Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04033 Brassica carinata HOM05D010701 ORTHO05D012784 1.7e-218 762.3 376 100.0
C03p45860 Brassica napus HOM05D010701 ORTHO05D012784 1.2e-211 739.6 383 96.1
BolC3t16861H Brassica oleracea HOM05D010701 ORTHO05D012784 1.2e-211 739.6 383 96.1
BraA03t12934Z Brassica rapa HOM05D010701 ORTHO05D012784 3.4e-198 694.9 384 91.1
A03p37790 Brassica napus HOM05D010701 ORTHO05D012784 4.9e-197 691.0 382 90.6
BcaB04g18718 Brassica carinata HOM05D010701 ORTHO05D012784 4.2e-164 581.6 356 82.9
Sp3g10940 Schrenkiella parvula HOM05D010701 ORTHO05D012784 8.9e-114 414.5 275 74.2
Thhalv10022242m.g Eutrema salsugineum HOM05D010701 ORTHO05D012784 1.4e-111 407.1 391 59.1
BcaB06g25512 Brassica carinata HOM05D010701 ORTHO05D012784 3.2e-111 406.0 389 57.6
A05p36680 Brassica napus HOM05D010701 ORTHO05D012784 7.1e-111 404.8 370 59.5
BraA05t22471Z Brassica rapa HOM05D010701 ORTHO05D012784 4.6e-110 402.1 370 59.5
C05p55130 Brassica napus HOM05D010701 ORTHO05D012784 1.4e-106 390.6 353 61.8
BolC5t34181H Brassica oleracea HOM05D010701 ORTHO05D012784 1.4e-106 390.6 353 61.8
AL3G24460 Arabidopsis lyrata HOM05D010701 ORTHO05D012784 1.5e-105 387.1 384 54.7
CARHR087310 Cardamine hirsuta HOM05D010701 ORTHO05D012784 1.4e-103 380.6 387 55.8
Carub.0003s1214 Capsella rubella HOM05D010701 ORTHO05D012784 7.3e-100 368.2 324 60.2
AT3G12775 Arabidopsis thaliana HOM05D010701 ORTHO05D012784 1.7e-96 357.1 290 61.7
BcaC05g29237 Brassica carinata HOM05D010701 ORTHO05D012784 6.4e-96 355.1 305 63.9
THA.LOC104826347 Tarenaya hassleriana HOM05D010701 ORTHO05D012784 4.8e-43 179.5 318 37.1
PGSC0003DMG400009018 Solanum tuberosum HOM05D000397 ORTHO05D000492 1.8e-21 107.8 279 30.1
Solyc01g079290.1 Solanum lycopersicum HOM05D000397 ORTHO05D000492 1.2e-20 105.1 276 31.2
Sopen01g031060 Solanum pennellii HOM05D000397 ORTHO05D000492 8.3e-19 99.0 276 30.1
Peaxi162Scf00770g00002 Petunia axillaris HOM05D000397 ORTHO05D000492 1.2e-17 95.1 297 29.6
Nitab4.5_0006503g0020 Nicotiana tabacum HOM05D000397 ORTHO05D000492 3.5e-17 93.6 278 29.1
vmacro02390 Vaccinium macrocarpon HOM05D000397 ORTHO05D000492 3.5e-17 93.6 269 32.3
Nitab4.5_0000222g0030 Nicotiana tabacum HOM05D000397 ORTHO05D000492 6.0e-17 92.8 291 29.6
BcaB07g33862 Brassica carinata HOM05D010701 ORTHO05D012784 1.3e-16 91.7 86 55.8
Migut.D00066 Erythranthe guttata HOM05D000397 ORTHO05D000492 8.6e-16 89.0 281 27.8
MD17G1277900 Malus domestica HOM05D000397 ORTHO05D000492 8.6e-16 89.0 257 31.1
CAN.G293.17 Capsicum annuum HOM05D000397 ORTHO05D000492 5.6e-15 86.3 277 29.6
Hma1.2p1_0486F.1_g163480 Hydrangea macrophylla HOM05D000397 ORTHO05D000492 7.3e-15 85.9 214 31.3
Potri.013G108500 Populus trichocarpa HOM05D000397 ORTHO05D000492 2.1e-14 84.3 304 28.9
Aqoxy2G02704 Aquilegia oxysepala HOM05D000397 ORTHO05D000492 6.4e-11 72.8 298 28.5
Oeu031894.1 Olea europaea HOM05D000397 ORTHO05D000492 1.1e-10 72.0 169 33.7
SGA_v2.0_scaffold20G09196 Striga asiatica HOM05D000397 ORTHO05D000492 1.1e-10 72.0 128 35.9
Lj3g0023036 Lotus japonicus HOM05D000397 ORTHO05D000492 5.4e-10 69.7 236 27.5
FvH4_4g19900 Fragaria vesca HOM05D000397 ORTHO05D000492 7.1e-10 69.3 182 33.5
Prupe.3G008800 Prunus persica HOM05D000397 ORTHO05D000492 3.5e-09 67.0 311 24.8
RcHm_v2.0_Chr4g0425521 Rosa chinensis HOM05D000397 ORTHO05D000492 4.6e-09 66.6 227 28.6
Lj3g0016321 Lotus japonicus HOM05D000397 ORTHO05D000492 1.7e-08 64.7 228 28.9
arahy.Tifrunner.gnm1.ann1.FE9WNQ Arachis hypogaea HOM05D000397 ORTHO05D000492 2.3e-08 64.3 288 26.7
SEGI_01748 Sequoiadendron giganteum HOM05D000397 ORTHO05D000492 2.3e-08 64.3 288 26.4
Medtr7g047620 Medicago truncatula HOM05D000397 ORTHO05D000492 3.0e-08 63.9 227 25.6
Medtr7g451800 Medicago truncatula HOM05D000397 ORTHO05D000492 3.0e-08 63.9 227 25.6
ATR0737G023 Amborella trichopoda HOM05D000397 ORTHO05D000492 3.9e-08 63.5 188 29.8
VMungo1215G2200 Vigna mungo HOM05D000397 ORTHO05D000492 3.9e-08 63.5 222 28.8
arahy.Tifrunner.gnm1.ann1.QBTG1H Arachis hypogaea HOM05D000397 ORTHO05D000492 5.1e-08 63.2 288 26.7
Zm00001eb125670 Zea mays HOM05D000397 ORTHO05D000492 5.1e-08 63.2 224 26.8
Glyma.12G224200 Glycine max HOM05D000397 ORTHO05D000492 8.6e-08 62.4 237 27.4
VMungo0251G3143 Vigna mungo HOM05D000397 ORTHO05D000492 8.6e-08 62.4 238 27.3
Actinidia40382 Actinidia chinensis HOM05D000397 ORTHO05D000492 1.1e-07 62.0 135 35.6
CiPaw.02G074200 Carya illinoinensis HOM05D000397 ORTHO05D000492 1.1e-07 62.0 243 28.0
Aqoxy5G02232 Aquilegia oxysepala HOM05D000397 ORTHO05D000492 1.5e-07 61.6 228 27.6
COL.COLO4_31824 Corchorus olitorius HOM05D000397 ORTHO05D000492 1.5e-07 61.6 124 36.3
MELO3C016701.2 Cucumis melo HOM05D000397 ORTHO05D000492 1.5e-07 61.6 232 28.0
Pp3c14_3350 Physcomitrium patens HOM05D000397 ORTHO05D000492 1.5e-07 61.6 230 27.4
Sed0022316 Sechium edule HOM05D000397 ORTHO05D000492 1.5e-07 61.6 122 36.1
Ca_24283_v3 Cicer arietinum L. HOM05D000397 ORTHO05D000492 1.9e-07 61.2 236 25.8
FAN11G0927 Fragaria x ananassa HOM05D000397 ORTHO05D000492 2.5e-07 60.8 253 26.9
RcHm_v2.0_Chr4g0415111 Rosa chinensis HOM05D000397 ORTHO05D000492 2.5e-07 60.8 172 29.1
TPR.G40091 Trifolium pratense HOM05D000397 ORTHO05D000492 2.5e-07 60.8 238 26.9
FAN12G3658 Fragaria x ananassa HOM05D000397 ORTHO05D000492 3.3e-07 60.5 149 32.2
Phvul.003G115200 Phaseolus vulgaris HOM05D000397 ORTHO05D000492 3.3e-07 60.5 227 28.2
QL06p012565 Quercus lobata HOM05D000397 ORTHO05D000492 3.3e-07 60.5 239 27.6
COL.COLO4_34604 Corchorus olitorius HOM05D000397 ORTHO05D000492 4.3e-07 60.1 82 43.9
Glyma.15G074200 Glycine max HOM05D000397 ORTHO05D000492 4.3e-07 60.1 180 29.4
PSO478G3495 Papaver somniferum HOM05D000397 ORTHO05D000492 4.3e-07 60.1 287 26.1
Ca_11588_v3 Cicer arietinum L. HOM05D000397 ORTHO05D000492 5.6e-07 59.7 225 26.2
TAR365G0656 Trochodendron aralioides HOM05D000397 ORTHO05D000492 5.6e-07 59.7 225 27.1
Zm00001eb295480 Zea mays HOM05D000397 ORTHO05D000492 5.6e-07 59.7 235 29.4
Cpa.g.sc80.59 Carica papaya HOM05D000397 ORTHO05D000492 7.3e-07 59.3 228 26.3
Cpa.g.sc9.50 Carica papaya HOM05D000397 ORTHO05D000492 7.3e-07 59.3 186 30.1
Glyma.07G239100 Glycine max HOM05D000397 ORTHO05D000492 7.3e-07 59.3 229 28.4
TWI53G1864 Tripterygium wilfordii HOM05D000397 ORTHO05D000492 7.3e-07 59.3 239 25.9
Nn1g06535 Nelumbo nucifera HOM05D000397 ORTHO05D000492 9.5e-07 58.9 188 27.7
ATR0589G029 Amborella trichopoda HOM05D000397 ORTHO05D000492 1.2e-06 58.5 196 29.1
CARHR107210 Cardamine hirsuta HOM05D000397 ORTHO05D000492 1.2e-06 58.5 212 25.9
Cc03_g00720 Coffea canephora HOM05D000397 ORTHO05D000492 1.2e-06 58.5 128 32.8
Os01g0233900 Oryza sativa ssp. japonica HOM05D000397 ORTHO05D000492 1.2e-06 58.5 125 35.2
Os05g0557600 Oryza sativa ssp. japonica HOM05D000397 ORTHO05D000492 1.2e-06 58.5 242 27.7
PGR004G0497 Punica granatum HOM05D000397 ORTHO05D000492 1.2e-06 58.5 244 27.0
SEGI_09056 Sequoiadendron giganteum HOM05D000397 ORTHO05D000492 1.2e-06 58.5 223 26.5
SEGI_31584 Sequoiadendron giganteum HOM05D000397 ORTHO05D000492 1.2e-06 58.5 223 26.5
Dinv44278 Davidia involucrata HOM05D000397 ORTHO05D000492 1.6e-06 58.2 204 28.9
Lsat_1_v5_gn_9_96180 Lactuca sativa HOM05D000397 ORTHO05D000492 1.6e-06 58.2 128 31.2
SGA_v2.0_scaffold73G24266 Striga asiatica HOM05D000397 ORTHO05D000492 1.6e-06 58.2 122 32.8
DCAR_022538 Daucus carota HOM05D000397 ORTHO05D000492 2.1e-06 57.8 228 27.6
ECA240G0650 Erigeron canadensis HOM05D000397 ORTHO05D002023 2.1e-06 57.8 126 31.0
PSO063G1285 Papaver somniferum HOM05D000397 ORTHO05D000492 2.1e-06 57.8 125 32.0
Phvul.002G183500 Phaseolus vulgaris HOM05D000397 ORTHO05D000492 2.1e-06 57.8 238 26.9
CsaV3_4G033720 Cucumis sativus L. HOM05D000397 ORTHO05D000492 2.8e-06 57.4 122 34.4
Gohir.D10G026600 Gossypium hirsutum HOM05D000397 ORTHO05D000492 2.8e-06 57.4 176 29.5
Gorai.011G027900 Gossypium raimondii HOM05D000397 ORTHO05D000492 2.8e-06 57.4 176 29.5
Medtr4g020620 Medicago truncatula HOM05D000397 ORTHO05D000492 2.8e-06 57.4 261 27.6
Medtr8g060700 Medicago truncatula HOM05D000397 ORTHO05D000492 2.8e-06 57.4 235 25.5
Nitab4.5_0002294g0060 Nicotiana tabacum HOM05D000397 ORTHO05D000492 2.8e-06 57.4 186 28.5
Duzib235G1457 Durio zibethinus HOM05D000397 ORTHO05D000492 3.6e-06 57.0 78 42.3
FvH4_3g20000 Fragaria vesca HOM05D000397 ORTHO05D000492 3.6e-06 57.0 188 29.3
FAN11G2156 Fragaria x ananassa HOM05D000397 ORTHO05D000492 3.6e-06 57.0 188 29.3
FAN25G3589 Fragaria x ananassa HOM05D000397 ORTHO05D000492 3.6e-06 57.0 235 27.2
Glyma.13G239100 Glycine max HOM05D000397 ORTHO05D000492 3.6e-06 57.0 177 29.9
Medtr7g047570 Medicago truncatula HOM05D000397 ORTHO05D000492 3.6e-06 57.0 229 25.3
Medtr7g451770 Medicago truncatula HOM05D000397 ORTHO05D000492 3.6e-06 57.0 229 25.3
PSO017G6077 Papaver somniferum HOM05D000397 ORTHO05D000492 3.6e-06 57.0 110 32.7
Thecc.04G302300 Theobroma cacao HOM05D000397 ORTHO05D000492 3.6e-06 57.0 190 27.4
TWI36G1486 Tripterygium wilfordii HOM05D000397 ORTHO05D000492 3.6e-06 57.0 283 26.9
ECA233G1257 Erigeron canadensis HOM05D000397 ORTHO05D000492 4.7e-06 56.6 226 26.5
FAN21G0027 Fragaria x ananassa HOM05D000397 ORTHO05D000492 4.7e-06 56.6 188 29.3
Lj6g0003717 Lotus japonicus HOM05D000397 ORTHO05D000492 4.7e-06 56.6 288 26.7
Lalb_Chr16g0383751 Lupinus albus HOM05D000397 ORTHO05D000492 4.7e-06 56.6 190 28.4
Lalb_Chr25g0286391 Lupinus albus HOM05D000397 ORTHO05D000492 4.7e-06 56.6 227 26.9
Phvul.005G072300 Phaseolus vulgaris HOM05D000397 ORTHO05D000492 4.7e-06 56.6 237 25.7
Potri.010G146500 Populus trichocarpa HOM05D000397 ORTHO05D000492 4.7e-06 56.6 188 27.7
RcHm_v2.0_Chr5g0033801 Rosa chinensis HOM05D000397 ORTHO05D000492 4.7e-06 56.6 234 28.6
Duzib192G0710 Durio zibethinus HOM05D000397 ORTHO05D000492 6.2e-06 56.2 78 42.3
Psat7g082320 Pisum sativum HOM05D000397 ORTHO05D000492 6.2e-06 56.2 243 27.6
Sed0024264 Sechium edule HOM05D000397 ORTHO05D000492 6.2e-06 56.2 189 29.1
COL.COLO4_34602 Corchorus olitorius HOM05D000397 ORTHO05D000492 8.1e-06 55.8 78 42.3
Lj4g0012985 Lotus japonicus HOM05D000397 ORTHO05D000492 8.1e-06 55.8 235 27.2


User provided reference genes

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