Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03896 Brassica carinata HOM05D000070 ORTHO05D092814 6.0e-97 358.6 385 100.0
BcaC01g03897 Brassica carinata HOM05D000070 ORTHO05D006683 1.4e-53 214.5 375 76.3
C03p47510 Brassica napus HOM05D000070 ORTHO05D006683 4.9e-51 206.1 375 74.7
BolC3t17015H Brassica oleracea HOM05D000070 ORTHO05D006683 4.9e-51 206.1 375 74.7
A03p39160 Brassica napus HOM05D000070 ORTHO05D006683 8.5e-43 178.7 372 68.3
BraA03t13065Z Brassica rapa HOM05D000070 ORTHO05D006683 8.5e-43 178.7 372 68.3
Thhalv10019880m.g Eutrema salsugineum HOM05D000070 ORTHO05D006683 2.2e-30 137.5 356 62.4
Sp3g13330 Schrenkiella parvula HOM05D000070 ORTHO05D006683 4.5e-28 129.8 405 61.7
Carub.0003s1477 Capsella rubella HOM05D000070 ORTHO05D006683 5.0e-19 99.8 393 54.7
AL3G27480 Arabidopsis lyrata HOM05D000070 ORTHO05D006683 7.2e-18 95.9 420 47.4
CARHR090100 Cardamine hirsuta HOM05D000070 ORTHO05D006683 9.4e-18 95.5 380 57.6
AT3G15120 Arabidopsis thaliana HOM05D000070 ORTHO05D006683 1.3e-14 85.1 450 47.6
Aa31LG8G2340 Aethionema arabicum HOM05D000070 ORTHO05D006683 1.8e-13 81.3 59 78.0
Gohir.D01G047300 Gossypium hirsutum HOM05D000070 ORTHO05D006683 3.6e-09 67.0 62 61.3
Gorai.002G066800 Gossypium raimondii HOM05D000070 ORTHO05D006683 3.6e-09 67.0 62 61.3
THA.LOC104810458 Tarenaya hassleriana HOM05D000070 ORTHO05D006683 1.0e-08 65.5 64 67.2
Gohir.A01G060800 Gossypium hirsutum HOM05D000070 ORTHO05D006683 1.8e-08 64.7 62 58.1
Psat5g241520 Pisum sativum HOM05D000070 ORTHO05D006683 6.8e-08 62.8 57 63.2
arahy.Tifrunner.gnm1.ann1.48N9B9 Arachis hypogaea HOM05D000070 ORTHO05D006683 2.6e-07 60.8 54 61.1
Thecc.07G098900 Theobroma cacao HOM05D000070 ORTHO05D006683 3.4e-07 60.5 62 56.5
Cfa020618 Carpinus fangiana HOM05D000070 ORTHO05D006683 4.4e-07 60.1 57 59.6
Ciclev10007229m.g Citrus clementina HOM05D000070 ORTHO05D006683 4.4e-07 60.1 69 53.6
QL08p023642 Quercus lobata HOM05D000070 ORTHO05D006683 4.4e-07 60.1 59 55.9
CiPaw.11G166700 Carya illinoinensis HOM05D000070 ORTHO05D006683 5.7e-07 59.7 63 55.6
Glyma.13G273300 Glycine max HOM05D000070 ORTHO05D006683 9.8e-07 58.9 57 56.1
TWI38G2035 Tripterygium wilfordii HOM05D000070 ORTHO05D006683 9.8e-07 58.9 60 55.0
Duzib213G1081 Durio zibethinus HOM05D000070 ORTHO05D006683 1.3e-06 58.5 62 53.2
Ca_03533_v3 Cicer arietinum L. HOM05D000070 ORTHO05D006683 2.2e-06 57.8 57 57.9
Duzib170G1082 Durio zibethinus HOM05D000070 ORTHO05D006683 2.2e-06 57.8 62 53.2
Medtr2g078630 Medicago truncatula HOM05D000070 ORTHO05D006683 2.2e-06 57.8 63 60.3
TPR.G7945 Trifolium pratense HOM05D000070 ORTHO05D006683 2.2e-06 57.8 71 53.5
MELO3C019399.2 Cucumis melo HOM05D000070 ORTHO05D006683 2.8e-06 57.4 112 38.4
Gohir.A08G021408 Gossypium hirsutum HOM05D000070 ORTHO05D006683 4.8e-06 56.6 62 53.2
Potri.011G141400 Populus trichocarpa HOM05D000070 ORTHO05D006683 4.8e-06 56.6 65 53.8
Phvul.005G069600 Phaseolus vulgaris HOM05D000070 ORTHO05D006683 6.3e-06 56.2 57 54.4
Gohir.D08G032300 Gossypium hirsutum HOM05D000070 ORTHO05D006683 8.3e-06 55.8 62 53.2
Gorai.004G029700 Gossypium raimondii HOM05D000070 ORTHO05D006683 8.3e-06 55.8 62 53.2
Manes.15G090100 Manihot esculenta HOM05D000070 ORTHO05D006683 8.3e-06 55.8 65 53.8
VMungo1080G0328 Vigna mungo HOM05D000070 ORTHO05D006683 8.3e-06 55.8 57 54.4


User provided reference genes

Program Settings