.3e-21 103.2 72 66.7
RcHm_v2.0_Chr1g0325941 Rosa chinensis HOM05D005138 ORTHO05D006318 9.3e-21 103.2 68 70.6
Lalb_Chr03g0032141 Lupinus albus HOM05D005138 ORTHO05D006318 1.6e-20 102.4 72 66.7
Prupe.2G041500 Prunus persica HOM05D005138 ORTHO05D006318 1.6e-20 102.4 70 68.6
Gohir.D03G123000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 2.1e-20 102.1 69 71.0
Os07g0640100 Oryza sativa ssp. japonica HOM05D005138 ORTHO05D006318 2.1e-20 102.1 70 68.6
Atru.chr12.1279 Acer truncatum HOM05D005138 ORTHO05D006318 2.7e-20 101.7 70 68.6
DCAR_029715 Daucus carota HOM05D005138 ORTHO05D006318 2.7e-20 101.7 70 65.7
SalBow5G1163 Salvia bowleyana HOM05D005138 ORTHO05D006318 2.7e-20 101.7 68 64.7
Thecc.10G149000 Theobroma cacao HOM05D005138 ORTHO05D006318 2.7e-20 101.7 70 67.1
Glyma.13G193600 Glycine max HOM05D005138 ORTHO05D006318 6.0e-20 100.5 68 66.2
PSO135G0826 Papaver somniferum HOM05D005138 ORTHO05D006318 1.0e-19 99.8 70 62.9
PSO384G1335 Papaver somniferum HOM05D005138 ORTHO05D006318 1.0e-19 99.8 70 62.9
TWI38G0338 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 1.3e-19 99.4 72 61.1
Aqoxy2G00420 Aquilegia oxysepala HOM05D000001 ORTHO05D007291 1.7e-19 99.0 70 67.1
Aqoxy2G00421 Aquilegia oxysepala HOM05D005138 ORTHO05D006318 1.7e-19 99.0 70 67.1
AUR62031745 Chenopodium quinoa HOM05D005138 ORTHO05D006318 1.7e-19 99.0 63 71.4
AUR62032630 Chenopodium quinoa HOM05D005138 ORTHO05D006318 1.7e-19 99.0 63 71.4
Cc07_g21240 Coffea canephora HOM05D005138 ORTHO05D006318 1.7e-19 99.0 68 64.7
Glyma.15G231900 Glycine max HOM05D005138 ORTHO05D006318 1.7e-19 99.0 74 62.2
MBI13_g09225_MAGBIO Magnolia biondii HOM05D005138 ORTHO05D006318 1.7e-19 99.0 70 67.1
ECA248G2587 Erigeron canadensis HOM05D005138 ORTHO05D006318 3.0e-19 98.2 66 68.2
Glyma.09G091002 Glycine max HOM05D005138 ORTHO05D006318 3.0e-19 98.2 68 64.7
Medtr8g040150 Medicago truncatula HOM05D005138 ORTHO05D006318 3.0e-19 98.2 68 63.2
Hund13385 Selenicereus undatus HOM05D005138 ORTHO05D006318 3.0e-19 98.2 75 66.7
Nitab4.5_0010402g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 3.9e-19 97.8 68 67.6
SGA_v2.0_scaffold232G43489 Striga asiatica HOM05D005138 ORTHO05D006318 3.9e-19 97.8 69 66.7
Ca_23972_v3 Cicer arietinum L. HOM05D005138 ORTHO05D006318 5.1e-19 97.4 68 61.8
MSTRG.5074 Avicennia marina HOM05D005138 ORTHO05D006318 6.6e-19 97.1 69 63.8
Lj3g0022103 Lotus japonicus HOM05D005138 ORTHO05D006318 6.6e-19 97.1 68 63.2
Psat4g099920 Pisum sativum HOM05D005138 ORTHO05D006318 6.6e-19 97.1 68 63.2
Solyc01g022750.3 Solanum lycopersicum HOM05D005138 ORTHO05D006318 8.7e-19 96.7 68 63.2
PGSC0003DMG401025557 Solanum tuberosum HOM05D005138 ORTHO05D006318 8.7e-19 96.7 69 62.3
Sopen01g016660 Solanum pennellii HOM05D005138 ORTHO05D006318 1.5e-18 95.9 68 63.2
Ah.12g059980 Amaranthus hybridus HOM05D005138 ORTHO05D006318 1.9e-18 95.5 63 69.8
CDE04G1620 Ceratophyllum demersum HOM05D005138 ORTHO05D006318 1.9e-18 95.5 70 64.3
Hund15745 Selenicereus undatus HOM05D005138 ORTHO05D006318 2.5e-18 95.1 66 65.2
PGSC0003DMG400004276 Solanum tuberosum HOM05D005138 ORTHO05D006318 3.3e-18 94.7 67 62.7
Nitab4.5_0004389g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 4.3e-18 94.4 67 62.7
EL10Ac2g02769 Beta vulgaris HOM05D005138 ORTHO05D000392 5.6e-18 94.0 63 68.3
Sc10g0004520 Simmondsia chinensis HOM05D005138 ORTHO05D006318 5.6e-18 94.0 66 62.1
TPR.G8538 Trifolium pratense HOM05D005138 ORTHO05D006318 5.6e-18 94.0 68 61.8
CAN.G575.4 Capsicum annuum HOM05D005138 ORTHO05D006318 7.3e-18 93.6 67 61.2
QL04p018722 Quercus lobata HOM05D005138 ORTHO05D006318 7.3e-18 93.6 70 61.4
ATR1096G082 Amborella trichopoda HOM05D005138 ORTHO05D006318 9.6e-18 93.2 69 60.9
arahy.Tifrunner.gnm1.ann1.EVE7SV Arachis hypogaea HOM05D005138 ORTHO05D006318 9.6e-18 93.2 68 60.3
arahy.Tifrunner.gnm1.ann1.K7P4IE Arachis hypogaea HOM05D005138 ORTHO05D006318 9.6e-18 93.2 68 60.3
CAN.G1362.7 Capsicum annuum HOM05D005138 ORTHO05D006318 1.3e-17 92.8 72 61.1
unitig_899.g15579 Utricularia gibba HOM05D005138 ORTHO05D006318 1.6e-17 92.4 69 63.8
VMungo1127G1184 Vigna mungo HOM05D005138 ORTHO05D006318 4.8e-17 90.9 68 58.8
Potri.001G029900 Populus trichocarpa HOM05D005138 ORTHO05D006318 1.4e-16 89.4 68 63.2
Sabra01G0021400 Salix brachista HOM05D005138 ORTHO05D006318 1.8e-16 89.0 68 61.8
Ah.10g030100 Amaranthus hybridus HOM05D005138 ORTHO05D006318 2.4e-16 88.6 63 63.5
Phvul.011G203300 Phaseolus vulgaris HOM05D005138 ORTHO05D006318 3.1e-16 88.2 74 55.4
HPP92_021197 Vanilla planifolia HOM05D005138 ORTHO05D006318 3.1e-16 88.2 63 66.7
Oeu064133.1 Olea europaea HOM05D005138 ORTHO05D006318 1.7e-14 82.4 55 67.3
Nitab4.5_0000254g0180 Nicotiana tabacum HOM05D005138 ORTHO05D006318 4.2e-13 77.8 57 63.2
AUR62042115 Chenopodium quinoa HOM05D005138 ORTHO05D006318 1.6e-12 75.9 50 70.0
Peaxi162Scf00062g02216 Petunia axillaris HOM05D005138 ORTHO05D006318 1.6e-12 75.9 57 59.6
SEGI_36145 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 2.1e-12 75.5 77 49.4
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 6.0e-12 73.9 71 50.7
Mapoly0055s0110 Marchantia polymorpha HOM05D005138 ORTHO05D006318 1.3e-11 72.8 67 49.3
Pp3c1_37620 Physcomitrium patens HOM05D005138 ORTHO05D006318 4.3e-10 67.8 68 47.1
Pp3c2_3180 Physcomitrium patens HOM05D005138 ORTHO05D006318 7.4e-10 67.0 68 47.1
CBR_g52457 Chara braunii HOM05D005138 ORTHO05D006318 6.2e-09 63.9 59 45.8
Peaxi162Scf01042g00115 Petunia axillaris HOM05D005138 ORTHO05D006318 6.2e-09 63.9 43 65.1
SEGI_02182 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 1.5e-07 59.3 77 37.7
VMungo0464G2031 Vigna mungo HOM05D005138 ORTHO05D011906 2.0e-07 58.9 49 53.1
PGSC0003DMG400003395 Solanum tuberosum HOM05D005138 ORTHO05D006318 9.9e-07 56.6 48 50.0
SMO364G0517 Selaginella moellendorffii HOM05D005138 ORTHO05D006318 8.4e-06 53.5 59 37.3


User provided reference genes

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