Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04022 Brassica carinata HOM05D000357 ORTHO05D000242 4.7e-71 271.2 145 100.0
BcaB04g18711 Brassica carinata HOM05D000357 ORTHO05D000242 1.5e-37 159.8 84 100.0
BcaC01g04021 Brassica carinata HOM05D000357 ORTHO05D000242 2.2e-36 156.0 84 98.8
C05p04040 Brassica napus HOM05D000357 ORTHO05D000242 4.0e-30 135.2 91 79.1
BolC5t29182H Brassica oleracea HOM05D000357 ORTHO05D000242 9.0e-30 134.0 91 79.1
BraA01t04120Z Brassica rapa HOM05D000357 ORTHO05D000242 9.0e-30 134.0 91 83.5
BraA03t12927Z Brassica rapa HOM05D000357 ORTHO05D000242 1.2e-29 133.7 93 79.6
BcaC05g24347 Brassica carinata HOM05D000357 ORTHO05D000242 2.6e-29 132.5 91 79.1
BNapus_Darmor_BZH_scaffold_149p00160 Brassica napus HOM05D000357 ORTHO05D000242 2.6e-29 132.5 84 88.1
BolC4t22198H Brassica oleracea HOM05D000357 ORTHO05D000242 4.5e-29 131.7 91 76.9
BolC3t16852H Brassica oleracea HOM05D000357 ORTHO05D000242 5.8e-29 131.3 91 76.9
BcaC01g04023 Brassica carinata HOM05D000357 ORTHO05D000242 9.9e-29 130.6 91 75.8
C01p52540 Brassica napus HOM05D000357 ORTHO05D000242 9.9e-29 130.6 84 86.9
C03p45770 Brassica napus HOM05D000357 ORTHO05D000242 9.9e-29 130.6 91 75.8
A03p37720 Brassica napus HOM05D000357 ORTHO05D000242 1.7e-28 129.8 92 78.3
BolC1t05193H Brassica oleracea HOM05D000357 ORTHO05D000242 3.8e-28 128.6 84 85.7
Sp3g10770 Schrenkiella parvula HOM05D000357 ORTHO05D000242 3.8e-28 128.6 85 85.9
A05p36860 Brassica napus HOM05D000357 ORTHO05D000242 5.5e-27 124.8 86 81.4
BraA05t22487Z Brassica rapa HOM05D000357 ORTHO05D000242 5.5e-27 124.8 86 81.4
BcaC05g29253 Brassica carinata HOM05D000357 ORTHO05D000242 7.1e-27 124.4 86 81.4
BolC5t34197H Brassica oleracea HOM05D000357 ORTHO05D000242 7.1e-27 124.4 86 81.4
Thhalv10021683m.g Eutrema salsugineum HOM05D000357 ORTHO05D000242 1.2e-26 123.6 85 82.4
AT3G12630 Arabidopsis thaliana HOM05D000357 ORTHO05D000242 2.7e-26 122.5 86 82.6
C05p55320 Brassica napus HOM05D000357 ORTHO05D000242 2.7e-26 122.5 86 80.2
BcaB06g25528 Brassica carinata HOM05D000357 ORTHO05D000242 4.6e-26 121.7 87 79.3
CARHR087140 Cardamine hirsuta HOM05D000357 ORTHO05D000242 1.0e-25 120.6 91 72.5
Carub.0003s1198 Capsella rubella HOM05D000357 ORTHO05D000242 3.0e-25 119.0 96 71.9
AL3G24300 Arabidopsis lyrata HOM05D000357 ORTHO05D000242 2.8e-23 112.5 93 71.0
BcaB04g21049 Brassica carinata HOM05D000357 ORTHO05D000242 3.7e-23 112.1 91 72.5
THA.LOC104819063 Tarenaya hassleriana HOM05D000357 ORTHO05D000242 3.1e-14 82.4 112 50.0
Hma1.2p1_0293F.1_g116350 Hydrangea macrophylla HOM05D000357 ORTHO05D000242 2.0e-13 79.7 94 56.4
Aa31sc361G20 Aethionema arabicum HOM05D000357 ORTHO05D000242 2.6e-13 79.3 95 52.6
Sed0009179 Sechium edule HOM05D000357 ORTHO05D000242 4.5e-13 78.6 78 57.7
PGR031G0437 Punica granatum HOM05D000357 ORTHO05D000242 1.3e-12 77.0 53 75.5
ClCG09G004300 Citrullus lanatus HOM05D000357 ORTHO05D000242 2.9e-12 75.9 107 51.4
CsaV3_7G031220 Cucumis sativus L. HOM05D000357 ORTHO05D000242 2.9e-12 75.9 107 52.3
Duzib133G0335 Durio zibethinus HOM05D000357 ORTHO05D000242 2.9e-12 75.9 57 70.2
Duzib138G1681 Durio zibethinus HOM05D000357 ORTHO05D000242 2.9e-12 75.9 52 76.9
Thecc.01G413200 Theobroma cacao HOM05D000357 ORTHO05D000242 2.9e-12 75.9 52 76.9
TWI53G1759 Tripterygium wilfordii HOM05D000357 ORTHO05D000242 6.5e-12 74.7 116 43.1
Manes.07G004400 Manihot esculenta HOM05D000357 ORTHO05D000242 1.1e-11 73.9 117 48.7
Nitab4.5_0003361g0030 Nicotiana tabacum HOM05D000357 ORTHO05D000242 1.1e-11 73.9 94 50.0
Prupe.2G010300 Prunus persica HOM05D000357 ORTHO05D000242 1.1e-11 73.9 102 49.0
Sed0022540 Sechium edule HOM05D000357 ORTHO05D000242 1.1e-11 73.9 86 58.1
MELO3C023536.2 Cucumis melo HOM05D000357 ORTHO05D000242 1.4e-11 73.6 107 51.4
Duzib268G1028 Durio zibethinus HOM05D000357 ORTHO05D000242 1.4e-11 73.6 81 56.8
Sopen01g033950 Solanum pennellii HOM05D000357 ORTHO05D000242 1.4e-11 73.6 128 43.0
THA.LOC104826671 Tarenaya hassleriana HOM05D000357 ORTHO05D000242 1.4e-11 73.6 93 51.6
RcHm_v2.0_Chr1g0314971 Rosa chinensis HOM05D000357 ORTHO05D000242 1.9e-11 73.2 54 72.2
TWI73G1012 Tripterygium wilfordii HOM05D000357 ORTHO05D000242 1.9e-11 73.2 53 71.7
vmacro13653 Vaccinium macrocarpon HOM05D000357 ORTHO05D000242 1.9e-11 73.2 76 60.5
Cpa.g.sc2168.1 Carica papaya HOM05D000357 ORTHO05D000242 2.5e-11 72.8 52 73.1
Psat5g204600 Pisum sativum HOM05D000357 ORTHO05D000242 2.5e-11 72.8 104 48.1
Solyc01g086960.3 Solanum lycopersicum HOM05D000357 ORTHO05D000242 2.5e-11 72.8 128 43.0
CSS0031666 Camellia sinensis var. sinensis HOM05D000357 ORTHO05D000242 3.2e-11 72.4 97 49.5
Gohir.A08G145500 Gossypium hirsutum HOM05D000357 ORTHO05D000242 3.2e-11 72.4 50 76.0
Gorai.004G173900 Gossypium raimondii HOM05D000357 ORTHO05D000242 3.2e-11 72.4 50 76.0
MD02G1314600 Malus domestica HOM05D000357 ORTHO05D000242 3.2e-11 72.4 50 78.0
Sed0001969 Sechium edule HOM05D000357 ORTHO05D000242 3.2e-11 72.4 77 57.1
Sed0020278 Sechium edule HOM05D000357 ORTHO05D000242 3.2e-11 72.4 73 61.6
ClCG10G012480 Citrullus lanatus HOM05D000357 ORTHO05D000242 4.2e-11 72.0 54 70.4
CsaV3_3G032250 Cucumis sativus L. HOM05D000357 ORTHO05D000242 4.2e-11 72.0 54 70.4
CANSAT80G1702 Cannabis sativa HOM05D000357 ORTHO05D000242 5.5e-11 71.6 102 48.0
Cfa010742 Carpinus fangiana HOM05D000357 ORTHO05D000242 5.5e-11 71.6 98 43.9
HanXRQChr11g0341591 Helianthus annuus HOM05D000357 ORTHO05D000242 5.5e-11 71.6 106 48.1
Manes.10G145700 Manihot esculenta HOM05D000357 ORTHO05D000242 5.5e-11 71.6 52 71.2
Nitab4.5_0000634g0020 Nicotiana tabacum HOM05D000357 ORTHO05D000242 5.5e-11 71.6 123 43.9
TWI09G1047 Tripterygium wilfordii HOM05D000357 ORTHO05D000242 5.5e-11 71.6 109 45.9
Ciclev10032882m.g Citrus clementina HOM05D000357 ORTHO05D000242 7.2e-11 71.2 50 74.0
Gohir.D08G166500 Gossypium hirsutum HOM05D000357 ORTHO05D000242 7.2e-11 71.2 50 74.0
Hma1.2p1_1285F.1_g272920 Hydrangea macrophylla HOM05D000357 ORTHO05D000242 7.2e-11 71.2 105 49.5
Lsat_1_v5_gn_4_46060 Lactuca sativa HOM05D000357 ORTHO05D000242 7.2e-11 71.2 81 55.6
Lj9P629T97 Lonicera japonica HOM05D000357 ORTHO05D000242 7.2e-11 71.2 80 58.8
THA.LOC104809875 Tarenaya hassleriana HOM05D000357 ORTHO05D000242 9.4e-11 70.9 106 48.1
FvH4_7g00810 Fragaria vesca HOM05D000357 ORTHO05D000242 1.2e-10 70.5 57 66.7
FAN01G2650 Fragaria x ananassa HOM05D000357 ORTHO05D000242 1.2e-10 70.5 57 66.7
FAN03G1796 Fragaria x ananassa HOM05D000357 ORTHO05D000242 1.2e-10 70.5 57 66.7
FAN06G3566 Fragaria x ananassa HOM05D000357 ORTHO05D000242 1.2e-10 70.5 57 66.7
FAN10G0453 Fragaria x ananassa HOM05D000357 ORTHO05D000242 1.2e-10 70.5 57 66.7
Glyma.15G272300 Glycine max HOM05D000357 ORTHO05D000242 1.2e-10 70.5 112 45.5
MD07G1007300 Malus domestica HOM05D000357 ORTHO05D000242 1.2e-10 70.5 50 76.0
Rhsim07G0054500 Rhododendron simsii HOM05D000357 ORTHO05D000242 1.6e-10 70.1 85 51.8
Sc14g0005100 Simmondsia chinensis HOM05D000357 ORTHO05D000242 1.6e-10 70.1 83 55.4
Eucgr.G03392 Eucalyptus grandis HOM05D000357 ORTHO05D000242 2.1e-10 69.7 50 74.0
Gohir.A08G027500 Gossypium hirsutum HOM05D000357 ORTHO05D000242 2.1e-10 69.7 98 50.0
TAR623G0767 Trochodendron aralioides HOM05D000357 ORTHO05D000242 2.1e-10 69.7 50 74.0
Sabra09G0047200 Salix brachista HOM05D000357 ORTHO05D000242 3.6e-10 68.9 111 48.6
TAR369G0108 Trochodendron aralioides HOM05D000357 ORTHO05D000242 3.6e-10 68.9 70 58.6
FAN16G3171 Fragaria x ananassa HOM05D000357 ORTHO05D000242 4.6e-10 68.6 57 64.9
Potri.001G269400 Populus trichocarpa HOM05D000357 ORTHO05D000242 4.6e-10 68.6 116 45.7
GSVIVG01032063001 Vitis vinifera HOM05D000357 ORTHO05D000242 4.6e-10 68.6 50 72.0
MELO3C023965.2 Cucumis melo HOM05D000357 ORTHO05D000242 6.1e-10 68.2 118 44.1
Lj7A569T68 Lonicera japonica HOM05D000357 ORTHO05D000242 6.1e-10 68.2 77 58.4
Lalb_Chr25g0283161 Lupinus albus HOM05D000357 ORTHO05D000242 6.1e-10 68.2 71 56.3
PGSC0003DMG400006814 Solanum tuberosum HOM05D000357 ORTHO05D000242 6.1e-10 68.2 94 50.0
Lsat_1_v5_gn_1_109500 Lactuca sativa HOM05D000357 ORTHO05D000242 7.9e-10 67.8 75 57.3
CiPaw.13G003400 Carya illinoinensis HOM05D000357 ORTHO05D000242 1.0e-09 67.4 50 70.0
Dinv09370 Davidia involucrata HOM05D000357 ORTHO05D000242 1.0e-09 67.4 93 48.4
Lalb_Chr19g0132081 Lupinus albus HOM05D000357 ORTHO05D000242 1.0e-09 67.4 112 45.5
Gorai.004G036200 Gossypium raimondii HOM05D000357 ORTHO05D000242 1.4e-09 67.0 98 49.0
Cc02_g27690 Coffea canephora HOM05D000357 ORTHO05D000242 1.8e-09 66.6 53 69.8
Haze_03232 Corylus avellana HOM05D000357 ORTHO05D000242 1.8e-09 66.6 50 68.0
Gohir.D08G038200 Gossypium hirsutum HOM05D000357 ORTHO05D000242 1.8e-09 66.6 98 49.0
HanXRQChr01g0017281 Helianthus annuus HOM05D000357 ORTHO05D000242 1.8e-09 66.6 51 74.5
Glyma.08G153200 Glycine max HOM05D000357 ORTHO05D000242 2.3e-09 66.2 81 48.1
arahy.Tifrunner.gnm1.ann1.TDL4M4 Arachis hypogaea HOM05D000357 ORTHO05D000242 3.0e-09 65.9 103 44.7
TPR.G12251 Trifolium pratense HOM05D000357 ORTHO05D000242 3.0e-09 65.9 74 54.1
Atru.chr11.2642 Acer truncatum HOM05D000357 ORTHO05D000242 3.9e-09 65.5 76 55.3
Actinidia31053 Actinidia chinensis HOM05D000357 ORTHO05D000242 3.9e-09 65.5 86 55.8
COL.COLO4_23917 Corchorus olitorius HOM05D000357 ORTHO05D000242 3.9e-09 65.5 52 69.2
arahy.Tifrunner.gnm1.ann1.7W0SSB Arachis hypogaea HOM05D000357 ORTHO05D000242 5.1e-09 65.1 103 44.7
CSS0008070 Camellia sinensis var. sinensis HOM05D000357 ORTHO05D000242 5.1e-09 65.1 70 57.1
VMungo1080G0215 Vigna mungo HOM05D000357 ORTHO05D000242 5.1e-09 65.1 47 70.2
Medtr3g028010 Medicago truncatula HOM05D000357 ORTHO05D000242 8.8e-09 64.3 71 60.6
HanXRQChr12g0360001 Helianthus annuus HOM05D000357 ORTHO05D000242 1.1e-08 63.9 93 51.6
HanXRQChr12g0360021 Helianthus annuus HOM05D000357 ORTHO05D000242 1.1e-08 63.9 93 51.6
Dinv43459 Davidia involucrata HOM05D000357 ORTHO05D000242 2.5e-08 62.8 79 54.4
HanXRQChr17g0563511 Helianthus annuus HOM05D000357 ORTHO05D000242 2.5e-08 62.8 83 53.0
MD02G1222800 Malus domestica HOM05D000357 ORTHO05D000242 4.3e-08 62.0 100 44.0
Phvul.005G036401 Phaseolus vulgaris HOM05D000357 ORTHO05D000242 5.7e-08 61.6 115 43.5
Nitab4.5_0001676g0030 Nicotiana tabacum HOM05D000357 ORTHO05D000242 9.7e-08 60.8 57 57.9
QL04p005431 Quercus lobata HOM05D000357 ORTHO05D000242 9.7e-08 60.8 50 64.0
Lalb_Chr01g0015251 Lupinus albus HOM05D000357 ORTHO05D000242 1.3e-07 60.5 117 37.6
Nn2g15406 Nelumbo nucifera HOM05D000357 ORTHO05D000242 1.3e-07 60.5 70 55.7
Nn7g36184 Nelumbo nucifera HOM05D000357 ORTHO05D000242 1.3e-07 60.5 70 55.7
Actinidia36718 Actinidia chinensis HOM05D000357 ORTHO05D000242 4.8e-07 58.5 48 64.6
SalBow5G5018 Salvia bowleyana HOM05D000357 ORTHO05D000242 6.3e-07 58.2 108 41.7
MSTRG.5013 Avicennia marina HOM05D000357 ORTHO05D000242 1.1e-06 57.4 100 44.0
Lalb_Chr01g0008101 Lupinus albus HOM05D000357 ORTHO05D000242 1.1e-06 57.4 94 47.9
MSTRG.28078 Avicennia marina HOM05D000357 ORTHO05D000242 1.4e-06 57.0 95 48.4
MBI04_g13616_MAGBIO Magnolia biondii HOM05D000146 ORTHO05D002110 2.4e-06 56.2 86 48.8
Ca_14365_v3 Cicer arietinum L. HOM05D000357 ORTHO05D000242 5.3e-06 55.1 113 39.8
HPP92_015770 Vanilla planifolia HOM05D000357 ORTHO05D000242 5.3e-06 55.1 91 41.8
TAR633G0894 Trochodendron aralioides HOM05D000357 ORTHO05D000242 6.9e-06 54.7 104 40.4


User provided reference genes

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