Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03983 Brassica carinata HOM05D005609 ORTHO05D006871 1.8e-114 416.0 217 100.0
BcaC01g05159 Brassica carinata HOM05D005609 ORTHO05D006871 2.5e-76 289.3 183 85.2
BolC6t40388H Brassica oleracea HOM05D005609 ORTHO05D006871 6.2e-59 231.5 245 61.2
Sp5g34990 Schrenkiella parvula HOM05D005609 ORTHO05D006871 4.4e-57 225.3 234 59.8
BcaC08g47546 Brassica carinata HOM05D005609 ORTHO05D006871 9.9e-57 224.2 243 60.5
BraA07t31997Z Brassica rapa HOM05D005609 ORTHO05D006871 4.9e-56 221.9 244 59.8
A07p44900 Brassica napus HOM05D005609 ORTHO05D006871 1.1e-55 220.7 245 58.8
Thhalv10018566m.g Eutrema salsugineum HOM05D005609 ORTHO05D006871 1.9e-55 219.9 214 62.1
CARHR073710 Cardamine hirsuta HOM05D005609 ORTHO05D006871 4.2e-55 218.8 234 59.0
C06p29500 Brassica napus HOM05D000537 ORTHO05D006871 9.3e-55 217.6 227 60.4
AL2G40620 Arabidopsis lyrata HOM05D005609 ORTHO05D006871 1.2e-54 217.2 215 61.4
BcaC08g45338 Brassica carinata HOM05D005609 ORTHO05D006871 1.2e-54 217.2 235 59.6
A07p26850 Brassica napus HOM05D000537 ORTHO05D006871 1.2e-54 217.2 257 55.6
BraA07t30328Z Brassica rapa HOM05D005609 ORTHO05D006871 2.7e-54 216.1 236 59.3
Carub.0002s0078 Capsella rubella HOM05D005609 ORTHO05D006871 3.5e-54 215.7 234 57.7
BcaB02g07248 Brassica carinata HOM05D000537 ORTHO05D006871 2.3e-53 213.0 235 58.7
BolC6t38114H Brassica oleracea HOM05D005609 ORTHO05D006871 4.3e-52 208.8 243 56.0
Aa31LG4G1030 Aethionema arabicum HOM05D005609 ORTHO05D006871 1.1e-50 204.1 229 55.9
AT1G80770 Arabidopsis thaliana HOM05D005609 ORTHO05D006871 2.9e-48 196.1 199 59.8
THA.LOC104804469 Tarenaya hassleriana HOM05D005609 ORTHO05D006871 1.9e-47 193.4 217 54.4
Thecc.02G366200 Theobroma cacao HOM05D005609 ORTHO05D006871 1.3e-40 170.6 129 69.0
Manes.05G059500 Manihot esculenta HOM05D005609 ORTHO05D006871 1.9e-39 166.8 121 69.4
COL.COLO4_11253 Corchorus olitorius HOM05D005609 ORTHO05D006871 3.2e-39 166.0 128 69.5
Dinv43582 Davidia involucrata HOM05D005609 ORTHO05D006871 3.2e-39 166.0 153 60.8
TAR375G0879 Trochodendron aralioides HOM05D005609 ORTHO05D006871 3.2e-39 166.0 120 70.0
Hma1.2p1_0973F.1_g243010 Hydrangea macrophylla HOM05D005609 ORTHO05D006871 5.5e-39 165.2 153 59.5
Gohir.A09G169400 Gossypium hirsutum HOM05D005609 ORTHO05D006871 7.1e-39 164.9 129 66.7
Gohir.D09G165100 Gossypium hirsutum HOM05D005609 ORTHO05D006871 7.1e-39 164.9 129 66.7
Gorai.006G186900 Gossypium raimondii HOM05D005609 ORTHO05D006871 7.1e-39 164.9 129 66.7
Cpa.g.sc52.59 Carica papaya HOM05D005609 ORTHO05D006871 9.3e-39 164.5 121 66.9
Peaxi162Scf00103g01924 Petunia axillaris HOM05D005609 ORTHO05D006871 1.2e-38 164.1 121 68.6
CANSAT25G0413 Cannabis sativa HOM05D005609 ORTHO05D006871 2.1e-38 163.3 121 68.6
Cfa022162 Carpinus fangiana HOM05D005609 ORTHO05D006871 2.1e-38 163.3 129 66.7
CiPaw.14G015500 Carya illinoinensis HOM05D005609 ORTHO05D006871 2.1e-38 163.3 129 66.7
Lj9A548T58 Lonicera japonica HOM05D005609 ORTHO05D006871 2.7e-38 162.9 120 69.2
Prupe.2G114600 Prunus persica HOM05D005609 ORTHO05D006871 2.7e-38 162.9 121 68.6
CSS0041858 Camellia sinensis var. sinensis HOM05D005609 ORTHO05D006871 3.5e-38 162.5 121 66.9
Nn1g00634 Nelumbo nucifera HOM05D005609 ORTHO05D006871 4.6e-38 162.2 119 69.7
MSTRG.20658 Avicennia marina HOM05D005609 ORTHO05D006871 1.0e-37 161.0 121 66.1
Aqoxy3G02539 Aquilegia oxysepala HOM05D005609 ORTHO05D006871 1.8e-37 160.2 162 54.9
Actinidia05794 Actinidia chinensis HOM05D005609 ORTHO05D006871 2.3e-37 159.8 153 58.8
Migut.K00777 Erythranthe guttata HOM05D005609 ORTHO05D006871 3.0e-37 159.5 121 66.1
MD07G1087900 Malus domestica HOM05D005609 ORTHO05D006871 3.0e-37 159.5 121 66.1
Nitab4.5_0000204g0040 Nicotiana tabacum HOM05D005609 ORTHO05D006871 3.0e-37 159.5 120 65.8
GSVIVG01022468001 Vitis vinifera HOM05D005609 ORTHO05D006871 3.0e-37 159.5 121 66.1
Ciclev10020203m.g Citrus clementina HOM05D005609 ORTHO05D006871 3.9e-37 159.1 151 57.0
PSO017G2814 Papaver somniferum HOM05D005609 ORTHO05D006871 3.9e-37 159.1 120 65.0
Potri.002G134900 Populus trichocarpa HOM05D005609 ORTHO05D006871 3.9e-37 159.1 121 67.8
PGR142G0047 Punica granatum HOM05D005609 ORTHO05D006871 3.9e-37 159.1 172 51.7
Eucgr.E03531 Eucalyptus grandis HOM05D005609 ORTHO05D006871 6.7e-37 158.3 210 46.2
ATR0665G596 Amborella trichopoda HOM05D005609 ORTHO05D006871 8.7e-37 157.9 121 64.5
FvH4_7g08680 Fragaria vesca HOM05D005609 ORTHO05D006871 8.7e-37 157.9 121 66.9
FAN03G0926 Fragaria x ananassa HOM05D005609 ORTHO05D006871 8.7e-37 157.9 121 66.9
FAN06G0131 Fragaria x ananassa HOM05D005609 ORTHO05D006871 8.7e-37 157.9 121 66.9
Nitab4.5_0011341g0010 Nicotiana tabacum HOM05D005609 ORTHO05D006871 8.7e-37 157.9 120 65.0
Sopen09g033380 Solanum pennellii HOM05D005609 ORTHO05D006871 8.7e-37 157.9 121 65.3
Sc26g0001790 Simmondsia chinensis HOM05D005609 ORTHO05D006871 1.1e-36 157.5 121 66.9
TWI23G1015 Tripterygium wilfordii HOM05D005609 ORTHO05D006871 1.1e-36 157.5 121 66.9
Atru.chr5.35 Acer truncatum HOM05D005609 ORTHO05D006871 1.5e-36 157.1 182 50.5
Aqoxy3G02536 Aquilegia oxysepala HOM05D005609 ORTHO05D006871 1.5e-36 157.1 120 65.8
MD02G1225900 Malus domestica HOM05D005609 ORTHO05D006871 1.5e-36 157.1 121 64.5
Solyc09g090460.3 Solanum lycopersicum HOM05D005609 ORTHO05D006871 1.5e-36 157.1 121 64.5
PSO063G0967 Papaver somniferum HOM05D005609 ORTHO05D006871 1.9e-36 156.8 120 64.2
HanXRQChr02g0046691 Helianthus annuus HOM05D005609 ORTHO05D006871 2.5e-36 156.4 121 65.3
CAN.G221.2 Capsicum annuum HOM05D005609 ORTHO05D006871 3.3e-36 156.0 121 62.8
SGA_v2.0_scaffold45G17248 Striga asiatica HOM05D005609 ORTHO05D006871 4.3e-36 155.6 121 65.3
VMungo1080G1222 Vigna mungo HOM05D005609 ORTHO05D006871 5.6e-36 155.2 120 66.7
Glyma.08G340000 Glycine max HOM05D005609 ORTHO05D006871 1.6e-35 153.7 121 64.5
unitig_26.g8865 Utricularia gibba HOM05D005609 ORTHO05D006871 1.6e-35 153.7 153 56.2
Sed0001863 Sechium edule HOM05D005609 ORTHO05D006871 2.1e-35 153.3 121 64.5
Atru.chr5.65 Acer truncatum HOM05D005609 ORTHO05D006871 3.7e-35 152.5 121 61.2
Lsat_1_v5_gn_4_38680 Lactuca sativa HOM05D005609 ORTHO05D006871 3.7e-35 152.5 121 64.5
Phvul.008G139400 Phaseolus vulgaris HOM05D005609 ORTHO05D006871 3.7e-35 152.5 121 63.6
RcHm_v2.0_Chr1g0343911 Rosa chinensis HOM05D005609 ORTHO05D006871 3.7e-35 152.5 121 65.3
Ah.16g103320 Amaranthus hybridus HOM05D005609 ORTHO05D006871 8.1e-35 151.4 120 63.3
Haze_02915 Corylus avellana HOM05D005609 ORTHO05D006871 8.1e-35 151.4 142 60.6
ECA234G4049 Erigeron canadensis HOM05D005609 ORTHO05D006871 8.1e-35 151.4 121 62.0
Lalb_Chr03g0040871 Lupinus albus HOM05D005609 ORTHO05D006871 1.1e-34 151.0 121 62.8
arahy.Tifrunner.gnm1.ann1.R04L27 Arachis hypogaea HOM05D005609 ORTHO05D006871 1.4e-34 150.6 121 63.6
ClCG05G002820 Citrullus lanatus HOM05D005609 ORTHO05D006871 1.8e-34 150.2 121 63.6
Medtr7g450930 Medicago truncatula HOM05D005609 ORTHO05D006871 4.0e-34 149.1 120 64.2
Os08g0158900 Oryza sativa ssp. japonica HOM05D005609 ORTHO05D006871 1.5e-33 147.1 121 62.0
Psat3g155960 Pisum sativum HOM05D005609 ORTHO05D006871 1.5e-33 147.1 120 63.3
Lj1g0022406 Lotus japonicus HOM05D005609 ORTHO05D006871 2.6e-33 146.4 120 61.7
Ca_20451_v3 Cicer arietinum L. HOM05D005609 ORTHO05D006871 7.6e-33 144.8 120 62.5
MELO3C006259.2 Cucumis melo HOM05D005609 ORTHO05D006871 1.3e-32 144.1 158 53.2
CsaV3_3G010350 Cucumis sativus L. HOM05D005609 ORTHO05D006871 1.3e-32 144.1 151 53.6
TPR.G20612 Trifolium pratense HOM05D005609 ORTHO05D006871 1.3e-32 144.1 120 61.7
CDE02G3958 Ceratophyllum demersum HOM05D005609 ORTHO05D006871 1.7e-32 143.7 120 58.3
Zm00001eb415700 Zea mays HOM05D005609 ORTHO05D006871 3.8e-32 142.5 121 59.5
CDE11G0052 Ceratophyllum demersum HOM05D005609 ORTHO05D006871 8.4e-32 141.4 120 56.7
Pp3c1_10540 Physcomitrium patens HOM05D005609 ORTHO05D006871 1.2e-30 137.5 119 59.7
Mapoly0062s0042 Marchantia polymorpha HOM05D005609 ORTHO05D006871 2.7e-30 136.3 120 57.5
FAN10G3233 Fragaria x ananassa HOM05D005609 ORTHO05D006871 7.9e-30 134.8 121 60.3
FAN10G3950 Fragaria x ananassa HOM05D005609 ORTHO05D006871 7.9e-30 134.8 121 60.3
Rhsim07G0039900 Rhododendron simsii HOM05D005609 ORTHO05D006871 7.9e-30 134.8 156 50.0
Oeu021960.2 Olea europaea HOM05D005609 ORTHO05D006871 1.1e-28 131.0 157 48.4
Aqoxy7G01889 Aquilegia oxysepala HOM05D005609 ORTHO05D006871 2.5e-28 129.8 111 56.8
EL10Ac1g00709 Beta vulgaris HOM05D005609 ORTHO05D006871 4.3e-28 129.0 129 52.7
AagrBONN_evm.TU.Sc2ySwM_362.855 Anthoceros agrestis HOM05D005609 ORTHO05D006871 5.7e-28 128.6 119 53.8
Dinv44009 Davidia involucrata HOM05D005609 ORTHO05D006871 5.7e-28 128.6 98 64.3
vmacro13537 Vaccinium macrocarpon HOM05D005609 ORTHO05D006871 7.4e-28 128.3 183 42.6
arahy.Tifrunner.gnm1.ann1.HH0QF2 Arachis hypogaea HOM05D005609 ORTHO05D006871 2.0e-25 120.2 188 41.0
QL04p025874 Quercus lobata HOM05D005609 ORTHO05D006871 2.6e-25 119.8 213 38.0
SMO174G0003 Selaginella moellendorffii HOM05D005609 ORTHO05D006871 5.0e-24 115.5 121 49.6
PGSC0003DMG403017205 Solanum tuberosum HOM05D005609 ORTHO05D006871 5.0e-24 115.5 83 71.1
DCAR_029525 Daucus carota HOM05D005609 ORTHO05D006871 3.2e-23 112.8 83 68.7
HPP92_008983 Vanilla planifolia HOM05D005609 ORTHO05D006871 4.6e-22 109.0 102 53.9
HPP92_027052 Vanilla planifolia HOM05D005609 ORTHO05D006871 4.6e-22 109.0 113 54.0
CBR_g3918 Chara braunii HOM05D005609 ORTHO05D006871 7.9e-22 108.2 120 47.5
SMO174G0269 Selaginella moellendorffii HOM05D005609 ORTHO05D006871 1.5e-20 104.0 121 47.9
Duzib268G1371 Durio zibethinus HOM05D005609 ORTHO05D006871 7.4e-20 101.7 104 56.7
Cpa.g.c39652 Carica papaya HOM05D005609 ORTHO05D006871 1.8e-18 97.1 72 69.4
Hund17127 Selenicereus undatus HOM05D005609 ORTHO05D006871 6.5e-16 88.6 102 47.1
AUR62013794 Chenopodium quinoa HOM05D005609 ORTHO05D006871 7.9e-14 81.6 121 43.8
MCO05G391 Micromonas commoda HOM05D005609 ORTHO05D006871 9.7e-12 74.7 115 35.7
PRCOL_00000081 Prasinoderma coloniale HOM05D005609 ORTHO05D006871 1.4e-10 70.9 115 35.7
Cre08.g384355 Chlamydomonas reinhardtii HOM05D005609 ORTHO05D006871 1.6e-06 57.4 55 49.1


User provided reference genes

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