Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 7.8e-172 607.1 313 100.0
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 8.7e-171 603.6 312 99.7
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 9.6e-170 600.1 313 99.0
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 4.7e-169 597.8 313 98.1
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 4.7e-169 597.8 313 98.1
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 6.4e-166 587.4 313 95.8
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 4.5e-159 564.7 320 91.9
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 4.5e-159 564.7 320 91.9
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 4.5e-159 564.7 320 91.9
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 3.8e-158 561.6 320 90.3
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 4.9e-158 561.2 320 91.9
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 4.9e-158 561.2 320 91.9
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 5.1e-155 551.2 323 88.9
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 4.3e-154 548.1 321 89.7
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 4.3e-154 548.1 321 89.7
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 4.3e-154 548.1 321 89.7
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 3.4e-151 538.5 323 87.3
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 7.6e-151 537.3 323 87.6
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 7.6e-151 537.3 321 88.8
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 2.9e-150 535.4 320 88.4
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 3.2e-149 531.9 314 88.5
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 9.3e-149 530.4 323 86.7
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 4.8e-145 518.1 323 83.6
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 8.4e-142 507.3 324 83.3
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 7.1e-141 504.2 323 79.9
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.2e-140 503.4 320 82.5
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 2.3e-139 499.2 321 80.1
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 1.3e-137 493.4 324 79.0
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 1.6e-132 476.5 320 80.0
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 4.1e-128 461.8 315 76.5
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 3.6e-124 448.7 320 74.7
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 2.8e-89 332.8 322 56.2
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 3.7e-89 332.4 324 55.9
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 4.9e-89 332.0 323 54.8
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 4.9e-89 332.0 325 56.3
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 4.1e-88 328.9 323 54.5
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 1.6e-87 327.0 323 54.2
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 1.0e-86 324.3 316 54.1
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.3e-86 323.9 320 55.0
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 1.3e-86 323.9 316 55.1
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.9e-86 322.8 316 56.6
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.1e-85 320.9 330 53.6
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 4.3e-85 318.9 321 53.3
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 2.1e-84 316.6 325 51.4
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 3.6e-84 315.8 304 56.2
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 1.7e-81 307.0 315 54.9
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 4.9e-81 305.4 301 53.2
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 1.4e-80 303.9 320 53.1
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 1.4e-80 303.9 317 54.9
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.9e-80 303.5 324 50.9
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 7.0e-80 301.6 317 52.4
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.2e-79 300.8 324 50.6
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 2.7e-79 299.7 306 53.3
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.0e-78 297.7 320 52.5
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.7e-78 297.0 330 51.5
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.9e-77 293.5 324 49.7
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 2.5e-77 293.1 215 74.0
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 5.6e-77 292.0 320 50.9
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 5.6e-77 292.0 320 50.0
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 9.5e-77 291.2 328 48.5
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 9.5e-77 291.2 320 51.9
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 4.7e-76 288.9 321 50.8
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 6.2e-76 288.5 321 50.5
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 1.1e-75 287.7 291 52.9
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 1.1e-75 287.7 324 48.5
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 5.2e-75 285.4 316 50.3
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 5.2e-75 285.4 319 49.5
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 6.8e-75 285.0 324 50.6
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 8.9e-75 284.6 328 49.7
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 2.6e-74 283.1 320 48.4
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 3.4e-74 282.7 319 49.5
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 3.4e-74 282.7 320 49.7
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 4.4e-74 282.3 282 52.1
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 9.8e-74 281.2 323 49.2
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 1.3e-73 280.8 317 49.8
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 1.7e-73 280.4 327 48.6
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 2.9e-73 279.6 322 48.4
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 2.9e-73 279.6 301 49.5
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 3.7e-73 279.3 266 55.3
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 4.9e-73 278.9 325 48.9
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 8.3e-73 278.1 362 47.8
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 1.1e-72 277.7 317 48.6
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 1.9e-72 276.9 348 50.9
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 7.0e-72 275.0 318 48.7
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 9.2e-72 274.6 317 48.6
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 9.2e-72 274.6 290 52.8
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 1.2e-71 274.2 324 49.4
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 2.1e-71 273.5 323 47.4
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 2.1e-71 273.5 318 48.4
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 3.5e-71 272.7 290 52.8
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 4.6e-71 272.3 319 48.0
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 4.6e-71 272.3 322 49.4
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 1.0e-70 271.2 321 46.4
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 3.0e-70 269.6 324 46.3
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 3.0e-70 269.6 322 49.1
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 5.1e-70 268.9 319 48.6
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 5.1e-70 268.9 325 48.9
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 1.1e-69 267.7 331 45.0
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 1.5e-69 267.3 322 46.9
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 1.9e-69 266.9 316 46.8
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 5.6e-69 265.4 327 46.8
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 9.5e-69 264.6 320 47.5
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 1.6e-68 263.8 321 48.0
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 1.1e-67 261.2 324 45.4
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 1.1e-67 261.2 318 48.4
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 1.4e-67 260.8 325 48.6
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 1.4e-67 260.8 297 47.8
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 3.1e-67 259.6 292 48.6
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 3.1e-67 259.6 315 46.0
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 2.0e-66 256.9 318 45.6
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 2.0e-66 256.9 321 46.7
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 2.6e-66 256.5 316 46.5
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 3.4e-66 256.1 317 44.8
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 1.3e-65 254.2 290 48.3
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 2.9e-65 253.1 323 44.9
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 3.7e-65 252.7 318 45.9
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 8.3e-65 251.5 325 45.2
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 8.3e-65 251.5 317 44.5
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 9.2e-64 248.1 308 46.8
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 9.2e-64 248.1 322 46.6
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 1.6e-63 247.3 419 39.1
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 7.3e-61 238.4 324 43.5
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 7.3e-61 238.4 402 41.5
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 4.7e-60 235.7 324 43.2
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 1.1e-59 234.6 322 44.1
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 1.4e-59 234.2 258 48.1
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 2.4e-59 233.4 257 50.6
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 3.1e-59 233.0 313 42.5
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 5.2e-59 232.3 287 46.0
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 5.2e-59 232.3 257 50.6
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 1.2e-58 231.1 315 43.2
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 1.7e-57 227.3 310 41.9
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.2e-57 226.9 261 49.4
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 1.4e-56 224.2 307 41.7
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 4.2e-56 222.6 128 89.1
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.2e-55 221.1 128 88.3
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 1.5e-53 214.2 322 43.8
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 4.9e-49 199.1 343 39.1
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 3.8e-41 172.9 226 44.7
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 3.0e-38 163.3 249 36.9
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 6.7e-38 162.2 119 73.1
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 1.0e-33 148.3 321 31.5
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 1.9e-32 144.1 155 50.3
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 2.7e-31 140.2 323 31.9
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 1.0e-30 138.3 166 48.2
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 5.1e-30 136.0 161 49.1
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 7.4e-29 132.1 316 32.6
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 2.4e-27 127.1 322 29.8
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 4.3e-21 106.3 194 36.6
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.8e-19 100.9 119 47.9
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.9e-16 90.9 89 53.9
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.9e-16 90.9 89 53.9
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.2e-15 88.2 95 48.4
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 7.9e-15 85.5 99 48.5
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 4.3e-13 79.7 84 45.2
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 3.7e-12 76.6 69 49.3
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 3.7e-12 76.6 67 50.7
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 3.1e-11 73.6 67 49.3
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 2.9e-09 67.0 136 33.1
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 5.0e-09 66.2 105 41.0
Cre09.g392616 Chlamydomonas reinhardtii HOM05D004300 ORTHO05D005171 2.1e-07 60.8 318 21.4
Zm00001eb132370 Zea mays HOM05D004300 ORTHO05D005171 1.4e-06 58.2 102 30.4


User provided reference genes

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