Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03977 Brassica carinata HOM05D000125 ORTHO05D039449 3.3e-191 671.4 310 100.0
C03p46580 Brassica napus HOM05D000125 ORTHO05D000120 7.1e-109 397.9 564 43.3
A03p38400 Brassica napus HOM05D000125 ORTHO05D000120 6.3e-105 384.8 624 39.3
BraA03t12990Z Brassica rapa HOM05D000125 ORTHO05D000120 1.3e-81 307.4 633 34.6
BcaB04g18795 Brassica carinata HOM05D000125 ORTHO05D039449 4.2e-77 292.4 240 62.9
BolC3t16921H Brassica oleracea HOM05D000125 ORTHO05D000120 1.2e-74 284.3 372 46.5
A03p38370 Brassica napus HOM05D000125 ORTHO05D000120 1.0e-54 218.0 150 67.3
AT3G13760 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 6.6e-54 215.3 147 64.6
AT1G35610 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 3.5e-47 193.0 145 63.4
A01p39820 Brassica napus HOM05D000125 ORTHO05D000120 8.9e-43 178.3 147 58.5
BraA01t04021Z Brassica rapa HOM05D000125 ORTHO05D000120 8.9e-43 178.3 147 58.5
BcaB04g20979 Brassica carinata HOM05D000125 ORTHO05D000120 9.2e-40 168.3 145 54.5
CARHR085920 Cardamine hirsuta HOM05D000125 ORTHO05D000120 3.9e-22 109.8 230 31.3
BolC3t16678H Brassica oleracea HOM05D000125 ORTHO05D000120 5.6e-21 105.9 138 40.6
AT3G11385 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 1.6e-20 104.4 140 42.9
BcaB04g18588 Brassica carinata HOM05D000125 ORTHO05D000120 2.8e-20 103.6 226 29.6
Thhalv10022693m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 3.6e-20 103.2 189 38.1
AT3G59120 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 1.1e-19 101.7 255 29.4
AL3G22880 Arabidopsis lyrata HOM05D000125 ORTHO05D000120 1.4e-19 101.3 224 31.7
AT3G11390 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 5.8e-18 95.9 225 28.9
AT3G11402 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 1.7e-17 94.4 223 27.8
AT3G11370 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 1.1e-16 91.7 230 28.7
Thhalv10002351m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 1.1e-16 91.7 252 28.2
CARHR195160 Cardamine hirsuta HOM05D000125 ORTHO05D000120 1.9e-16 90.9 135 40.7
AT2G17590 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 3.2e-16 90.1 197 29.9
BcaB04g18586 Brassica carinata HOM05D000125 ORTHO05D000120 7.1e-16 89.0 94 45.7
Carub.0006s1615 Capsella rubella HOM05D000125 ORTHO05D000120 7.1e-16 89.0 188 30.3
CARHR107800 Cardamine hirsuta HOM05D000125 ORTHO05D000120 1.6e-15 87.8 207 29.0
CARHR107780 Cardamine hirsuta HOM05D000125 ORTHO05D000120 2.7e-15 87.0 231 29.0
AT5G17960 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 3.5e-15 86.7 190 33.2
Carub.0003s1069 Capsella rubella HOM05D000125 ORTHO05D000120 4.6e-15 86.3 223 28.7
CARHR087660 Cardamine hirsuta HOM05D000125 ORTHO05D000120 4.6e-15 86.3 220 29.1
AT2G17600 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 7.8e-15 85.5 206 31.6
Thhalv10015310m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 6.6e-14 82.4 139 37.4
C02p09510 Brassica napus HOM05D000005 ORTHO05D012291 8.7e-14 82.0 152 34.9
CARHR107790 Cardamine hirsuta HOM05D000125 ORTHO05D000120 8.7e-14 82.0 149 35.6
Thhalv10005834m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 1.9e-13 80.9 245 26.9
Carub.0003s3169 Capsella rubella HOM05D000125 ORTHO05D000120 5.6e-13 79.3 194 29.4
Thhalv10022238m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 7.3e-13 79.0 250 28.8
AL3G50570 Arabidopsis lyrata HOM05D000125 ORTHO05D017401 9.6e-13 78.6 93 46.2
AT3G59130 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 9.6e-13 78.6 189 28.6
BolC2t06859H Brassica oleracea HOM05D000125 ORTHO05D000120 2.1e-12 77.4 141 36.2
BraA05t20963Z Brassica rapa HOM05D000125 ORTHO05D000120 2.1e-12 77.4 188 30.9
A05p20530 Brassica napus HOM05D000125 ORTHO05D000120 3.6e-12 76.6 188 30.3
Thhalv10022611m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 8.1e-12 75.5 157 33.1
THA.LOC104800531 Tarenaya hassleriana HOM05D000125 ORTHO05D000120 8.1e-12 75.5 197 28.9
C05p34470 Brassica napus HOM05D000125 ORTHO05D000120 1.1e-11 75.1 188 29.3
Thhalv10023009m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 3.1e-11 73.6 67 50.7
Carub.0007s2885 Capsella rubella HOM05D000125 ORTHO05D000120 5.8e-10 69.3 206 25.7
A05p36440 Brassica napus HOM05D000125 ORTHO05D000120 9.9e-10 68.6 204 29.9
Thhalv10000829m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 1.3e-09 68.2 74 43.2
AT1G50190 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 2.2e-09 67.4 160 29.4
C02p47800 Brassica napus HOM05D000029 ORTHO05D021997 2.2e-09 67.4 219 28.8
Carub.0001s4422 Capsella rubella HOM05D000125 ORTHO05D000120 2.9e-09 67.0 142 28.2
A02p30280 Brassica napus HOM05D000125 ORTHO05D000120 3.8e-09 66.6 215 28.8
A03p19620 Brassica napus HOM05D000125 ORTHO05D000120 3.8e-09 66.6 174 29.9
BraA02t08043Z Brassica rapa HOM05D000125 ORTHO05D000120 3.8e-09 66.6 215 28.8
BraA05t22444Z Brassica rapa HOM05D000125 ORTHO05D000120 4.9e-09 66.2 204 29.4
AT5G42280 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 6.4e-09 65.9 207 23.7
Thhalv10012084m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 2.4e-08 63.9 224 25.9
AT1G55420 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 4.2e-08 63.2 201 23.9
Carub.0003s3168 Capsella rubella HOM05D000125 ORTHO05D000120 4.2e-08 63.2 141 30.5
BraA03t11215Z Brassica rapa HOM05D000125 ORTHO05D000120 7.1e-08 62.4 174 29.9
Carub.0001s3932 Capsella rubella HOM05D000125 ORTHO05D000120 9.3e-08 62.0 54 46.3
CARHR040270 Cardamine hirsuta HOM05D000125 ORTHO05D000120 9.3e-08 62.0 220 26.4
Thhalv10001211m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 9.3e-08 62.0 215 25.1
AL1G57810 Arabidopsis lyrata HOM05D000125 ORTHO05D000120 1.2e-07 61.6 223 25.1
AT1G55700 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 1.2e-07 61.6 187 27.3
Thhalv10000813m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 2.7e-07 60.5 168 28.6
C03p22880 Brassica napus HOM05D000125 ORTHO05D000120 6.0e-07 59.3 174 29.3
Thhalv10002432m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 6.0e-07 59.3 204 26.5
BcaC06g31062 Brassica carinata HOM05D000125 ORTHO05D000120 1.3e-06 58.2 187 24.6
AT1G55440 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 1.8e-06 57.8 83 37.3
AT2G23100 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 1.8e-06 57.8 59 42.4
AT1G55380 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 6.7e-06 55.8 74 41.9


User provided reference genes

Program Settings