Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03899 Brassica carinata HOM05D001511 ORTHO05D027646 2.9e-31 137.9 68 100.0
C03p47450 Brassica napus HOM05D001511 ORTHO05D027646 6.7e-28 126.7 64 98.4
A03p39140 Brassica napus HOM05D001511 ORTHO05D027646 1.5e-19 99.0 58 84.5
BraA03t13063Z Brassica rapa HOM05D001511 ORTHO05D027646 1.5e-19 99.0 58 84.5
Thhalv10021299m.g Eutrema salsugineum HOM05D001511 ORTHO05D009027 4.7e-13 77.4 42 83.3
BcaB06g29533 Brassica carinata HOM05D001511 ORTHO05D009027 8.0e-13 76.6 61 65.6
C05p52130 Brassica napus HOM05D000599 ORTHO05D006883 8.0e-13 76.6 61 65.6
BolC5t33898H Brassica oleracea HOM05D000599 ORTHO05D006883 8.0e-13 76.6 61 65.6
AL3G27430 Arabidopsis lyrata HOM05D001511 ORTHO05D009027 1.0e-12 76.3 46 78.3
Sp3g13280 Schrenkiella parvula HOM05D001511 ORTHO05D009027 1.0e-12 76.3 59 67.8
CARHR090040 Cardamine hirsuta HOM05D001511 ORTHO05D009027 1.4e-12 75.9 46 78.3
Aa31LG8G2290 Aethionema arabicum HOM05D001511 ORTHO05D009027 1.8e-12 75.5 46 76.1
A05p34360 Brassica napus HOM05D000599 ORTHO05D006883 2.3e-12 75.1 59 66.1
BraA05t22256Z Brassica rapa HOM05D000599 ORTHO05D006883 2.3e-12 75.1 59 66.1
Carub.0003s1472 Capsella rubella HOM05D001511 ORTHO05D009027 3.0e-12 74.7 45 77.8
AT3G15080 Arabidopsis thaliana HOM05D001511 ORTHO05D009027 1.5e-11 72.4 45 75.6
Manes.03G104200 Manihot esculenta HOM05D001511 ORTHO05D009027 9.8e-11 69.7 46 69.6
AUR62019505 Chenopodium quinoa HOM05D001511 ORTHO05D009027 4.8e-10 67.4 42 71.4
Cpa.g.sc80.90 Carica papaya HOM05D001511 ORTHO05D009027 6.3e-10 67.0 46 67.4
THA.LOC104810451 Tarenaya hassleriana HOM05D001511 ORTHO05D009027 8.3e-10 66.6 59 59.3
ClCG11G017730 Citrullus lanatus HOM05D001511 ORTHO05D009027 1.4e-09 65.9 44 63.6
EL10Ac4g08282 Beta vulgaris HOM05D001511 ORTHO05D009027 1.8e-09 65.5 39 74.4
Potri.001G373500 Populus trichocarpa HOM05D001511 ORTHO05D009027 2.4e-09 65.1 45 66.7
CSS0041260 Camellia sinensis var. sinensis HOM05D001511 ORTHO05D009027 3.1e-09 64.7 50 60.0
MELO3C025620.2 Cucumis melo HOM05D001511 ORTHO05D009027 3.1e-09 64.7 43 65.1
Duzib213G0763 Durio zibethinus HOM05D001511 ORTHO05D009027 4.1e-09 64.3 46 63.0
Sed0012127 Sechium edule HOM05D001511 ORTHO05D009027 4.1e-09 64.3 43 62.8
Haze_09372 Corylus avellana HOM05D001511 ORTHO05D009027 5.4e-09 63.9 46 63.0
QL08p023257 Quercus lobata HOM05D001511 ORTHO05D009027 7.0e-09 63.5 43 67.4
Rhsim04G0023400 Rhododendron simsii HOM05D001511 ORTHO05D009027 7.0e-09 63.5 50 58.0
SHI27559 Sapria himalayana HOM05D001511 ORTHO05D009027 7.0e-09 63.5 55 54.5
GSVIVG01014255001 Vitis vinifera HOM05D001511 ORTHO05D009027 7.0e-09 63.5 46 60.9
CsaV3_4G033350 Cucumis sativus L. HOM05D001511 ORTHO05D009027 9.1e-09 63.2 43 62.8
Atru.chr2.2376 Acer truncatum HOM05D001511 ORTHO05D009027 1.6e-08 62.4 60 51.7
Eucgr.F03289 Eucalyptus grandis HOM05D001511 ORTHO05D009027 1.6e-08 62.4 43 65.1
RcHm_v2.0_Chr5g0031901 Rosa chinensis HOM05D001511 ORTHO05D009027 1.6e-08 62.4 46 58.7
Sabra16G0245900 Salix brachista HOM05D001511 ORTHO05D009027 1.6e-08 62.4 45 64.4
FvH4_3g19101 Fragaria vesca HOM05D001511 ORTHO05D009027 2.0e-08 62.0 42 64.3
Prupe.4G172700 Prunus persica HOM05D001511 ORTHO05D009027 2.0e-08 62.0 45 60.0
TWI39G0540 Tripterygium wilfordii HOM05D001511 ORTHO05D009027 2.0e-08 62.0 49 57.1
arahy.Tifrunner.gnm1.ann1.K1U0CI Arachis hypogaea HOM05D001511 ORTHO05D009027 2.7e-08 61.6 39 69.2
Glyma.13G272800 Glycine max HOM05D001511 ORTHO05D009027 2.7e-08 61.6 50 54.0
Hma1.2p1_0416F.1_g148520 Hydrangea macrophylla HOM05D001511 ORTHO05D009027 2.7e-08 61.6 38 73.7
Actinidia35232 Actinidia chinensis HOM05D001511 ORTHO05D009027 3.5e-08 61.2 42 66.7
Gorai.013G172100 Gossypium raimondii HOM05D001511 ORTHO05D009027 3.5e-08 61.2 57 56.1
MD03G1236600 Malus domestica HOM05D001511 ORTHO05D009027 3.5e-08 61.2 44 63.6
Hund22760 Selenicereus undatus HOM05D001511 ORTHO05D009027 3.5e-08 61.2 42 64.3
MSTRG.14941 Avicennia marina HOM05D001511 ORTHO05D009027 4.5e-08 60.8 42 66.7
Migut.M00764 Erythranthe guttata HOM05D001511 ORTHO05D009027 4.5e-08 60.8 56 60.7
Gohir.A13G147600 Gossypium hirsutum HOM05D001511 ORTHO05D009027 4.5e-08 60.8 57 56.1
Nn1g06364 Nelumbo nucifera HOM05D001511 ORTHO05D009027 4.5e-08 60.8 43 65.1
arahy.Tifrunner.gnm1.ann1.JQB868 Arachis hypogaea HOM05D001511 ORTHO05D009027 5.9e-08 60.5 39 69.2
CANSAT56G0303 Cannabis sativa HOM05D001511 ORTHO05D009027 5.9e-08 60.5 38 65.8
CANSAT56G3783 Cannabis sativa HOM05D001511 ORTHO05D009027 5.9e-08 60.5 38 65.8
Sc15g0002630 Simmondsia chinensis HOM05D001511 ORTHO05D009027 5.9e-08 60.5 46 60.9
DCAR_019583 Daucus carota HOM05D001613 ORTHO05D001556 7.7e-08 60.1 39 69.2
ECA234G0134 Erigeron canadensis HOM05D001511 ORTHO05D009027 7.7e-08 60.1 42 64.3
Aqoxy1G02249 Aquilegia oxysepala HOM05D001511 ORTHO05D009027 1.0e-07 59.7 40 65.0
Lalb_Chr20g0109441 Lupinus albus HOM05D001511 ORTHO05D009027 1.0e-07 59.7 44 59.1
Phvul.005G068900 Phaseolus vulgaris HOM05D001511 ORTHO05D009027 1.0e-07 59.7 44 61.4
vmacro09512 Vaccinium macrocarpon HOM05D001511 ORTHO05D009027 1.0e-07 59.7 53 50.9
VMungo1080G0750 Vigna mungo HOM05D001511 ORTHO05D009027 1.0e-07 59.7 44 61.4
TAR487G0001 Trochodendron aralioides HOM05D001511 ORTHO05D009027 1.3e-07 59.3 43 60.5
Glyma.12G227500 Glycine max HOM05D001511 ORTHO05D009027 1.7e-07 58.9 44 59.1
Cc05_g11540 Coffea canephora HOM05D001511 ORTHO05D009027 2.3e-07 58.5 39 61.5
TPR.G29647 Trifolium pratense HOM05D001511 ORTHO05D009027 2.3e-07 58.5 43 62.8
Ciclev10008845m.g Citrus clementina HOM05D001511 ORTHO05D009027 2.9e-07 58.2 56 53.6
Dinv20219 Davidia involucrata HOM05D001511 ORTHO05D009027 2.9e-07 58.2 42 61.9
Oeu035014.1 Olea europaea HOM05D001511 ORTHO05D009027 2.9e-07 58.2 39 64.1
Peaxi162Scf00000g02817 Petunia axillaris HOM05D001511 ORTHO05D009027 2.9e-07 58.2 42 59.5
HanXRQChr10g0302431 Helianthus annuus HOM05D001511 ORTHO05D009027 5.0e-07 57.4 42 61.9
Lsat_1_v5_gn_5_128740 Lactuca sativa HOM05D001511 ORTHO05D009027 5.0e-07 57.4 39 64.1
Nitab4.5_0000332g0210 Nicotiana tabacum HOM05D001511 ORTHO05D009027 5.0e-07 57.4 45 55.6
Nitab4.5_0005522g0010 Nicotiana tabacum HOM05D001511 ORTHO05D009027 5.0e-07 57.4 42 59.5
Psat5g241280 Pisum sativum HOM05D001511 ORTHO05D009027 5.0e-07 57.4 43 58.1
PGR031G1542 Punica granatum HOM05D001511 ORTHO05D009027 5.0e-07 57.4 43 62.8
Zm00001eb042610 Zea mays HOM05D001511 ORTHO05D009027 6.6e-07 57.0 46 60.9
Lj3g0024963 Lotus japonicus HOM05D001511 ORTHO05D009027 8.6e-07 56.6 44 61.4
unitig_62.g23044 Utricularia gibba HOM05D001511 ORTHO05D009027 8.6e-07 56.6 42 64.3
Lj8A153T44 Lonicera japonica HOM05D001511 ORTHO05D009027 5.5e-06 53.9 38 57.9
Solyc12g014060.2 Solanum lycopersicum HOM05D001511 ORTHO05D009027 7.2e-06 53.5 42 57.1
Sopen12g005830 Solanum pennellii HOM05D001511 ORTHO05D009027 7.2e-06 53.5 42 57.1
PGSC0003DMG400015373 Solanum tuberosum HOM05D001511 ORTHO05D009027 7.2e-06 53.5 42 57.1
CAN.G329.11 Capsicum annuum HOM05D001511 ORTHO05D009027 9.5e-06 53.1 43 55.8
PSO541G4455 Papaver somniferum HOM05D001511 ORTHO05D009027 9.5e-06 53.1 44 61.4
PSO675G8067 Papaver somniferum HOM05D001511 ORTHO05D009027 9.5e-06 53.1 44 61.4


User provided reference genes

Program Settings