Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03729 Brassica carinata HOM05D005872 ORTHO05D017612 1.0e-48 196.4 101 100.0
BcaC04g22283 Brassica carinata HOM05D005872 ORTHO05D017612 3.7e-46 188.0 98 95.9
C03p78990 Brassica napus HOM05D005872 ORTHO05D017612 1.2e-36 156.4 105 81.9
A07p00900 Brassica napus HOM05D005872 ORTHO05D017612 1.5e-31 139.4 106 72.6
C01p40880 Brassica napus HOM05D005872 ORTHO05D017612 1.5e-31 139.4 74 95.9
BolC1t04043H Brassica oleracea HOM05D005872 ORTHO05D017612 1.5e-31 139.4 74 95.9
BcaC01g03102 Brassica carinata HOM05D052258 ORTHO05D039292 2.1e-25 119.0 95 69.5
BolC3t17889H Brassica oleracea HOM05D052258 ORTHO05D039292 2.1e-25 119.0 95 69.5
A10p05890 Brassica napus HOM05D005872 ORTHO05D008133 3.1e-21 105.1 71 78.9
BraA10t42851Z Brassica rapa HOM05D005872 ORTHO05D008133 3.1e-21 105.1 71 78.9
Thhalv10008395m.g Eutrema salsugineum HOM05D005872 ORTHO05D008133 1.2e-20 103.2 70 74.3
Sp1g06070 Schrenkiella parvula HOM05D005872 ORTHO05D008133 1.2e-20 103.2 70 74.3
C05p05390 Brassica napus HOM05D005872 ORTHO05D008133 2.0e-20 102.4 71 77.5
BolC5t29311H Brassica oleracea HOM05D005872 ORTHO05D008133 2.0e-20 102.4 71 77.5
Carub.0001s0662 Capsella rubella HOM05D005872 ORTHO05D008133 4.5e-20 101.3 71 74.6
Aa31LG1G6580 Aethionema arabicum HOM05D005872 ORTHO05D008133 7.7e-20 100.5 70 70.0
AT1G07320 Arabidopsis thaliana HOM05D005872 ORTHO05D008133 1.0e-19 100.1 71 73.2
THA.LOC104808420 Tarenaya hassleriana HOM05D005872 ORTHO05D008133 1.0e-19 100.1 70 72.9
CARHR007030 Cardamine hirsuta HOM05D005872 ORTHO05D008133 1.7e-19 99.4 71 73.2
AL1G17470 Arabidopsis lyrata HOM05D005872 ORTHO05D008133 2.2e-19 99.0 71 71.8
Ciclev10028981m.g Citrus clementina HOM05D005872 ORTHO05D008133 5.0e-19 97.8 70 67.1
THA.LOC104826298 Tarenaya hassleriana HOM05D005872 ORTHO05D008133 6.5e-19 97.4 70 71.4
Atru.chr3.4076 Acer truncatum HOM05D005872 ORTHO05D008133 8.5e-19 97.1 70 67.1
Sc06g0008430 Simmondsia chinensis HOM05D005872 ORTHO05D008133 6.1e-17 90.9 70 64.3
Duzib168G1043 Durio zibethinus HOM05D005872 ORTHO05D008133 1.0e-16 90.1 70 64.3
Lsat_1_v5_gn_5_172301 Lactuca sativa HOM05D005872 ORTHO05D008133 5.1e-16 87.8 70 61.4
Rhsim01G0235400 Rhododendron simsii HOM05D005872 ORTHO05D008133 5.1e-16 87.8 70 62.9
Sabra06G0170900 Salix brachista HOM05D005872 ORTHO05D008133 5.1e-16 87.8 71 62.0
Nitab4.5_0000918g0030 Nicotiana tabacum HOM05D005872 ORTHO05D008133 6.7e-16 87.4 70 62.9
Cfa011659 Carpinus fangiana HOM05D005872 ORTHO05D008133 8.8e-16 87.0 70 62.9
Haze_24262 Corylus avellana HOM05D005872 ORTHO05D008133 8.8e-16 87.0 70 62.9
Glyma.03G110100 Glycine max HOM05D005872 ORTHO05D008133 1.1e-15 86.7 71 66.2
COL.COLO4_19111 Corchorus olitorius HOM05D005872 ORTHO05D008133 1.5e-15 86.3 70 61.4
Gohir.A08G002100 Gossypium hirsutum HOM05D005872 ORTHO05D008133 1.5e-15 86.3 70 61.4
Gohir.D08G012800 Gossypium hirsutum HOM05D005872 ORTHO05D008133 1.5e-15 86.3 70 61.4
Gorai.004G006900 Gossypium raimondii HOM05D005872 ORTHO05D008133 1.5e-15 86.3 70 61.4
HanXRQChr01g0011361 Helianthus annuus HOM05D005872 ORTHO05D008133 1.5e-15 86.3 72 61.1
Lj1A141T52 Lonicera japonica HOM05D005872 ORTHO05D008133 1.5e-15 86.3 70 60.0
Manes.01G164100 Manihot esculenta HOM05D005872 ORTHO05D008133 1.5e-15 86.3 70 62.9
Thecc.09G305200 Theobroma cacao HOM05D005872 ORTHO05D008133 1.5e-15 86.3 70 62.9
MELO3C025869.2 Cucumis melo HOM05D005872 ORTHO05D008133 2.0e-15 85.9 70 61.4
Dinv14463 Davidia involucrata HOM05D005872 ORTHO05D008133 2.0e-15 85.9 70 58.6
Glyma.07G114900 Glycine max HOM05D005872 ORTHO05D008133 2.0e-15 85.9 71 66.2
Potri.006G221100 Populus trichocarpa HOM05D005872 ORTHO05D008133 2.0e-15 85.9 71 60.6
ECA248G3182 Erigeron canadensis HOM05D005872 ORTHO05D008133 2.6e-15 85.5 70 57.1
VMungo0331G0535 Vigna mungo HOM05D005872 ORTHO05D008133 2.6e-15 85.5 71 64.8
CANSAT54G1024 Cannabis sativa HOM05D005872 ORTHO05D008133 4.4e-15 84.7 70 58.6
CAN.G375.78 Capsicum annuum HOM05D005872 ORTHO05D008133 4.4e-15 84.7 70 60.0
CAN.G375.79 Capsicum annuum HOM05D005872 ORTHO05D008133 4.4e-15 84.7 70 60.0
ClCG02G019690 Citrullus lanatus HOM05D005872 ORTHO05D008133 4.4e-15 84.7 70 60.0
CsaV3_6G016380 Cucumis sativus L. HOM05D005872 ORTHO05D008133 4.4e-15 84.7 70 60.0
Hund18857 Selenicereus undatus HOM05D005872 ORTHO05D008133 4.4e-15 84.7 69 58.0
HPP92_014295 Vanilla planifolia HOM05D005872 ORTHO05D008133 4.4e-15 84.7 71 60.6
Nitab4.5_0000325g0040 Nicotiana tabacum HOM05D005872 ORTHO05D008133 7.4e-15 84.0 70 60.0
Hma1.2p1_1010F.1_g247380 Hydrangea macrophylla HOM05D005872 ORTHO05D008133 9.7e-15 83.6 70 60.0
Phvul.010G048100 Phaseolus vulgaris HOM05D005872 ORTHO05D008133 9.7e-15 83.6 71 64.8
Prupe.6G060600 Prunus persica HOM05D005872 ORTHO05D008133 9.7e-15 83.6 70 62.9
Solyc07g061900.3 Solanum lycopersicum HOM05D005872 ORTHO05D008133 9.7e-15 83.6 69 60.9
Sopen07g030180 Solanum pennellii HOM05D005872 ORTHO05D008133 9.7e-15 83.6 69 60.9
PGSC0003DMG400007051 Solanum tuberosum HOM05D005872 ORTHO05D008133 9.7e-15 83.6 69 60.9
Sed0022906 Sechium edule HOM05D005872 ORTHO05D008133 1.3e-14 83.2 70 58.6
TAR369G0221 Trochodendron aralioides HOM05D005872 ORTHO05D008133 1.3e-14 83.2 70 57.1
TAR369G0416 Trochodendron aralioides HOM05D005872 ORTHO05D008133 1.3e-14 83.2 70 57.1
TWI75G1308 Tripterygium wilfordii HOM05D005872 ORTHO05D008133 2.2e-14 82.4 70 61.4
Actinidia34449 Actinidia chinensis HOM05D005872 ORTHO05D008133 3.7e-14 81.6 70 57.1
ClCG06G015810 Citrullus lanatus HOM05D005872 ORTHO05D008133 4.8e-14 81.3 69 59.4
Ah.08g220770 Amaranthus hybridus HOM05D005872 ORTHO05D008133 6.3e-14 80.9 70 58.6
Aqoxy4G02659 Aquilegia oxysepala HOM05D005872 ORTHO05D008133 6.3e-14 80.9 70 57.1
Cc01_g13960 Coffea canephora HOM05D005872 ORTHO05D008133 6.3e-14 80.9 70 58.6
Nn2g13627 Nelumbo nucifera HOM05D005872 ORTHO05D008133 6.3e-14 80.9 70 57.1
MD03G1073800 Malus domestica HOM05D005872 ORTHO05D008133 8.2e-14 80.5 70 60.0
CDE06G2541 Ceratophyllum demersum HOM05D005872 ORTHO05D008133 1.1e-13 80.1 70 55.7
CDE07G0691 Ceratophyllum demersum HOM05D005872 ORTHO05D008133 1.1e-13 80.1 70 55.7
PSO339G6296 Papaver somniferum HOM05D005872 ORTHO05D008133 1.1e-13 80.1 69 59.4
PSO384G4655 Papaver somniferum HOM05D005872 ORTHO05D008133 1.1e-13 80.1 69 59.4
arahy.Tifrunner.gnm1.ann1.MB6FU1 Arachis hypogaea HOM05D005872 ORTHO05D008133 1.4e-13 79.7 71 60.6
arahy.Tifrunner.gnm1.ann1.PIAF8F Arachis hypogaea HOM05D005872 ORTHO05D008133 1.4e-13 79.7 71 60.6
CiPaw.14G061000 Carya illinoinensis HOM05D005872 ORTHO05D008133 7.0e-13 77.4 70 54.3
AUR62001682 Chenopodium quinoa HOM05D005872 ORTHO05D008133 7.0e-13 77.4 69 58.0
FAN21G3245 Fragaria x ananassa HOM05D005872 ORTHO05D008133 7.0e-13 77.4 73 58.9
Psat4g224360 Pisum sativum HOM05D005872 ORTHO05D008133 9.1e-13 77.0 71 60.6
AUR62020100 Chenopodium quinoa HOM05D005872 ORTHO05D008133 1.2e-12 76.6 69 58.0
QL01p026804 Quercus lobata HOM05D005872 ORTHO05D008133 1.2e-12 76.6 73 60.3
MD11G1080100 Malus domestica HOM05D005872 ORTHO05D008133 1.6e-12 76.3 73 58.9
vmacro14583 Vaccinium macrocarpon HOM05D005872 ORTHO05D008133 1.6e-12 76.3 72 55.6
FAN16G1585 Fragaria x ananassa HOM05D005872 ORTHO05D008133 2.0e-12 75.9 73 57.5
Lj3g0000632 Lotus japonicus HOM05D005872 ORTHO05D008133 2.0e-12 75.9 71 57.7
RcHm_v2.0_Chr5g0068721 Rosa chinensis HOM05D005872 ORTHO05D008133 2.0e-12 75.9 73 57.5
EL10Ac7g16129 Beta vulgaris HOM05D005872 ORTHO05D008133 2.6e-12 75.5 70 58.6
FvH4_3g38221 Fragaria vesca HOM05D005872 ORTHO05D008133 2.6e-12 75.5 73 57.5
FAN11G1028 Fragaria x ananassa HOM05D005872 ORTHO05D008133 2.6e-12 75.5 73 57.5
MBI05_g03471_MAGBIO Magnolia biondii HOM05D005872 ORTHO05D008133 2.6e-12 75.5 71 54.9
DCAR_018967 Daucus carota HOM05D000012 ORTHO05D174931 3.5e-12 75.1 70 55.7
MSTRG.17870 Avicennia marina HOM05D005872 ORTHO05D008133 4.5e-12 74.7 70 55.7
Eucgr.J01939 Eucalyptus grandis HOM05D005872 ORTHO05D008133 4.5e-12 74.7 70 54.3
Oeu045518.2 Olea europaea HOM05D005872 ORTHO05D008133 4.5e-12 74.7 70 57.1
Ca_25798_v3 Cicer arietinum L. HOM05D005872 ORTHO05D008133 5.9e-12 74.3 70 57.1
SGA_v2.0_scaffold161G37856 Striga asiatica HOM05D005872 ORTHO05D008133 5.9e-12 74.3 70 54.3
Nn2g11395 Nelumbo nucifera HOM05D005872 ORTHO05D008133 1.3e-11 73.2 69 52.2
TPR.G33123 Trifolium pratense HOM05D005872 ORTHO05D008133 1.3e-11 73.2 71 56.3
unitig_0.g444 Utricularia gibba HOM05D005872 ORTHO05D008133 1.7e-11 72.8 69 58.0
Peaxi162Scf00003g04831 Petunia axillaris HOM05D005872 ORTHO05D008133 5.0e-11 71.2 70 52.9
SalBow2G3036 Salvia bowleyana HOM05D005872 ORTHO05D008133 5.0e-11 71.2 70 54.3
PGR119G2098 Punica granatum HOM05D005872 ORTHO05D008133 6.5e-11 70.9 70 52.9
Medtr8g006995 Medicago truncatula HOM05D005872 ORTHO05D008133 8.5e-11 70.5 71 54.9
ATR0618G074 Amborella trichopoda HOM05D005872 ORTHO05D008133 1.1e-10 70.1 70 51.4
Os03g0265400 Oryza sativa ssp. japonica HOM05D005872 ORTHO05D008133 1.5e-10 69.7 71 52.1
Migut.N00890 Erythranthe guttata HOM05D005872 ORTHO05D008133 1.9e-10 69.3 70 51.4
CSS0008565 Camellia sinensis var. sinensis HOM05D005872 ORTHO05D008133 2.5e-10 68.9 58 60.3
Lalb_Chr12g0210551 Lupinus albus HOM05D005872 ORTHO05D008133 1.2e-09 66.6 58 55.2
Zm00001eb011760 Zea mays HOM05D005872 ORTHO05D008133 3.6e-09 65.1 71 52.1
BcaC07g40681 Brassica carinata HOM05D005872 ORTHO05D017612 1.4e-08 63.2 32 87.5
C08p36790 Brassica napus HOM05D005872 ORTHO05D017612 1.4e-08 63.2 32 87.5
BolC8t51258H Brassica oleracea HOM05D005872 ORTHO05D017612 1.4e-08 63.2 32 87.5
SEGI_15715 Sequoiadendron giganteum HOM05D005872 ORTHO05D008133 1.1e-07 60.1 71 45.1
AagrBONN_evm.TU.Sc2ySwM_344.3555 Anthoceros agrestis HOM05D005872 ORTHO05D008133 9.7e-07 57.0 71 42.3
SMO347G0310 Selaginella moellendorffii HOM05D005872 ORTHO05D008133 1.3e-06 56.6 69 44.9
Pp3c8_21780 Physcomitrium patens HOM05D005872 ORTHO05D008133 4.8e-06 54.7 69 37.7
RcHm_v2.0_Chr5g0068671 Rosa chinensis HOM05D005872 ORTHO05D008133 8.2e-06 53.9 41 58.5


User provided reference genes

Program Settings