Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03969 Brassica carinata HOM05D006233 ORTHO05D007247 1.2e-77 293.1 148 100.0
BolC3t16928H Brassica oleracea HOM05D006233 ORTHO05D007247 3.8e-76 288.1 148 99.3
A03p38490 Brassica napus HOM05D006233 ORTHO05D007247 5.5e-75 284.3 148 98.0
C03p46650 Brassica napus HOM05D006233 ORTHO05D007247 9.4e-75 283.5 148 98.0
BraA03t12999Z Brassica rapa HOM05D006233 ORTHO05D007247 2.3e-73 278.9 152 95.4
BraA03t13001Z Brassica rapa HOM05D006233 ORTHO05D007247 8.8e-73 276.9 149 96.6
BcaB04g18809 Brassica carinata HOM05D006233 ORTHO05D007247 5.3e-70 267.7 149 94.6
Thhalv10021711m.g Eutrema salsugineum HOM05D006233 ORTHO05D007247 6.1e-66 254.2 148 89.2
AL3G26050 Arabidopsis lyrata HOM05D006233 ORTHO05D007247 3.0e-65 251.9 149 89.9
BcaC05g29149 Brassica carinata HOM05D006233 ORTHO05D007247 8.8e-65 250.4 148 89.9
C05p53920 Brassica napus HOM05D006233 ORTHO05D007247 8.8e-65 250.4 148 89.9
BcaB06g25428 Brassica carinata HOM05D006233 ORTHO05D007247 1.5e-64 249.6 149 89.9
Carub.0003s1344 Capsella rubella HOM05D006233 ORTHO05D007247 1.5e-64 249.6 149 87.2
AT3G13882 Arabidopsis thaliana HOM05D006233 ORTHO05D007247 5.7e-64 247.7 149 87.9
Sp3g12110 Schrenkiella parvula HOM05D006233 ORTHO05D007247 8.2e-63 243.8 150 87.3
CARHR088680 Cardamine hirsuta HOM05D006233 ORTHO05D007247 2.0e-61 239.2 150 85.3
Aa31LG8G1060 Aethionema arabicum HOM05D006233 ORTHO05D007247 4.2e-59 231.5 148 83.1
A03p38520 Brassica napus HOM05D006233 ORTHO05D007247 8.2e-55 217.2 124 90.3
THA.LOC104822640 Tarenaya hassleriana HOM05D006233 ORTHO05D007247 3.2e-51 205.3 169 66.3
BolC5t34058H Brassica oleracea HOM05D006233 ORTHO05D007247 4.8e-47 191.4 154 70.8
BraA05t22362Z Brassica rapa HOM05D006233 ORTHO05D007247 2.6e-40 169.1 179 59.8
Manes.11G024800 Manihot esculenta HOM05D006233 ORTHO05D007247 8.3e-39 164.1 149 63.1
Cpa.g.sc25.68 Carica papaya HOM05D006233 ORTHO05D007247 1.1e-38 163.7 148 62.2
MD17G1173900 Malus domestica HOM05D006233 ORTHO05D007247 1.1e-38 163.7 149 63.8
Prupe.3G047000 Prunus persica HOM05D006233 ORTHO05D007247 1.1e-38 163.7 150 64.0
Ciclev10026736m.g Citrus clementina HOM05D006233 ORTHO05D007247 1.4e-38 163.3 151 63.6
RcHm_v2.0_Chr2g0143671 Rosa chinensis HOM05D006233 ORTHO05D007247 1.8e-38 162.9 150 62.7
Atru.chr1.3781 Acer truncatum HOM05D006233 ORTHO05D007247 7.0e-38 161.0 149 62.4
FvH4_6g33800 Fragaria vesca HOM05D006233 ORTHO05D007247 9.2e-38 160.6 150 62.0
FAN14G4045 Fragaria x ananassa HOM05D006233 ORTHO05D007247 9.2e-38 160.6 150 62.0
Manes.04G140700 Manihot esculenta HOM05D006233 ORTHO05D007247 2.0e-37 159.5 149 62.4
FAN09G3309 Fragaria x ananassa HOM05D006233 ORTHO05D007247 2.7e-37 159.1 150 61.3
Cfa003566 Carpinus fangiana HOM05D006233 ORTHO05D007247 4.5e-37 158.3 151 60.3
FAN05G2224 Fragaria x ananassa HOM05D006233 ORTHO05D007247 4.5e-37 158.3 152 62.5
COL.COLO4_38606 Corchorus olitorius HOM05D006233 ORTHO05D007247 1.3e-36 156.8 148 58.8
Thecc.06G113700 Theobroma cacao HOM05D006233 ORTHO05D007247 1.7e-36 156.4 152 58.6
CiPaw.02G138900 Carya illinoinensis HOM05D006233 ORTHO05D007247 2.9e-36 155.6 151 60.9
Actinidia26050 Actinidia chinensis HOM05D006233 ORTHO05D007247 3.8e-36 155.2 151 60.9
CANSAT56G1839 Cannabis sativa HOM05D006233 ORTHO05D007247 5.0e-36 154.8 150 58.7
Gohir.A06G191200 Gossypium hirsutum HOM05D006233 ORTHO05D007247 5.0e-36 154.8 150 62.0
Gohir.D06G199600 Gossypium hirsutum HOM05D006233 ORTHO05D007247 6.6e-36 154.5 154 61.7
Gorai.010G232600 Gossypium raimondii HOM05D006233 ORTHO05D007247 6.6e-36 154.5 154 62.3
MD09G1191200 Malus domestica HOM05D006233 ORTHO05D007247 6.6e-36 154.5 150 60.7
Actinidia39105 Actinidia chinensis HOM05D006233 ORTHO05D007247 8.6e-36 154.1 151 59.6
TWI63G1789 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 8.6e-36 154.1 148 60.1
TWI38G0279 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 1.1e-35 153.7 148 58.1
arahy.Tifrunner.gnm1.ann1.LDN3BT Arachis hypogaea HOM05D006233 ORTHO05D007247 1.9e-35 152.9 149 59.7
BcaC05g29150 Brassica carinata HOM05D006233 ORTHO05D007247 2.5e-35 152.5 148 65.5
PGR119G1625 Punica granatum HOM05D006233 ORTHO05D007247 3.3e-35 152.1 153 58.8
CiPaw.01G223500 Carya illinoinensis HOM05D006233 ORTHO05D007247 9.5e-35 150.6 151 58.3
Dinv04018 Davidia involucrata HOM05D006233 ORTHO05D007247 2.8e-34 149.1 148 57.4
Hma1.2p1_1128F.1_g259780 Hydrangea macrophylla HOM05D006233 ORTHO05D007247 3.6e-34 148.7 151 58.9
Potri.003G041100 Populus trichocarpa HOM05D006233 ORTHO05D007247 1.4e-33 146.7 148 57.4
Haze_15979 Corylus avellana HOM05D006233 ORTHO05D007247 3.0e-33 145.6 173 51.4
Lj5A43T71 Lonicera japonica HOM05D006233 ORTHO05D007247 4.0e-33 145.2 160 54.4
CsaV3_3G043640 Cucumis sativus L. HOM05D006233 ORTHO05D007247 1.2e-32 143.7 151 57.6
Medtr8g017420 Medicago truncatula HOM05D006233 ORTHO05D007247 3.4e-32 142.1 149 55.0
A05p35530 Brassica napus HOM05D006233 ORTHO05D007247 4.4e-32 141.7 101 78.2
Ca_23330_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 4.4e-32 141.7 151 57.6
AUR62038159 Chenopodium quinoa HOM05D006233 ORTHO05D007247 9.8e-32 140.6 164 55.5
Eucgr.F03142 Eucalyptus grandis HOM05D006233 ORTHO05D007247 9.8e-32 140.6 150 54.0
MELO3C013069.2 Cucumis melo HOM05D006233 ORTHO05D007247 1.7e-31 139.8 151 57.0
SGA_v2.0_scaffold4G02044 Striga asiatica HOM05D006233 ORTHO05D007247 2.2e-31 139.4 151 56.3
Dinv37902 Davidia involucrata HOM05D006233 ORTHO05D007247 3.7e-31 138.7 148 58.1
Phvul.010G137600 Phaseolus vulgaris HOM05D006233 ORTHO05D007247 3.7e-31 138.7 150 58.0
AUR62009846 Chenopodium quinoa HOM05D006233 ORTHO05D007247 1.1e-30 137.1 160 53.8
Nn6g35511 Nelumbo nucifera HOM05D006233 ORTHO05D007247 1.9e-30 136.3 147 53.7
HanXRQChr10g0312401 Helianthus annuus HOM05D006233 ORTHO05D007247 3.2e-30 135.6 155 54.8
Migut.D00962 Erythranthe guttata HOM05D006233 ORTHO05D007247 4.1e-30 135.2 160 51.2
Aqoxy7G01184 Aquilegia oxysepala HOM05D006233 ORTHO05D007247 9.2e-30 134.0 148 50.0
Sed0001061 Sechium edule HOM05D006233 ORTHO05D007247 1.6e-29 133.3 150 54.7
VMungo0331G0931 Vigna mungo HOM05D006233 ORTHO05D007247 1.6e-29 133.3 150 55.3
Hund20828 Selenicereus undatus HOM05D006233 ORTHO05D007247 2.7e-29 132.5 171 49.7
EL10Ac7g16362 Beta vulgaris HOM05D006233 ORTHO05D007247 4.6e-29 131.7 160 51.2
PSO210G5036 Papaver somniferum HOM05D006233 ORTHO05D007247 4.6e-29 131.7 151 52.3
MSTRG.9502 Avicennia marina HOM05D006233 ORTHO05D007247 7.8e-29 131.0 160 51.2
Lj5g0016703 Lotus japonicus HOM05D006233 ORTHO05D007247 7.8e-29 131.0 157 52.9
Solyc06g062760.3 Solanum lycopersicum HOM05D006233 ORTHO05D007247 7.8e-29 131.0 152 52.0
GSVIVG01016799001 Vitis vinifera HOM05D006233 ORTHO05D007247 7.8e-29 131.0 153 53.6
Sopen06g022210 Solanum pennellii HOM05D006233 ORTHO05D007247 1.0e-28 130.6 151 52.3
ClCG07G013950 Citrullus lanatus HOM05D006233 ORTHO05D007247 1.3e-28 130.2 143 55.9
PGSC0003DMG400004851 Solanum tuberosum HOM05D006233 ORTHO05D007247 2.3e-28 129.4 151 52.3
PSO210G1065 Papaver somniferum HOM05D006233 ORTHO05D007247 3.0e-28 129.0 150 49.3
TPR.G3185 Trifolium pratense HOM05D006233 ORTHO05D007247 3.9e-28 128.6 151 51.7
Nitab4.5_0000255g0250 Nicotiana tabacum HOM05D006233 ORTHO05D007247 6.6e-28 127.9 149 51.7
Nitab4.5_0005918g0010 Nicotiana tabacum HOM05D006233 ORTHO05D007247 6.6e-28 127.9 149 52.3
Cc04_g01780 Coffea canephora HOM05D006233 ORTHO05D007247 8.6e-28 127.5 149 54.4
Psat4g187760 Pisum sativum HOM05D006233 ORTHO05D007247 1.5e-27 126.7 142 53.5
CDE03G0127 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 3.3e-27 125.6 150 50.7
Glyma.07G008600 Glycine max HOM05D006233 ORTHO05D007247 4.3e-27 125.2 144 55.6
Peaxi162Scf00207g01343 Petunia axillaris HOM05D006233 ORTHO05D007247 1.2e-26 123.6 150 50.7
Glyma.08G191600 Glycine max HOM05D006233 ORTHO05D007247 2.8e-26 122.5 144 54.9
ECA234G2580 Erigeron canadensis HOM05D006233 ORTHO05D007247 1.4e-25 120.2 158 52.5
Duzib192G0098 Durio zibethinus HOM05D006233 ORTHO05D007247 2.3e-25 119.4 124 52.4
Lalb_Chr25g0280771 Lupinus albus HOM05D006233 ORTHO05D007247 2.3e-25 119.4 150 50.7
FAN21G3416 Fragaria x ananassa HOM05D006233 ORTHO05D007247 3.1e-25 119.0 128 55.5
Lj5A42T58 Lonicera japonica HOM05D006233 ORTHO05D007247 3.1e-25 119.0 91 69.2
arahy.Tifrunner.gnm1.ann1.9P6A99 Arachis hypogaea HOM05D006233 ORTHO05D007247 1.3e-23 113.6 125 52.8
Actinidia32155 Actinidia chinensis HOM05D006233 ORTHO05D007247 1.1e-22 110.5 150 48.7
HanXRQChr04g0094941 Helianthus annuus HOM05D006233 ORTHO05D007247 1.1e-22 110.5 149 53.0
MBI04_g36913_MAGBIO Magnolia biondii HOM05D006233 ORTHO05D007247 1.4e-22 110.2 154 46.8
Zm00001eb160070 Zea mays HOM05D006233 ORTHO05D007247 1.6e-21 106.7 149 46.3
Rhsim08G0234900 Rhododendron simsii HOM05D006233 ORTHO05D007247 2.1e-21 106.3 130 46.2
Os01g0571200 Oryza sativa ssp. japonica HOM05D006233 ORTHO05D007247 3.0e-20 102.4 164 43.3
ATR0789G010 Amborella trichopoda HOM05D006233 ORTHO05D007247 3.3e-19 99.0 74 66.2
SGA_v2.0_scaffold68G22913 Striga asiatica HOM05D006233 ORTHO05D007247 2.1e-18 96.3 126 48.4
FAN11G2894 Fragaria x ananassa HOM05D000283 ORTHO05D007247 2.8e-18 95.9 149 47.0
Lsat_1_v5_gn_5_135041 Lactuca sativa HOM05D006233 ORTHO05D007247 1.4e-17 93.6 123 48.0
unitig_8.g4463 Utricularia gibba HOM05D006233 ORTHO05D007247 2.0e-16 89.7 125 47.2
Nn8g38812 Nelumbo nucifera HOM05D006233 ORTHO05D007247 1.9e-14 83.2 137 40.1
CSS0050466 Camellia sinensis var. sinensis HOM05D006233 ORTHO05D007247 4.1e-14 82.0 102 49.0
Pp3c4_29560 Physcomitrium patens HOM05D006233 ORTHO05D007247 2.7e-13 79.3 87 49.4
QL05p010144 Quercus lobata HOM05D006233 ORTHO05D007247 3.0e-12 75.9 95 47.4
QL05p010226 Quercus lobata HOM05D006233 ORTHO05D007247 1.9e-11 73.2 94 46.8
CDE06G1672 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 2.5e-11 72.8 121 41.3
RcHm_v2.0_Chr5g0063721 Rosa chinensis HOM05D006233 ORTHO05D007247 3.3e-11 72.4 92 48.9
AagrBONN_evm.TU.Sc2ySwM_368.223 Anthoceros agrestis HOM05D003143 ORTHO05D003628 4.7e-10 68.6 52 63.5
Zm00001eb357240 Zea mays HOM05D006233 ORTHO05D007247 1.1e-09 67.4 128 35.9
Mapoly0016s0011 Marchantia polymorpha HOM05D006233 ORTHO05D007247 1.8e-09 66.6 58 56.9
HPP92_007656 Vanilla planifolia HOM05D006233 ORTHO05D007247 5.2e-09 65.1 131 37.4
CBR_g8600 Chara braunii HOM05D006233 ORTHO05D007247 2.6e-08 62.8 71 47.9
Nn1g01194 Nelumbo nucifera HOM05D006233 ORTHO05D007247 1.3e-07 60.5 46 67.4
vmacro18776 Vaccinium macrocarpon HOM05D006233 ORTHO05D007247 2.2e-07 59.7 93 40.9
Ca_29232_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 2.9e-07 59.3 42 69.0
MCO16G417 Micromonas commoda HOM05D003208 ORTHO05D004103 7.1e-06 54.7 63 47.6


User provided reference genes

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