Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03740 Brassica carinata HOM05D004919 ORTHO05D005994 4.0e-96 354.8 177 100.0
Sp3g15820 Schrenkiella parvula HOM05D004919 ORTHO05D005994 1.4e-69 266.5 199 73.9
AL3G30800 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 1.1e-66 256.9 196 72.4
CARHR093030 Cardamine hirsuta HOM05D004919 ORTHO05D005994 1.6e-65 253.1 198 71.7
BcaB06g25821 Brassica carinata HOM05D004919 ORTHO05D005994 2.8e-65 252.3 195 71.8
AT3G17680 Arabidopsis thaliana HOM05D004919 ORTHO05D005994 3.6e-65 251.9 194 72.2
BraA05t22046Z Brassica rapa HOM05D004919 ORTHO05D005994 4.7e-65 251.5 192 71.9
Thhalv10021085m.g Eutrema salsugineum HOM05D004919 ORTHO05D005994 6.2e-65 251.1 198 70.7
C03p49080 Brassica napus HOM05D004919 ORTHO05D005994 3.1e-64 248.8 146 89.7
BolC3t17188H Brassica oleracea HOM05D004919 ORTHO05D005994 3.1e-64 248.8 146 89.7
BcaB06g25823 Brassica carinata HOM05D004919 ORTHO05D005994 4.0e-64 248.4 192 71.4
Carub.0003s1741 Capsella rubella HOM05D004919 ORTHO05D005994 3.4e-63 245.4 192 70.3
C05p48710 Brassica napus HOM05D004919 ORTHO05D005994 1.0e-59 233.8 176 72.7
BolC5t33607H Brassica oleracea HOM05D004919 ORTHO05D005994 1.0e-59 233.8 176 72.7
A05p32170 Brassica napus HOM05D004919 ORTHO05D005994 2.3e-59 232.6 176 72.7
Aa31LG8G4550 Aethionema arabicum HOM05D004919 ORTHO05D005994 4.4e-55 218.4 201 63.2
BcaB04g18959 Brassica carinata HOM05D004919 ORTHO05D005994 3.6e-41 172.2 131 74.8
AL1G55030 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 3.4e-39 165.6 182 53.8
Sp1g35340 Schrenkiella parvula HOM05D004919 ORTHO05D005994 4.9e-38 161.8 179 55.3
BcaB07g33762 Brassica carinata HOM05D004919 ORTHO05D005994 7.1e-37 157.9 178 54.5
Aa31LG10G5370 Aethionema arabicum HOM05D004919 ORTHO05D005994 1.6e-36 156.8 185 49.7
AT1G48405 Arabidopsis thaliana HOM05D004919 ORTHO05D005994 6.0e-36 154.8 182 51.1
Carub.0001s3752 Capsella rubella HOM05D004919 ORTHO05D005994 8.7e-35 151.0 174 52.3
CARHR038020 Cardamine hirsuta HOM05D004919 ORTHO05D005994 1.3e-33 147.1 175 53.1
AL1G55008 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 2.1e-33 146.4 176 51.7
A08p04740 Brassica napus HOM05D004919 ORTHO05D005994 1.1e-32 144.1 177 50.8
BraA08t32503Z Brassica rapa HOM05D004919 ORTHO05D005994 1.4e-32 143.7 177 50.3
BolC8t47321H Brassica oleracea HOM05D004919 ORTHO05D005994 1.2e-31 140.6 177 49.2
BcaC07g37137 Brassica carinata HOM05D004919 ORTHO05D005994 4.5e-31 138.7 177 48.6
C08p05110 Brassica napus HOM05D004919 ORTHO05D005994 4.5e-31 138.7 177 48.6
Thhalv10012064m.g Eutrema salsugineum HOM05D004919 ORTHO05D005994 7.6e-31 137.9 164 53.0
BraA06t23655Z Brassica rapa HOM05D004919 ORTHO05D005994 1.5e-23 113.6 178 43.3
A06p04510 Brassica napus HOM05D004919 ORTHO05D005994 1.4e-21 107.1 178 42.1
BcaB04g17432 Brassica carinata HOM05D004919 ORTHO05D005994 1.1e-18 97.4 89 64.0
C06p02850 Brassica napus HOM05D004919 ORTHO05D005994 4.5e-15 85.5 79 62.0
C06p02890 Brassica napus HOM05D004919 ORTHO05D005994 4.5e-15 85.5 79 62.0
C06p02940 Brassica napus HOM05D004919 ORTHO05D005994 4.5e-15 85.5 79 62.0
BcaB04g17430 Brassica carinata HOM05D004919 ORTHO05D005994 3.2e-13 79.3 79 59.5
Atru.chr9.355 Acer truncatum HOM05D004919 ORTHO05D005994 1.3e-11 73.9 165 33.9
CAN.G65.77 Capsicum annuum HOM05D004919 ORTHO05D005994 3.3e-10 69.3 86 44.2
Potri.015G030100 Populus trichocarpa HOM05D004919 ORTHO05D005994 5.7e-10 68.6 200 31.5
TWI60G1404 Tripterygium wilfordii HOM05D004919 ORTHO05D005994 7.4e-10 68.2 140 37.1
Aqoxy3G04241 Aquilegia oxysepala HOM05D004919 ORTHO05D005994 1.3e-09 67.4 116 39.7
RcHm_v2.0_Chr7g0177301 Rosa chinensis HOM05D004919 ORTHO05D005994 2.8e-09 66.2 132 32.6
Solyc03g098450.3 Solanum lycopersicum HOM05D004919 ORTHO05D005994 2.8e-09 66.2 156 32.1
Sopen03g029190 Solanum pennellii HOM05D004919 ORTHO05D005994 2.8e-09 66.2 156 32.1
Hma1.2p1_0983F.1_g244060 Hydrangea macrophylla HOM05D004919 ORTHO05D005994 4.8e-09 65.5 155 31.6
Hund22396 Selenicereus undatus HOM05D004919 ORTHO05D005994 6.3e-09 65.1 136 33.1
PGSC0003DMG400010158 Solanum tuberosum HOM05D004919 ORTHO05D005994 6.3e-09 65.1 162 32.1
PGSC0003DMG400027049 Solanum tuberosum HOM05D004919 ORTHO05D005994 8.2e-09 64.7 156 34.6
Haze_18425 Corylus avellana HOM05D004919 ORTHO05D005994 1.4e-08 63.9 196 28.6
Glyma.09G166300 Glycine max HOM05D004919 ORTHO05D005994 1.8e-08 63.5 195 28.7
Eucgr.K02309 Eucalyptus grandis HOM05D004919 ORTHO05D005994 2.4e-08 63.2 79 41.8
FAN04G2831 Fragaria x ananassa HOM05D004919 ORTHO05D005994 2.4e-08 63.2 159 27.7
Ciclev10020883m.g Citrus clementina HOM05D004919 ORTHO05D005994 4.1e-08 62.4 82 41.5
FAN13G3100 Fragaria x ananassa HOM05D004919 ORTHO05D005994 4.1e-08 62.4 132 30.3
FAN18G2684 Fragaria x ananassa HOM05D004919 ORTHO05D005994 4.1e-08 62.4 150 29.3
Sopen06g028660 Solanum pennellii HOM05D004919 ORTHO05D005994 4.1e-08 62.4 156 32.7
QL03p069496 Quercus lobata HOM05D004919 ORTHO05D005994 5.3e-08 62.0 162 27.8
FvH4_5g18280 Fragaria vesca HOM05D004919 ORTHO05D005994 6.9e-08 61.6 150 29.3
Potri.012G038000 Populus trichocarpa HOM05D004919 ORTHO05D005994 6.9e-08 61.6 203 30.0
Solyc06g072290.3 Solanum lycopersicum HOM05D004919 ORTHO05D005994 6.9e-08 61.6 140 33.6
EL10Ac8g19437 Beta vulgaris HOM05D004919 ORTHO05D005994 9.0e-08 61.2 78 39.7
Ca_00018_v3 Cicer arietinum L. HOM05D004919 ORTHO05D005994 9.0e-08 61.2 207 29.5
Lj2g0012075 Lotus japonicus HOM05D004919 ORTHO05D005994 9.0e-08 61.2 129 31.0
Nitab4.5_0002049g0020 Nicotiana tabacum HOM05D004919 ORTHO05D005994 9.0e-08 61.2 121 33.9
PSO063G6227 Papaver somniferum HOM05D004919 ORTHO05D005994 9.0e-08 61.2 134 34.3
FAN08G0951 Fragaria x ananassa HOM05D004919 ORTHO05D005994 1.2e-07 60.8 159 27.0
Phvul.004G141900 Phaseolus vulgaris HOM05D004919 ORTHO05D005994 1.2e-07 60.8 129 30.2
TWI81G0707 Tripterygium wilfordii HOM05D004919 ORTHO05D005994 1.2e-07 60.8 140 35.7
VMungo0464G0748 Vigna mungo HOM05D004919 ORTHO05D005994 1.5e-07 60.5 129 29.5
CANSAT01G3029 Cannabis sativa HOM05D004919 ORTHO05D005994 2.0e-07 60.1 132 31.1
CAN.G1909.1 Capsicum annuum HOM05D004919 ORTHO05D005994 2.0e-07 60.1 166 31.9
Cfa017790 Carpinus fangiana HOM05D004919 ORTHO05D005994 2.0e-07 60.1 200 27.0
DCAR_013999 Daucus carota HOM05D004919 ORTHO05D005994 2.0e-07 60.1 170 29.4
Sabra12G0026400 Salix brachista HOM05D004919 ORTHO05D005994 2.0e-07 60.1 92 40.2
Lalb_Chr22g0353861 Lupinus albus HOM05D004919 ORTHO05D005994 2.6e-07 59.7 124 31.5
PSO782G5234 Papaver somniferum HOM05D004919 ORTHO05D005994 2.6e-07 59.7 185 31.9
Manes.02G214000 Manihot esculenta HOM05D004919 ORTHO05D005994 4.5e-07 58.9 154 29.2
Prupe.5G242300 Prunus persica HOM05D004919 ORTHO05D005994 4.5e-07 58.9 79 38.0
MD06G1238400 Malus domestica HOM05D004919 ORTHO05D005994 5.9e-07 58.5 88 37.5
Peaxi162Scf00643g00061 Petunia axillaris HOM05D004919 ORTHO05D005994 5.9e-07 58.5 154 32.5
Psat1g120680 Pisum sativum HOM05D004919 ORTHO05D005994 7.7e-07 58.2 146 28.8
PGR044G0656 Punica granatum HOM05D004919 ORTHO05D005994 1.0e-06 57.8 78 37.2
arahy.Tifrunner.gnm1.ann1.C1QDUR Arachis hypogaea HOM05D004919 ORTHO05D005994 1.3e-06 57.4 148 27.7
CDE05G0351 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 1.3e-06 57.4 132 31.1
Dinv06632 Davidia involucrata HOM05D004919 ORTHO05D005994 1.3e-06 57.4 124 30.6
Glyma.16G216300 Glycine max HOM05D004919 ORTHO05D005994 1.3e-06 57.4 129 29.5
PGR083G2189 Punica granatum HOM05D004919 ORTHO05D005994 1.3e-06 57.4 151 26.5
Lalb_Chr24g0398491 Lupinus albus HOM05D004919 ORTHO05D005994 1.7e-06 57.0 129 30.2
arahy.Tifrunner.gnm1.ann1.03EXEF Arachis hypogaea HOM05D004919 ORTHO05D005994 2.2e-06 56.6 129 28.7
CiPaw.16G072100 Carya illinoinensis HOM05D004919 ORTHO05D005994 2.2e-06 56.6 144 29.2
Nn4g24904 Nelumbo nucifera HOM05D004919 ORTHO05D005994 2.2e-06 56.6 124 36.3
Sabra15G0025100 Salix brachista HOM05D004919 ORTHO05D005994 2.9e-06 56.2 91 38.5
MBI03_g05108_MAGBIO Magnolia biondii HOM05D004919 ORTHO05D005994 3.8e-06 55.8 134 34.3
Medtr6g081040 Medicago truncatula HOM05D004919 ORTHO05D005994 3.8e-06 55.8 79 39.2
Oeu061193.1 Olea europaea HOM05D004919 ORTHO05D005994 3.8e-06 55.8 141 27.7
arahy.Tifrunner.gnm1.ann1.SE8RA9 Arachis hypogaea HOM05D004919 ORTHO05D005994 5.0e-06 55.5 129 28.7
arahy.Tifrunner.gnm1.ann1.UCE8LX Arachis hypogaea HOM05D004919 ORTHO05D005994 5.0e-06 55.5 129 28.7
Oeu023547.1 Olea europaea HOM05D004919 ORTHO05D005994 6.5e-06 55.1 86 37.2
Cc00_g18770 Coffea canephora HOM05D004919 ORTHO05D005994 8.5e-06 54.7 154 29.2
Oeu038486.1 Olea europaea HOM05D004919 ORTHO05D005994 8.5e-06 54.7 161 31.1
SalBow8G2727 Salvia bowleyana HOM05D004919 ORTHO05D005994 8.5e-06 54.7 157 29.9
TPR.G24055 Trifolium pratense HOM05D004919 ORTHO05D005994 8.5e-06 54.7 79 38.0


User provided reference genes

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