Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03963 Brassica carinata HOM05D003702 ORTHO05D014526 4.7e-91 337.8 167 100.0
C08p39290 Brassica napus HOM05D003702 ORTHO05D014526 7.1e-79 297.4 148 99.3
BolC5t33656H Brassica oleracea HOM05D003702 ORTHO05D014526 1.6e-75 286.2 187 79.7
C05p31130 Brassica napus HOM05D003702 ORTHO05D014526 4.9e-72 274.6 182 78.6
C07p19070 Brassica napus HOM05D003702 ORTHO05D014526 1.5e-68 263.1 176 77.8
BolC4t27595H Brassica oleracea HOM05D003702 ORTHO05D014526 9.6e-68 260.4 129 99.2
BolC7t42416H Brassica oleracea HOM05D003702 ORTHO05D014526 9.6e-68 260.4 172 78.5
BolC3t21317H Brassica oleracea HOM05D003702 ORTHO05D014526 9.0e-66 253.8 129 97.7
BcaC07g40935 Brassica carinata HOM05D003702 ORTHO05D014526 7.4e-52 207.6 102 99.0
C04p61090 Brassica napus HOM05D038349 ORTHO05D014526 5.9e-25 118.2 53 98.1
AT1G15110 Arabidopsis thaliana HOM05D003702 ORTHO05D004653 3.8e-24 115.5 72 76.4
BcaB02g06576 Brassica carinata HOM05D003702 ORTHO05D004653 3.8e-24 115.5 72 76.4
BcaB03g14561 Brassica carinata HOM05D003702 ORTHO05D004653 3.8e-24 115.5 72 76.4
BcaC05g25442 Brassica carinata HOM05D003702 ORTHO05D004653 3.8e-24 115.5 72 76.4
BcaNung05515 Brassica carinata HOM05D003702 ORTHO05D004653 3.8e-24 115.5 72 76.4
A06p11110 Brassica napus HOM05D003702 ORTHO05D004653 3.8e-24 115.5 72 76.4
A09p61570 Brassica napus HOM05D003702 ORTHO05D004653 3.8e-24 115.5 72 76.4
C05p13230 Brassica napus HOM05D003702 ORTHO05D004653 3.8e-24 115.5 72 76.4
C08p45160 Brassica napus HOM05D003702 ORTHO05D004653 3.8e-24 115.5 72 76.4
BolC5t30060H Brassica oleracea HOM05D003702 ORTHO05D004653 3.8e-24 115.5 72 76.4
BolC8t52064H Brassica oleracea HOM05D003702 ORTHO05D004653 3.8e-24 115.5 72 76.4
BraA06t24290Z Brassica rapa HOM05D003702 ORTHO05D004653 3.8e-24 115.5 72 76.4
BraA09t41530Z Brassica rapa HOM05D003702 ORTHO05D004653 3.8e-24 115.5 72 76.4
AL1G27170 Arabidopsis lyrata HOM05D003702 ORTHO05D004653 5.0e-24 115.2 72 75.0
Carub.0001s1487 Capsella rubella HOM05D003702 ORTHO05D004653 5.0e-24 115.2 72 75.0
CARHR015630 Cardamine hirsuta HOM05D003702 ORTHO05D004653 5.0e-24 115.2 72 75.0
Thhalv10007726m.g Eutrema salsugineum HOM05D003702 ORTHO05D004653 5.0e-24 115.2 72 75.0
Sp1g13450 Schrenkiella parvula HOM05D003702 ORTHO05D004653 5.0e-24 115.2 72 75.0
PGR102G2387 Punica granatum HOM05D003702 ORTHO05D004653 3.2e-23 112.5 72 70.8
C03p89980 Brassica napus HOM05D038349 ORTHO05D014526 5.5e-23 111.7 53 94.3
ClCG05G022350 Citrullus lanatus HOM05D003702 ORTHO05D004653 5.5e-23 111.7 89 57.3
Dinv04909 Davidia involucrata HOM05D003702 ORTHO05D004653 7.2e-23 111.3 72 72.2
vmacro12220 Vaccinium macrocarpon HOM05D003702 ORTHO05D004653 7.2e-23 111.3 73 69.9
Nn4g24020 Nelumbo nucifera HOM05D003702 ORTHO05D004653 9.4e-23 110.9 72 72.2
Hund20721 Selenicereus undatus HOM05D003702 ORTHO05D004653 1.2e-22 110.5 72 70.8
Atru.chr11.329 Acer truncatum HOM05D003702 ORTHO05D004653 1.6e-22 110.2 86 64.0
Cfa015818 Carpinus fangiana HOM05D003702 ORTHO05D004653 1.6e-22 110.2 88 62.5
MD13G1033100 Malus domestica HOM05D003702 ORTHO05D004653 1.6e-22 110.2 72 70.8
Prupe.1G319700 Prunus persica HOM05D003702 ORTHO05D004653 1.6e-22 110.2 72 70.8
Rhsim09G0102000 Rhododendron simsii HOM05D003702 ORTHO05D004653 1.6e-22 110.2 72 70.8
THA.LOC104805051 Tarenaya hassleriana HOM05D003702 ORTHO05D004653 1.6e-22 110.2 72 69.4
CSS0038999 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 2.1e-22 109.8 72 69.4
CSS0044058 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 2.1e-22 109.8 72 69.4
MD16G1035000 Malus domestica HOM05D003702 ORTHO05D004653 2.1e-22 109.8 72 72.2
QL01p003075 Quercus lobata HOM05D003702 ORTHO05D004653 2.1e-22 109.8 72 70.8
CsaV3_5G028680 Cucumis sativus L. HOM05D003702 ORTHO05D004653 2.7e-22 109.4 72 68.1
Dinv16161 Davidia involucrata HOM05D003702 ORTHO05D004653 2.7e-22 109.4 72 72.2
Ah.05g167700 Amaranthus hybridus HOM05D003702 ORTHO05D004653 3.6e-22 109.0 72 68.1
CDE06G0787 Ceratophyllum demersum HOM05D003702 ORTHO05D004653 3.6e-22 109.0 71 70.4
AUR62002771 Chenopodium quinoa HOM05D003702 ORTHO05D004653 3.6e-22 109.0 72 69.4
Cc11_g09310 Coffea canephora HOM05D003702 ORTHO05D004653 3.6e-22 109.0 72 68.1
Sc04g0005900 Simmondsia chinensis HOM05D003702 ORTHO05D004653 3.6e-22 109.0 72 68.1
Sc14g0007250 Simmondsia chinensis HOM05D003702 ORTHO05D004653 3.6e-22 109.0 72 69.4
AUR62037259 Chenopodium quinoa HOM05D003702 ORTHO05D004653 4.7e-22 108.6 72 68.1
Nitab4.5_0000350g0060 Nicotiana tabacum HOM05D003702 ORTHO05D004653 4.7e-22 108.6 72 69.4
Nitab4.5_0003886g0040 Nicotiana tabacum HOM05D003702 ORTHO05D004653 4.7e-22 108.6 72 69.4
Peaxi162Scf00205g01127 Petunia axillaris HOM05D003702 ORTHO05D004653 4.7e-22 108.6 72 69.4
GSVIVG01008367001 Vitis vinifera HOM05D003702 ORTHO05D004653 4.7e-22 108.6 72 69.4
EL10Ac1g01504 Beta vulgaris HOM05D003702 ORTHO05D004653 6.1e-22 108.2 72 69.4
Ciclev10015341m.g Citrus clementina HOM05D003702 ORTHO05D004653 6.1e-22 108.2 70 71.4
COL.COLO4_38548 Corchorus olitorius HOM05D003702 ORTHO05D004653 6.1e-22 108.2 72 68.1
DCAR_030184 Daucus carota HOM05D003702 ORTHO05D004653 6.1e-22 108.2 72 68.1
Gohir.A09G005100 Gossypium hirsutum HOM05D003702 ORTHO05D004653 6.1e-22 108.2 72 69.4
Gohir.D09G004400 Gossypium hirsutum HOM05D003702 ORTHO05D004653 6.1e-22 108.2 72 69.4
Gorai.006G006000 Gossypium raimondii HOM05D003702 ORTHO05D004653 6.1e-22 108.2 72 69.4
Manes.14G109300 Manihot esculenta HOM05D003702 ORTHO05D004653 6.1e-22 108.2 72 69.4
Medtr1g109120 Medicago truncatula HOM05D003702 ORTHO05D004653 6.1e-22 108.2 98 52.0
SGA_v2.0_scaffold170G38819 Striga asiatica HOM05D003702 ORTHO05D004653 6.1e-22 108.2 72 73.6
Thecc.02G215000 Theobroma cacao HOM05D003702 ORTHO05D004653 6.1e-22 108.2 72 69.4
TAR371G0966 Trochodendron aralioides HOM05D003702 ORTHO05D004653 6.1e-22 108.2 72 69.4
GSVIVG01011808001 Vitis vinifera HOM05D003702 ORTHO05D004653 6.1e-22 108.2 72 69.4
Aqoxy5G03879 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 8.0e-22 107.8 72 69.4
Aqoxy6G00508 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 8.0e-22 107.8 72 69.4
MELO3C005332.2 Cucumis melo HOM05D003702 ORTHO05D004653 8.0e-22 107.8 72 68.1
FvH4_4g26430 Fragaria vesca HOM05D003702 ORTHO05D004653 8.0e-22 107.8 72 66.7
FAN07G0957 Fragaria x ananassa HOM05D003702 ORTHO05D004653 8.0e-22 107.8 72 66.7
FAN12G0213 Fragaria x ananassa HOM05D003702 ORTHO05D004653 8.0e-22 107.8 72 66.7
FAN12G3413 Fragaria x ananassa HOM05D003702 ORTHO05D004653 8.0e-22 107.8 72 66.7
FAN17G2320 Fragaria x ananassa HOM05D003702 ORTHO05D004653 8.0e-22 107.8 72 66.7
FAN22G0804 Fragaria x ananassa HOM05D003702 ORTHO05D004653 8.0e-22 107.8 72 66.7
RcHm_v2.0_Chr4g0434061 Rosa chinensis HOM05D003702 ORTHO05D004653 8.0e-22 107.8 72 66.7
vmacro10616 Vaccinium macrocarpon HOM05D003702 ORTHO05D004653 8.0e-22 107.8 72 68.1
ClCG01G006000 Citrullus lanatus HOM05D003702 ORTHO05D004653 1.0e-21 107.5 72 66.7
Eucgr.B02865 Eucalyptus grandis HOM05D003702 ORTHO05D004653 1.0e-21 107.5 72 66.7
HanXRQChr17g0553131 Helianthus annuus HOM05D003702 ORTHO05D004653 1.0e-21 107.5 72 66.7
Lsat_1_v5_gn_8_41841 Lactuca sativa HOM05D003702 ORTHO05D004653 1.0e-21 107.5 72 66.7
Lj6A750T93 Lonicera japonica HOM05D003702 ORTHO05D004653 1.0e-21 107.5 72 68.1
MBI10_g06746_MAGBIO Magnolia biondii HOM05D003702 ORTHO05D004653 1.0e-21 107.5 72 66.7
Potri.010G117500 Populus trichocarpa HOM05D003702 ORTHO05D004653 1.0e-21 107.5 72 68.1
Sabra10G0086900 Salix brachista HOM05D003702 ORTHO05D004653 1.0e-21 107.5 71 69.0
Sabra10G0088500 Salix brachista HOM05D003702 ORTHO05D004653 1.0e-21 107.5 71 69.0
Actinidia16697 Actinidia chinensis HOM05D003702 ORTHO05D004653 1.4e-21 107.1 72 70.8
ATR0691G123 Amborella trichopoda HOM05D003702 ORTHO05D004653 1.4e-21 107.1 72 68.1
CAN.G139.1 Capsicum annuum HOM05D003702 ORTHO05D004653 1.4e-21 107.1 72 66.7
Ca_30213_v3 Cicer arietinum L. HOM05D003702 ORTHO05D004653 1.4e-21 107.1 72 66.7
Haze_00678 Corylus avellana HOM05D003702 ORTHO05D004653 1.4e-21 107.1 88 61.4
Duzib268G1865 Durio zibethinus HOM05D003702 ORTHO05D004653 1.4e-21 107.1 72 68.1
ECA233G3005 Erigeron canadensis HOM05D003702 ORTHO05D004653 1.4e-21 107.1 72 66.7
Manes.06G063400 Manihot esculenta HOM05D003702 ORTHO05D004653 1.4e-21 107.1 72 66.7
Potri.008G126100 Populus trichocarpa HOM05D003702 ORTHO05D004653 1.4e-21 107.1 71 69.0
TPR.G4874 Trifolium pratense HOM05D003702 ORTHO05D004653 1.4e-21 107.1 72 66.7
CDE07G1100 Ceratophyllum demersum HOM05D003702 ORTHO05D004653 1.8e-21 106.7 71 69.0
ECA246G4421 Erigeron canadensis HOM05D003702 ORTHO05D004653 1.8e-21 106.7 72 69.4
Nitab4.5_0000881g0100 Nicotiana tabacum HOM05D003702 ORTHO05D004653 1.8e-21 106.7 72 65.3
PSO017G5274 Papaver somniferum HOM05D003702 ORTHO05D004653 1.8e-21 106.7 72 70.8
PSO478G4444 Papaver somniferum HOM05D003702 ORTHO05D004653 1.8e-21 106.7 72 70.8
CAN.G1489.18 Capsicum annuum HOM05D003702 ORTHO05D004653 2.3e-21 106.3 72 65.3
Lsat_1_v5_gn_3_56601 Lactuca sativa HOM05D003702 ORTHO05D004653 2.3e-21 106.3 72 66.7
Nitab4.5_0004597g0050 Nicotiana tabacum HOM05D003702 ORTHO05D004653 2.3e-21 106.3 72 63.9
TWI75G1265 Tripterygium wilfordii HOM05D003702 ORTHO05D004653 2.3e-21 106.3 72 66.7
CiPaw.05G244900 Carya illinoinensis HOM05D003702 ORTHO05D004653 3.0e-21 105.9 70 68.6
MELO3C012286.2 Cucumis melo HOM05D003702 ORTHO05D004653 3.0e-21 105.9 72 65.3
CsaV3_5G034740 Cucumis sativus L. HOM05D003702 ORTHO05D004653 3.0e-21 105.9 72 65.3
Lalb_Chr06g0165751 Lupinus albus HOM05D003702 ORTHO05D004653 3.0e-21 105.9 72 65.3
Sed0016261 Sechium edule HOM05D003702 ORTHO05D004653 3.0e-21 105.9 70 68.6
SGA_v2.0_scaffold14G06919 Striga asiatica HOM05D003702 ORTHO05D004653 3.0e-21 105.9 80 65.0
CiPaw.06G015200 Carya illinoinensis HOM05D003702 ORTHO05D004653 3.9e-21 105.5 73 64.4
Duzib248G1136 Durio zibethinus HOM05D003702 ORTHO05D004653 3.9e-21 105.5 72 68.1
Migut.E00388 Erythranthe guttata HOM05D003702 ORTHO05D004653 3.9e-21 105.5 72 69.4
Oeu031392.1 Olea europaea HOM05D003702 ORTHO05D004653 3.9e-21 105.5 72 68.1
Sed0022429 Sechium edule HOM05D003702 ORTHO05D004653 3.9e-21 105.5 72 66.7
Solyc04g007520.3 Solanum lycopersicum HOM05D003702 ORTHO05D004653 3.9e-21 105.5 72 66.7
Sopen04g002600 Solanum pennellii HOM05D003702 ORTHO05D004653 3.9e-21 105.5 72 66.7
MSTRG.2203 Avicennia marina HOM05D003702 ORTHO05D004653 5.2e-21 105.1 72 66.7
Lalb_Chr21g0308661 Lupinus albus HOM05D003702 ORTHO05D004653 5.2e-21 105.1 72 66.7
Psat6g222840 Pisum sativum HOM05D003702 ORTHO05D004653 5.2e-21 105.1 72 65.3
MSTRG.874 Avicennia marina HOM05D003702 ORTHO05D004653 8.8e-21 104.4 81 61.7
Migut.L01016 Erythranthe guttata HOM05D003702 ORTHO05D004653 8.8e-21 104.4 72 66.7
Glyma.10G268300 Glycine max HOM05D003702 ORTHO05D004653 8.8e-21 104.4 72 65.3
Glyma.20G122800 Glycine max HOM05D003702 ORTHO05D004653 8.8e-21 104.4 72 65.3
Phvul.007G034000 Phaseolus vulgaris HOM05D003702 ORTHO05D004653 8.8e-21 104.4 72 65.3
Sabra08G0095000 Salix brachista HOM05D003702 ORTHO05D004653 8.8e-21 104.4 71 66.2
VMungo0720G1815 Vigna mungo HOM05D003702 ORTHO05D004653 8.8e-21 104.4 72 65.3
arahy.Tifrunner.gnm1.ann1.8F881C Arachis hypogaea HOM05D003702 ORTHO05D004653 1.1e-20 104.0 72 65.3
arahy.Tifrunner.gnm1.ann1.A779NY Arachis hypogaea HOM05D003702 ORTHO05D004653 1.1e-20 104.0 72 65.3
MSTRG.7632 Avicennia marina HOM05D003702 ORTHO05D004653 1.1e-20 104.0 72 66.7
SalBow8G2252 Salvia bowleyana HOM05D003702 ORTHO05D004653 1.1e-20 104.0 72 65.3
Solyc05g008580.3 Solanum lycopersicum HOM05D003702 ORTHO05D004653 1.1e-20 104.0 72 66.7
Sopen05g004420 Solanum pennellii HOM05D003702 ORTHO05D004653 1.1e-20 104.0 72 66.7
PGSC0003DMG400030564 Solanum tuberosum HOM05D003702 ORTHO05D004653 1.1e-20 104.0 72 66.7
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 1.5e-20 103.6 63 73.0
Lj5g0010985 Lotus japonicus HOM05D003702 ORTHO05D004653 1.5e-20 103.6 72 63.9
Lalb_Chr02g0145651 Lupinus albus HOM05D003702 ORTHO05D004653 1.5e-20 103.6 72 66.7
Gohir.A12G141400 Gossypium hirsutum HOM05D003702 ORTHO05D004653 2.0e-20 103.2 72 66.7
Gohir.D12G146300 Gossypium hirsutum HOM05D003702 ORTHO05D004653 2.0e-20 103.2 72 66.7
Gorai.008G157600 Gossypium raimondii HOM05D003702 ORTHO05D004653 2.0e-20 103.2 72 66.7
SalBow8G5575 Salvia bowleyana HOM05D003702 ORTHO05D004653 2.0e-20 103.2 72 66.7
Zm00001eb125990 Zea mays HOM05D003702 ORTHO05D004653 2.6e-20 102.8 72 62.5
HanXRQChr14g0459241 Helianthus annuus HOM05D003702 ORTHO05D004653 3.3e-20 102.4 72 62.5
Peaxi162Scf00897g00114 Petunia axillaris HOM05D003702 ORTHO05D004653 3.3e-20 102.4 72 63.9
Oeu036128.1 Olea europaea HOM05D003702 ORTHO05D004653 5.7e-20 101.7 72 65.3
Sed0021449 Sechium edule HOM05D003702 ORTHO05D004653 7.4e-20 101.3 73 61.6
HPP92_008281 Vanilla planifolia HOM05D003702 ORTHO05D004653 1.7e-19 100.1 72 61.1
HPP92_026069 Vanilla planifolia HOM05D003702 ORTHO05D004653 1.7e-19 100.1 72 61.1
Zm00001eb334750 Zea mays HOM05D003702 ORTHO05D004653 6.3e-19 98.2 72 59.7
Zm00001eb295120 Zea mays HOM05D003702 ORTHO05D004653 8.2e-19 97.8 72 61.1
Zm00001eb343120 Zea mays HOM05D003702 ORTHO05D004653 8.2e-19 97.8 72 61.1
unitig_746.g26864 Utricularia gibba HOM05D003702 ORTHO05D004653 1.8e-18 96.7 72 62.5
Os05g0554400 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 5.3e-18 95.1 72 58.3
BcaC06g35173 Brassica carinata HOM05D005941 ORTHO05D007879 9.1e-18 94.4 80 58.8
Duzib251G0696 Durio zibethinus HOM05D003702 ORTHO05D004653 1.0e-16 90.9 59 69.5
Pp3c4_15740 Physcomitrium patens HOM05D003702 ORTHO05D004653 8.5e-16 87.8 96 49.0
SMO116G0260 Selaginella moellendorffii HOM05D003702 ORTHO05D004653 7.2e-15 84.7 72 56.9
HPP92_021847 Vanilla planifolia HOM05D003702 ORTHO05D004653 3.6e-14 82.4 69 55.1
Pp3c26_4170 Physcomitrium patens HOM05D003702 ORTHO05D004653 8.0e-14 81.3 86 46.5
AagrBONN_evm.TU.Sc2ySwM_117.3898 Anthoceros agrestis HOM05D003702 ORTHO05D004653 2.2e-11 73.2 72 48.6
BcaC02g07984 Brassica carinata HOM05D003702 ORTHO05D014526 2.8e-11 72.8 31 93.5
Mapoly0057s0110 Marchantia polymorpha HOM05D003702 ORTHO05D004653 1.1e-10 70.9 72 45.8
BcaB01g00253 Brassica carinata HOM05D038349 ORTHO05D092297 3.8e-08 62.4 56 62.5
BolC6t37169H Brassica oleracea HOM05D003702 ORTHO05D019976 2.5e-07 59.7 43 55.8
BcaC01g05019 Brassica carinata HOM05D019496 ORTHO05D019976 3.2e-07 59.3 39 61.5


User provided reference genes

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