Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18916 Brassica carinata HOM05D006322 ORTHO05D007716 7.2e-127 457.2 225 100.0
BcaC01g03797 Brassica carinata HOM05D006322 ORTHO05D007716 7.2e-127 457.2 225 100.0
BolC3t17131H Brassica oleracea HOM05D006322 ORTHO05D007716 7.2e-127 457.2 225 100.0
C03p48530 Brassica napus HOM05D006322 ORTHO05D007716 1.8e-125 452.6 225 98.7
A03p40000 Brassica napus HOM05D006322 ORTHO05D007716 4.5e-121 438.0 222 95.9
BraA03t13148Z Brassica rapa HOM05D006322 ORTHO05D007716 5.0e-120 434.5 222 95.0
BcaB04g18918 Brassica carinata HOM05D006322 ORTHO05D007716 2.4e-114 415.6 225 93.3
Thhalv10021446m.g Eutrema salsugineum HOM05D006322 ORTHO05D007716 1.0e-112 410.2 223 89.2
CARHR092240 Cardamine hirsuta HOM05D006322 ORTHO05D007716 1.3e-112 409.8 225 88.0
AL3G29970 Arabidopsis lyrata HOM05D006322 ORTHO05D007716 1.6e-110 402.9 221 87.8
Carub.0003s1674 Capsella rubella HOM05D006322 ORTHO05D007716 2.3e-109 399.1 219 87.7
Sp3g15210 Schrenkiella parvula HOM05D006322 ORTHO05D007716 1.5e-108 396.4 217 88.0
AT3G16990 Arabidopsis thaliana HOM05D006322 ORTHO05D007716 3.7e-107 391.7 221 86.4
Aa31LG8G4030 Aethionema arabicum HOM05D006322 ORTHO05D007716 5.0e-104 381.3 225 81.3
Manes.03G203000 Manihot esculenta HOM05D006322 ORTHO05D007716 9.8e-84 313.9 222 66.7
BcaB04g18915 Brassica carinata HOM05D001503 ORTHO05D003820 3.2e-82 308.9 201 81.6
Haze_01283 Corylus avellana HOM05D006322 ORTHO05D007716 9.2e-82 307.4 221 66.1
COL.COLO4_34636 Corchorus olitorius HOM05D006322 ORTHO05D007716 1.2e-81 307.0 223 65.0
QL06p011774 Quercus lobata HOM05D006322 ORTHO05D007716 1.6e-81 306.6 221 65.6
TAR636G2967 Trochodendron aralioides HOM05D006322 ORTHO05D007716 1.6e-81 306.6 222 64.0
Cfa015332 Carpinus fangiana HOM05D006322 ORTHO05D007716 3.5e-81 305.4 221 65.6
Solyc11g007570.2 Solanum lycopersicum HOM05D006322 ORTHO05D007716 3.5e-81 305.4 223 63.7
Cpa.g.sc9.74 Carica papaya HOM05D006322 ORTHO05D007716 1.1e-79 300.4 220 63.6
Duzib052G0456 Durio zibethinus HOM05D006322 ORTHO05D007716 1.1e-79 300.4 219 64.4
Peaxi162Scf00244g00413 Petunia axillaris HOM05D006322 ORTHO05D007716 1.1e-79 300.4 223 63.7
Sopen11g003410 Solanum pennellii HOM05D006322 ORTHO05D007716 1.1e-79 300.4 223 62.8
Lj4g0019910 Lotus japonicus HOM05D006322 ORTHO05D007716 2.5e-79 299.3 223 63.7
Atru.chr4.3025 Acer truncatum HOM05D006322 ORTHO05D007716 3.3e-79 298.9 223 63.7
Hma1.2p1_0078F.1_g040000 Hydrangea macrophylla HOM05D006322 ORTHO05D007716 3.3e-79 298.9 212 65.6
Aqoxy2G02768 Aquilegia oxysepala HOM05D006322 ORTHO05D007716 9.5e-79 297.4 217 63.1
Thecc.04G298700 Theobroma cacao HOM05D006322 ORTHO05D007716 9.5e-79 297.4 223 64.1
Phvul.003G113400 Phaseolus vulgaris HOM05D006322 ORTHO05D007716 1.2e-78 297.0 220 62.3
PGSC0003DMG400027315 Solanum tuberosum HOM05D006322 ORTHO05D007716 1.2e-78 297.0 214 63.1
Potri.008G106600 Populus trichocarpa HOM05D006322 ORTHO05D007716 1.6e-78 296.6 223 61.9
Nitab4.5_0001807g0060 Nicotiana tabacum HOM05D006322 ORTHO05D007716 2.1e-78 296.2 214 63.6
CiPaw.01G139400 Carya illinoinensis HOM05D006322 ORTHO05D007716 6.2e-78 294.7 214 65.4
CANSAT78G1173 Cannabis sativa HOM05D006322 ORTHO05D007716 8.1e-78 294.3 222 62.2
VMungo1215G3118 Vigna mungo HOM05D006322 ORTHO05D007716 8.1e-78 294.3 221 61.1
Migut.N00046 Erythranthe guttata HOM05D006322 ORTHO05D007716 1.4e-77 293.5 222 60.4
Glyma.17G032700 Glycine max HOM05D006322 ORTHO05D007716 3.1e-77 292.4 220 61.4
Sabra08G0080400 Salix brachista HOM05D006322 ORTHO05D007716 4.0e-77 292.0 219 60.3
Lju470A16T21 Lonicera japonica HOM05D006322 ORTHO05D007716 6.8e-77 291.2 213 63.8
Nitab4.5_0002259g0050 Nicotiana tabacum HOM05D006322 ORTHO05D007716 6.8e-77 291.2 214 62.1
EL10Ac3g05469 Beta vulgaris HOM05D006322 ORTHO05D007716 8.9e-77 290.8 221 63.3
Eucgr.A00353 Eucalyptus grandis HOM05D006322 ORTHO05D007716 8.9e-77 290.8 219 61.6
THA.LOC104802603 Tarenaya hassleriana HOM05D006322 ORTHO05D007716 8.9e-77 290.8 175 78.9
Medtr4g121940 Medicago truncatula HOM05D006322 ORTHO05D007716 2.0e-76 289.7 220 60.9
Cc03_g00960 Coffea canephora HOM05D006322 ORTHO05D007716 2.6e-76 289.3 221 61.5
Oeu019970.1 Olea europaea HOM05D006322 ORTHO05D007716 2.6e-76 289.3 217 60.4
Actinidia40367 Actinidia chinensis HOM05D006322 ORTHO05D007716 5.8e-76 288.1 215 62.3
Ciclev10005751m.g Citrus clementina HOM05D006322 ORTHO05D007716 5.8e-76 288.1 231 61.9
arahy.Tifrunner.gnm1.ann1.WPA2XH Arachis hypogaea HOM05D006322 ORTHO05D007716 9.9e-76 287.3 221 61.1
MD16G1155500 Malus domestica HOM05D006322 ORTHO05D007716 1.3e-75 287.0 235 60.9
Prupe.1G119400 Prunus persica HOM05D006322 ORTHO05D007716 2.2e-75 286.2 226 61.9
Duzib151G0960 Durio zibethinus HOM05D006322 ORTHO05D007716 2.9e-75 285.8 220 62.7
MSTRG.24817 Avicennia marina HOM05D006322 ORTHO05D007716 4.9e-75 285.0 222 59.9
Gohir.D09G235800 Gossypium hirsutum HOM05D006322 ORTHO05D007716 4.9e-75 285.0 213 62.4
HanXRQChr13g0395571 Helianthus annuus HOM05D006322 ORTHO05D007716 4.9e-75 285.0 221 60.2
TWI09G0431 Tripterygium wilfordii HOM05D006322 ORTHO05D007716 4.9e-75 285.0 220 61.8
ECA233G0552 Erigeron canadensis HOM05D006322 ORTHO05D007716 6.4e-75 284.6 215 60.5
Gohir.A09G235000 Gossypium hirsutum HOM05D006322 ORTHO05D007716 8.4e-75 284.3 215 61.4
arahy.Tifrunner.gnm1.ann1.57P81C Arachis hypogaea HOM05D006322 ORTHO05D007716 1.1e-74 283.9 221 60.2
Gorai.006G258900 Gossypium raimondii HOM05D006322 ORTHO05D007716 1.4e-74 283.5 213 62.0
Sc25g0003310 Simmondsia chinensis HOM05D006322 ORTHO05D007716 1.9e-74 283.1 215 61.9
CSS0012053 Camellia sinensis var. sinensis HOM05D006322 ORTHO05D007716 2.4e-74 282.7 219 59.8
PSO357G0527 Papaver somniferum HOM05D006322 ORTHO05D007716 3.2e-74 282.3 216 61.1
SalBow5G5236 Salvia bowleyana HOM05D006322 ORTHO05D007716 4.1e-74 282.0 216 59.3
Nn3g21692 Nelumbo nucifera HOM05D006322 ORTHO05D007716 1.6e-73 280.0 215 61.4
GSVIVG01035010001 Vitis vinifera HOM05D006322 ORTHO05D007716 2.1e-73 279.6 203 65.0
Lsat_1_v5_gn_6_16821 Lactuca sativa HOM05D006322 ORTHO05D007716 2.7e-73 279.3 214 61.2
MBI19_g07237_MAGBIO Magnolia biondii HOM05D006322 ORTHO05D007716 2.7e-73 279.3 215 58.6
Lalb_Chr13g0298441 Lupinus albus HOM05D006322 ORTHO05D007716 3.5e-73 278.9 220 58.2
SGA_v2.0_scaffold119G32659 Striga asiatica HOM05D006322 ORTHO05D007716 4.6e-73 278.5 226 56.2
Dinv44297 Davidia involucrata HOM05D006322 ORTHO05D007716 6.0e-73 278.1 184 69.6
RcHm_v2.0_Chr4g0424801 Rosa chinensis HOM05D006322 ORTHO05D007716 6.0e-73 278.1 217 58.1
PSO170G6693 Papaver somniferum HOM05D006322 ORTHO05D007716 6.6e-72 274.6 215 59.5
FAN07G2163 Fragaria x ananassa HOM05D006322 ORTHO05D007716 1.1e-71 273.9 218 57.8
vmacro08057 Vaccinium macrocarpon HOM05D006322 ORTHO05D007716 3.3e-71 272.3 222 56.8
Ca_21447_v3 Cicer arietinum L. HOM05D006322 ORTHO05D007716 3.6e-70 268.9 223 59.6
HPP92_001241 Vanilla planifolia HOM05D006322 ORTHO05D007716 3.6e-70 268.9 216 58.3
Zm00001eb396140 Zea mays HOM05D006322 ORTHO05D007716 3.6e-70 268.9 218 56.0
PGR031G3552 Punica granatum HOM05D006322 ORTHO05D007716 4.7e-70 268.5 212 58.5
Psat4g024200 Pisum sativum HOM05D006322 ORTHO05D007716 1.1e-69 267.3 216 58.3
Rhsim04G0234900 Rhododendron simsii HOM05D006322 ORTHO05D007716 1.1e-69 267.3 217 58.5
ATR0796G257 Amborella trichopoda HOM05D006322 ORTHO05D007716 3.1e-69 265.8 220 55.5
DCAR_027007 Daucus carota HOM05D006322 ORTHO05D007716 3.1e-69 265.8 276 47.5
Hund11963 Selenicereus undatus HOM05D006322 ORTHO05D007716 2.6e-68 262.7 213 57.3
Psat4g024280 Pisum sativum HOM05D006322 ORTHO05D007716 2.9e-67 259.2 218 56.0
Os03g0306900 Oryza sativa ssp. japonica HOM05D006322 ORTHO05D007716 4.2e-66 255.4 208 54.8
MELO3C021273.2 Cucumis melo HOM05D006322 ORTHO05D007716 2.7e-65 252.7 211 57.3
ClCG06G004620 Citrullus lanatus HOM05D006322 ORTHO05D007716 2.3e-64 249.6 211 56.4
CsaV3_6G022370 Cucumis sativus L. HOM05D006322 ORTHO05D007716 6.6e-64 248.1 209 56.5
Sed0017771 Sechium edule HOM05D006322 ORTHO05D007716 8.7e-64 247.7 213 56.3
FAN12G2263 Fragaria x ananassa HOM05D006322 ORTHO05D007716 1.3e-62 243.8 211 55.0
CAN.G135.71 Capsicum annuum HOM05D006322 ORTHO05D007716 3.1e-61 239.2 175 62.9
SEGI_24166 Sequoiadendron giganteum HOM05D006322 ORTHO05D007716 2.0e-60 236.5 218 50.0
DCAR_030477 Daucus carota HOM05D006322 ORTHO05D007716 2.6e-60 236.1 217 52.5
SHI00180 Sapria himalayana HOM05D006322 ORTHO05D007716 8.4e-59 231.1 252 46.0
AUR62041396 Chenopodium quinoa HOM05D006322 ORTHO05D007716 1.0e-56 224.2 175 60.6
Ah.13g071980 Amaranthus hybridus HOM05D006322 ORTHO05D007716 1.1e-55 220.7 213 51.6
Peaxi162Scf00244g00510 Petunia axillaris HOM05D006322 ORTHO05D007716 1.3e-54 217.2 227 47.1
FvH4_4g19550 Fragaria vesca HOM05D006322 ORTHO05D007716 2.8e-54 216.1 181 57.5
AUR62016124 Chenopodium quinoa HOM05D006322 ORTHO05D007716 4.8e-54 215.3 174 59.8
Solyc11g007560.2 Solanum lycopersicum HOM05D006322 ORTHO05D007716 1.3e-51 207.2 223 46.2
Mapoly0003s0261 Marchantia polymorpha HOM05D006322 ORTHO05D007716 1.9e-50 203.4 218 40.4
TAR362G0340 Trochodendron aralioides HOM05D006322 ORTHO05D007716 7.1e-50 201.4 215 46.5
CAN.G135.72 Capsicum annuum HOM05D006322 ORTHO05D007716 2.7e-49 199.5 223 43.5
AagrBONN_evm.TU.Sc2ySwM_117.1930 Anthoceros agrestis HOM05D006322 ORTHO05D007716 4.6e-49 198.7 213 46.0
Actinidia27045 Actinidia chinensis HOM05D006322 ORTHO05D007716 7.9e-49 198.0 153 62.7
SMO116G0484 Selaginella moellendorffii HOM05D006322 ORTHO05D007716 3.0e-48 196.1 213 44.1
Nitab4.5_0001807g0070 Nicotiana tabacum HOM05D006322 ORTHO05D007716 1.3e-46 190.7 209 45.0
Pp3c10_15580 Physcomitrium patens HOM05D006322 ORTHO05D007716 1.3e-46 190.7 208 42.8
EL10Ac7g16563 Beta vulgaris HOM05D006322 ORTHO05D007716 7.6e-44 181.4 157 56.1
TPR.G20694 Trifolium pratense HOM05D006322 ORTHO05D007716 1.2e-41 174.1 159 50.9
Lalb_Chr20g0120881 Lupinus albus HOM05D006322 ORTHO05D007716 9.6e-39 164.5 136 56.6
Actinidia15599 Actinidia chinensis HOM05D006322 ORTHO05D007716 1.1e-34 151.0 113 61.9
PGSC0003DMG400040588 Solanum tuberosum HOM05D006322 ORTHO05D007716 1.9e-34 150.2 164 46.3
CBR_g45493 Chara braunii HOM05D006322 ORTHO05D007716 1.6e-30 137.1 220 31.8
BcaB04g18920 Brassica carinata HOM05D006322 ORTHO05D007716 9.0e-29 131.3 158 51.9
Atru.chr4.3023 Acer truncatum HOM05D006322 ORTHO05D007716 1.4e-26 124.0 82 68.3
Glyma.07G240701 Glycine max HOM05D006322 ORTHO05D007716 1.4e-24 117.5 112 52.7
Cre09.g407600 Chlamydomonas reinhardtii HOM05D006322 ORTHO05D007716 6.5e-19 98.6 221 29.0
EL10Ac9g22265 Beta vulgaris HOM05D006322 ORTHO05D007716 7.2e-18 95.1 96 47.9
CBR_g56708 Chara braunii HOM05D009436 ORTHO05D000048 1.6e-12 77.4 115 32.2
EL10Ac1g02106 Beta vulgaris HOM05D006322 ORTHO05D007716 2.6e-12 76.6 54 63.0
CANSAT54G0480 Cannabis sativa HOM05D006322 ORTHO05D007716 1.0e-11 74.7 95 43.2
Atru.chr4.2979 Acer truncatum HOM05D006322 ORTHO05D007716 1.6e-09 67.4 43 65.1
Lalb_Chr20g0120891 Lupinus albus HOM05D006322 ORTHO05D007716 2.8e-06 56.6 45 51.1


User provided reference genes

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