Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03770 Brassica carinata HOM05D006364 ORTHO05D007968 2.8e-45 184.9 92 100.0
BcaB04g18937 Brassica carinata HOM05D006364 ORTHO05D007968 1.8e-44 182.2 92 97.8
BcaB04g20848 Brassica carinata HOM05D006364 ORTHO05D007968 1.8e-44 182.2 92 97.8
A03p40140 Brassica napus HOM05D006364 ORTHO05D007968 1.8e-44 182.2 92 97.8
BraA03t13164Z Brassica rapa HOM05D006364 ORTHO05D007968 1.8e-44 182.2 92 97.8
BcaC01g03776 Brassica carinata HOM05D006364 ORTHO05D007968 2.4e-44 181.8 92 97.8
C03p48710 Brassica napus HOM05D006364 ORTHO05D007968 2.4e-44 181.8 92 97.8
C03p48760 Brassica napus HOM05D006364 ORTHO05D007968 2.4e-44 181.8 92 97.8
BolC3t17152H Brassica oleracea HOM05D006364 ORTHO05D007968 2.4e-44 181.8 92 97.8
Thhalv10021841m.g Eutrema salsugineum HOM05D006364 ORTHO05D007968 6.9e-44 180.3 92 96.7
Sp3g15490 Schrenkiella parvula HOM05D006364 ORTHO05D007968 6.9e-44 180.3 92 96.7
BcaC09g48691 Brassica carinata HOM05D006364 ORTHO05D007968 9.1e-44 179.9 92 96.7
C01p46890 Brassica napus HOM05D006364 ORTHO05D007968 9.1e-44 179.9 92 96.7
BolC1t04661H Brassica oleracea HOM05D006364 ORTHO05D007968 9.1e-44 179.9 92 96.7
A01p37010 Brassica napus HOM05D006364 ORTHO05D007968 1.1e-41 172.9 92 93.5
BraA01t03762Z Brassica rapa HOM05D006364 ORTHO05D007968 1.1e-41 172.9 92 93.5
AL3G30350 Arabidopsis lyrata HOM05D006364 ORTHO05D007968 1.9e-41 172.2 92 93.5
AT3G17300 Arabidopsis thaliana HOM05D006364 ORTHO05D007968 1.9e-41 172.2 92 93.5
Carub.0003s1701 Capsella rubella HOM05D006364 ORTHO05D007968 1.9e-41 172.2 92 93.5
Aa31LG8G4220 Aethionema arabicum HOM05D006364 ORTHO05D007968 5.5e-41 170.6 92 89.1
CARHR092600 Cardamine hirsuta HOM05D006364 ORTHO05D007968 5.2e-39 164.1 90 88.9
Peaxi162Scf00126g01328 Petunia axillaris HOM05D006364 ORTHO05D007968 1.7e-37 159.1 92 82.6
GSVIVG01017645001 Vitis vinifera HOM05D006364 ORTHO05D007968 4.8e-37 157.5 92 81.5
Dinv15615 Davidia involucrata HOM05D006364 ORTHO05D007968 1.1e-36 156.4 92 81.5
Nitab4.5_0000152g0370 Nicotiana tabacum HOM05D006364 ORTHO05D007968 1.1e-36 156.4 92 80.4
Nitab4.5_0003130g0060 Nicotiana tabacum HOM05D006364 ORTHO05D007968 1.1e-36 156.4 92 80.4
Solyc04g071180.3 Solanum lycopersicum HOM05D006364 ORTHO05D007968 1.4e-36 156.0 92 80.4
Sopen04g027130 Solanum pennellii HOM05D006364 ORTHO05D007968 1.4e-36 156.0 92 80.4
Nn3g21850 Nelumbo nucifera HOM05D006364 ORTHO05D007968 1.8e-36 155.6 92 81.5
Actinidia02518 Actinidia chinensis HOM05D006364 ORTHO05D007968 2.4e-36 155.2 92 79.3
Duzib212G0576 Durio zibethinus HOM05D006364 ORTHO05D007968 2.4e-36 155.2 92 81.5
EL10Ac1g00595 Beta vulgaris HOM05D006364 ORTHO05D007968 3.1e-36 154.8 89 80.9
Cc03_g00390 Coffea canephora HOM05D006364 ORTHO05D007968 4.1e-36 154.5 89 79.8
Gohir.A02G086100 Gossypium hirsutum HOM05D006364 ORTHO05D007968 9.1e-36 153.3 92 80.4
Gohir.D02G062300 Gossypium hirsutum HOM05D006364 ORTHO05D007968 9.1e-36 153.3 92 80.4
Gorai.005G070100 Gossypium raimondii HOM05D006364 ORTHO05D007968 9.1e-36 153.3 92 80.4
QL06p013601 Quercus lobata HOM05D006364 ORTHO05D007968 9.1e-36 153.3 89 79.8
COL.COLO4_34533 Corchorus olitorius HOM05D006364 ORTHO05D007968 1.6e-35 152.5 92 81.5
Prupe.1G110000 Prunus persica HOM05D006364 ORTHO05D007968 2.0e-35 152.1 88 81.8
PGSC0003DMG400008613 Solanum tuberosum HOM05D006364 ORTHO05D007968 2.6e-35 151.8 92 77.2
CSS0027206 Camellia sinensis var. sinensis HOM05D006364 ORTHO05D007968 3.5e-35 151.4 92 78.3
CDE11G0289 Ceratophyllum demersum HOM05D006364 ORTHO05D007968 3.5e-35 151.4 88 80.7
Rhsim02G0000900 Rhododendron simsii HOM05D006364 ORTHO05D007968 3.5e-35 151.4 92 77.2
THA.LOC104820323 Tarenaya hassleriana HOM05D006364 ORTHO05D007968 3.5e-35 151.4 92 78.3
Thecc.04G308800 Theobroma cacao HOM05D006364 ORTHO05D007968 3.5e-35 151.4 92 78.3
CAN.G175.13 Capsicum annuum HOM05D006364 ORTHO05D007968 4.5e-35 151.0 92 78.3
CAN.G689.14 Capsicum annuum HOM05D006364 ORTHO05D007968 4.5e-35 151.0 92 78.3
Cpa.g.sc146.52 Carica papaya HOM05D006364 ORTHO05D007968 4.5e-35 151.0 92 78.3
Haze_00814 Corylus avellana HOM05D006364 ORTHO05D007968 4.5e-35 151.0 92 79.3
Sed0012877 Sechium edule HOM05D006364 ORTHO05D007968 4.5e-35 151.0 92 78.3
CsaV3_3G015430 Cucumis sativus L. HOM05D006364 ORTHO05D007968 5.9e-35 150.6 92 76.1
Duzib151G1172 Durio zibethinus HOM05D006364 ORTHO05D007968 5.9e-35 150.6 86 82.6
MELO3C006742.2 Cucumis melo HOM05D006364 ORTHO05D007968 1.0e-34 149.8 92 75.0
Hma1.2p1_0013F.1_g008050 Hydrangea macrophylla HOM05D006364 ORTHO05D007968 1.3e-34 149.4 92 77.2
Hund19242 Selenicereus undatus HOM05D006364 ORTHO05D007968 1.7e-34 149.1 92 76.1
Potri.010G152100 Populus trichocarpa HOM05D006364 ORTHO05D007968 2.2e-34 148.7 92 76.1
MSTRG.26303 Avicennia marina HOM05D006364 ORTHO05D007968 2.9e-34 148.3 91 75.8
HPP92_017027 Vanilla planifolia HOM05D006364 ORTHO05D007968 2.9e-34 148.3 88 78.4
TPR.G30811 Trifolium pratense HOM05D006364 ORTHO05D007968 3.8e-34 147.9 89 78.7
Zm00001eb028690 Zea mays HOM05D006364 ORTHO05D007968 3.8e-34 147.9 88 78.4
Migut.B01021 Erythranthe guttata HOM05D006364 ORTHO05D007968 5.0e-34 147.5 91 74.7
Migut.N00017 Erythranthe guttata HOM05D006364 ORTHO05D007968 5.0e-34 147.5 91 74.7
MD16G1140400 Malus domestica HOM05D006364 ORTHO05D007968 5.0e-34 147.5 92 75.0
CSS0032087 Camellia sinensis var. sinensis HOM05D006364 ORTHO05D007968 6.5e-34 147.1 92 77.2
CANSAT78G0762 Cannabis sativa HOM05D006364 ORTHO05D007968 6.5e-34 147.1 92 75.0
FvH4_4g21000 Fragaria vesca HOM05D006364 ORTHO05D007968 6.5e-34 147.1 89 75.3
FAN12G1354 Fragaria x ananassa HOM05D000037 ORTHO05D001684 6.5e-34 147.1 89 75.3
Psat1g163400 Pisum sativum HOM05D006364 ORTHO05D007968 6.5e-34 147.1 89 77.5
RcHm_v2.0_Chr4g0426541 Rosa chinensis HOM05D006364 ORTHO05D007968 6.5e-34 147.1 89 75.3
Actinidia31587 Actinidia chinensis HOM05D006364 ORTHO05D007968 1.1e-33 146.4 92 75.0
TWI73G0896 Tripterygium wilfordii HOM05D006364 ORTHO05D007968 1.1e-33 146.4 92 76.1
CiPaw.01G113600 Carya illinoinensis HOM05D006364 ORTHO05D007968 1.5e-33 146.0 89 75.3
Eucgr.H04093 Eucalyptus grandis HOM05D006364 ORTHO05D007968 1.5e-33 146.0 92 73.9
Medtr2g032700 Medicago truncatula HOM05D006364 ORTHO05D007968 1.5e-33 146.0 89 74.2
HanXRQChr09g0252081 Helianthus annuus HOM05D006364 ORTHO05D007968 1.9e-33 145.6 88 77.3
Os12g0566100 Oryza sativa ssp. japonica HOM05D006364 ORTHO05D007968 1.9e-33 145.6 88 76.1
PGR004G1259 Punica granatum HOM05D006364 ORTHO05D007968 1.9e-33 145.6 92 73.9
unitig_22.g5765 Utricularia gibba HOM05D006364 ORTHO05D007968 1.9e-33 145.6 92 73.9
Zm00001eb418900 Zea mays HOM05D006364 ORTHO05D007968 1.9e-33 145.6 88 77.3
Glyma.15G136600 Glycine max HOM05D006364 ORTHO05D007968 4.2e-33 144.4 89 75.3
Potri.008G100400 Populus trichocarpa HOM05D006364 ORTHO05D007968 7.2e-33 143.7 86 76.7
Lj7E712T1 Lonicera japonica HOM05D006364 ORTHO05D007968 9.4e-33 143.3 86 76.7
ECA246G0645 Erigeron canadensis HOM05D006364 ORTHO05D007968 2.1e-32 142.1 88 73.9
Glyma.09G031500 Glycine max HOM05D006364 ORTHO05D007968 2.1e-32 142.1 89 74.2
Phvul.006G121400 Phaseolus vulgaris HOM05D006364 ORTHO05D007968 2.7e-32 141.7 89 73.0
arahy.Tifrunner.gnm1.ann1.28BCJ9 Arachis hypogaea HOM05D006364 ORTHO05D007968 3.6e-32 141.4 89 73.0
arahy.Tifrunner.gnm1.ann1.8W9CKH Arachis hypogaea HOM05D006364 ORTHO05D007968 3.6e-32 141.4 89 73.0
arahy.Tifrunner.gnm1.ann1.ZVI86Q Arachis hypogaea HOM05D006364 ORTHO05D007968 3.6e-32 141.4 89 73.0
AUR62034532 Chenopodium quinoa HOM05D000862 ORTHO05D000943 3.6e-32 141.4 84 78.6
DCAR_026961 Daucus carota HOM05D006364 ORTHO05D007968 3.6e-32 141.4 89 73.0
Aqoxy2G02602 Aquilegia oxysepala HOM05D006364 ORTHO05D007968 8.0e-32 140.2 92 73.9
AUR62014465 Chenopodium quinoa HOM05D000862 ORTHO05D000943 1.0e-31 139.8 84 77.4
Lalb_Chr18g0058441 Lupinus albus HOM05D006364 ORTHO05D007968 1.0e-31 139.8 89 73.0
Lj6g0013185 Lotus japonicus HOM05D006364 ORTHO05D007968 3.0e-31 138.3 89 71.9
Rhsim04G0245400 Rhododendron simsii HOM05D006364 ORTHO05D007968 2.2e-29 132.1 135 52.6
TWI09G0430 Tripterygium wilfordii HOM05D006364 ORTHO05D007968 2.2e-29 132.1 90 72.2
Lalb_Chr20g0120331 Lupinus albus HOM05D006364 ORTHO05D007968 3.7e-29 131.3 86 70.9
SHI21779 Sapria himalayana HOM05D006364 ORTHO05D007968 4.8e-29 131.0 82 75.6
PSO210G6302 Papaver somniferum HOM05D006364 ORTHO05D007968 3.1e-28 128.3 92 65.2
PSO761G0417 Papaver somniferum HOM05D006364 ORTHO05D007968 3.1e-28 128.3 92 65.2
AUR62036805 Chenopodium quinoa HOM05D000862 ORTHO05D000943 2.7e-27 125.2 120 55.8
Zm00001eb137950 Zea mays HOM05D006364 ORTHO05D007968 2.7e-27 125.2 119 54.6
ClCG05G006780 Citrullus lanatus HOM05D006364 ORTHO05D007968 1.3e-26 122.9 144 50.0
Manes.03G210000 Manihot esculenta HOM05D006364 ORTHO05D007968 4.2e-25 117.9 92 64.1
Ah.05g176740 Amaranthus hybridus HOM05D006364 ORTHO05D007968 2.1e-24 115.5 66 80.3
Dinv29542 Davidia involucrata HOM05D006364 ORTHO05D007968 2.1e-24 115.5 66 81.8
Sc07g0002970 Simmondsia chinensis HOM05D006364 ORTHO05D007968 2.7e-24 115.2 66 80.3
Lsat_1_v5_gn_6_117381 Lactuca sativa HOM05D006364 ORTHO05D007968 8.0e-24 113.6 84 64.3
MBI18_g09661_MAGBIO Magnolia biondii HOM05D006364 ORTHO05D007968 1.8e-23 112.5 118 54.2
Sed0013937 Sechium edule HOM05D006364 ORTHO05D007968 4.0e-23 111.3 66 77.3
Zm00001eb224320 Zea mays HOM05D006364 ORTHO05D007968 5.7e-22 107.5 65 76.9
SalBow4G1453 Salvia bowleyana HOM05D006364 ORTHO05D007968 9.8e-22 106.7 89 59.6
Zm00001eb193610 Zea mays HOM05D006364 ORTHO05D007968 2.7e-19 98.6 60 75.0
EL10Ac3g06351 Beta vulgaris HOM05D006364 ORTHO05D007968 2.2e-18 95.5 57 75.4
SalBow6G4934 Salvia bowleyana HOM05D006364 ORTHO05D007968 1.9e-17 92.4 94 53.2
Hund17201 Selenicereus undatus HOM05D000862 ORTHO05D000943 3.2e-17 91.7 89 55.1
BraA01t03642Z Brassica rapa HOM05D006364 ORTHO05D007968 4.2e-17 91.3 72 69.4
A01p35610 Brassica napus HOM05D006364 ORTHO05D007968 5.5e-17 90.9 72 68.1
SGA_v2.0_scaffold449G51796 Striga asiatica HOM05D006364 ORTHO05D007968 7.2e-17 90.5 94 53.2
Pp3c26_11720 Physcomitrium patens HOM05D006364 ORTHO05D007968 3.4e-14 81.6 83 43.4
AagrBONN_evm.TU.Sc2ySwM_368.2196 Anthoceros agrestis HOM05D006364 ORTHO05D007968 7.5e-14 80.5 83 43.4
SMO196G0146 Selaginella moellendorffii HOM05D006364 ORTHO05D007968 2.2e-13 79.0 71 47.9
vmacro07987 Vaccinium macrocarpon HOM05D006364 ORTHO05D007968 1.1e-12 76.6 107 43.9
Cfa015704 Carpinus fangiana HOM05D006364 ORTHO05D007968 5.4e-12 74.3 66 60.6
MD13G1146500 Malus domestica HOM05D006364 ORTHO05D007968 1.1e-09 66.6 56 58.9
Cre14.g626250 Chlamydomonas reinhardtii HOM05D006364 ORTHO05D007968 4.7e-08 61.2 67 41.8
SalBow3G2548 Salvia bowleyana HOM05D006364 ORTHO05D007968 4.7e-08 61.2 62 43.5
Actinidia07522 Actinidia chinensis HOM05D006364 ORTHO05D007968 6.1e-08 60.8 43 69.8
MCO05G593 Micromonas commoda HOM05D006364 ORTHO05D007968 1.0e-07 60.1 71 39.4


User provided reference genes

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