Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03840 Brassica carinata HOM05D008709 ORTHO05D021804 2.0e-92 342.4 171 100.0
BcaB04g18875 Brassica carinata HOM05D008709 ORTHO05D021804 4.9e-75 284.6 171 83.6
C03p48060 Brassica napus HOM05D008709 ORTHO05D021804 1.3e-72 276.6 138 100.0
BolC3t17087H Brassica oleracea HOM05D008709 ORTHO05D021804 1.3e-72 276.6 138 100.0
BraA03t13116Z Brassica rapa HOM05D008709 ORTHO05D021804 2.5e-71 272.3 159 89.3
A03p39680 Brassica napus HOM05D008709 ORTHO05D021804 9.5e-71 270.4 159 88.7
BraA03t13112Z Brassica rapa HOM05D008709 ORTHO05D011440 3.6e-30 135.6 160 49.4
BcaB04g18874 Brassica carinata HOM05D008709 ORTHO05D011440 5.3e-29 131.7 149 50.3
A03p39650 Brassica napus HOM05D008709 ORTHO05D011440 4.5e-28 128.6 162 47.5
BolC3t17089H Brassica oleracea HOM05D008709 ORTHO05D011440 4.6e-25 118.6 163 44.8
BraA03t13118Z Brassica rapa HOM05D008709 ORTHO05D011440 1.1e-23 114.0 163 44.2
BcaC01g01470 Brassica carinata HOM05D008709 ORTHO05D011440 3.3e-23 112.5 168 41.7
BolC3t21545H Brassica oleracea HOM05D008709 ORTHO05D011440 2.1e-22 109.8 155 43.2
C03p92330 Brassica napus HOM05D008709 ORTHO05D011440 2.8e-22 109.4 155 43.2
C03p48130 Brassica napus HOM05D008709 ORTHO05D011440 8.1e-22 107.8 161 41.0
BolC3t17093H Brassica oleracea HOM05D008709 ORTHO05D011440 8.1e-22 107.8 161 41.0
BolC3t17085H Brassica oleracea HOM05D008709 ORTHO05D011440 3.1e-21 105.9 131 43.5
AT2G16005 Arabidopsis thaliana HOM05D008709 ORTHO05D011440 4.0e-21 105.5 166 44.0
BcaC01g03838 Brassica carinata HOM05D008709 ORTHO05D011440 6.9e-21 104.8 125 48.0
C03p48080 Brassica napus HOM05D008709 ORTHO05D011440 6.9e-21 104.8 125 48.0
BcaB04g18887 Brassica carinata HOM05D008709 ORTHO05D011440 2.0e-20 103.2 171 40.9
CARHR091170 Cardamine hirsuta HOM05D008709 ORTHO05D011440 5.8e-20 101.7 153 46.4
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 1.0e-19 100.9 126 46.0
BcaC01g03841 Brassica carinata HOM05D008709 ORTHO05D011440 4.9e-19 98.6 135 41.5
BraA03t13114Z Brassica rapa HOM05D008709 ORTHO05D011440 1.9e-18 96.7 160 39.4
BcaB04g18876 Brassica carinata HOM05D008709 ORTHO05D011440 4.2e-18 95.5 124 48.4
CARHR091160 Cardamine hirsuta HOM05D008709 ORTHO05D011440 6.0e-17 91.7 153 41.8
BcaC01g03839 Brassica carinata HOM05D008709 ORTHO05D011440 3.0e-16 89.4 124 48.4
A03p39670 Brassica napus HOM05D008709 ORTHO05D011440 5.8e-12 75.1 113 39.8
BraA03t13117Z Brassica rapa HOM05D008709 ORTHO05D011440 3.8e-11 72.4 80 52.5
CARHR091180 Cardamine hirsuta HOM05D008709 ORTHO05D011440 3.8e-11 72.4 157 38.2
A03p39690 Brassica napus HOM05D008709 ORTHO05D011440 5.0e-11 72.0 80 52.5
C03p48140 Brassica napus HOM05D008709 ORTHO05D011440 1.1e-10 70.9 82 54.9
BraA09t38151Z Brassica rapa HOM05D014281 ORTHO05D027372 1.1e-10 70.9 115 40.9
CARHR102450 Cardamine hirsuta HOM05D008709 ORTHO05D011440 1.1e-10 70.9 69 58.0
Thhalv10009560m.g Eutrema salsugineum HOM05D008709 ORTHO05D011440 5.5e-10 68.6 130 36.2
A08p19780 Brassica napus HOM05D014281 ORTHO05D040471 2.1e-09 66.6 172 33.7
Thhalv10010794m.g Eutrema salsugineum HOM05D002139 ORTHO05D002264 1.0e-08 64.3 153 34.0
BolC3t17088H Brassica oleracea HOM05D008709 ORTHO05D011440 1.8e-08 63.5 80 50.0
BcaC06g31532 Brassica carinata HOM05D023624 ORTHO05D032369 2.3e-08 63.2 144 34.7
C01p25000 Brassica napus HOM05D014281 ORTHO05D027372 2.3e-08 63.2 157 34.4
BolC1t02444H Brassica oleracea HOM05D014281 ORTHO05D027372 2.3e-08 63.2 157 34.4
CARHR091150 Cardamine hirsuta HOM05D008709 ORTHO05D011440 3.0e-08 62.8 141 35.5
Carub.0004s0766 Capsella rubella HOM05D009123 ORTHO05D011699 3.9e-08 62.4 158 34.2
AT2G26370 Arabidopsis thaliana HOM05D009123 ORTHO05D038737 6.7e-08 61.6 128 40.6
A07p18490 Brassica napus HOM05D009123 ORTHO05D011699 1.5e-07 60.5 140 37.1
C03p48070 Brassica napus HOM05D008709 ORTHO05D011440 1.5e-07 60.5 65 53.8
BolC9t54845H Brassica oleracea HOM05D024654 ORTHO05D028072 1.5e-07 60.5 119 31.9
BraA07t29565Z Brassica rapa HOM05D009123 ORTHO05D011699 1.5e-07 60.5 140 37.1
AL5G22100 Arabidopsis lyrata HOM05D002139 ORTHO05D002264 3.3e-07 59.3 154 36.4
AT5G23820 Arabidopsis thaliana HOM05D009123 ORTHO05D011699 3.3e-07 59.3 162 35.2
THA.LOC104810941 Tarenaya hassleriana HOM05D002139 ORTHO05D002264 5.7e-07 58.5 148 32.4
AL6G35100 Arabidopsis lyrata HOM05D009123 ORTHO05D011699 1.3e-06 57.4 159 34.0
Carub.0003s2749 Capsella rubella HOM05D009123 ORTHO05D038737 1.6e-06 57.0 165 35.8
BcaB04g18877 Brassica carinata HOM05D008709 ORTHO05D011440 6.3e-06 55.1 87 39.1
BcaC02g10927 Brassica carinata HOM05D009123 ORTHO05D011699 6.3e-06 55.1 99 40.4
C04p23580 Brassica napus HOM05D009123 ORTHO05D011699 6.3e-06 55.1 99 40.4


User provided reference genes

Program Settings