Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03723 Brassica carinata HOM05D003843 ORTHO05D091273 2.1e-112 409.1 206 100.0
C03p49270 Brassica napus HOM05D003871 ORTHO05D004621 2.1e-56 223.0 152 77.0
BolC3t17208H Brassica oleracea HOM05D003843 ORTHO05D004621 3.3e-54 215.7 353 43.1
MBI19_g17996_MAGBIO Magnolia biondii HOM05D003843 ORTHO05D004646 1.2e-14 84.3 304 28.0
Aa31LG5G8390 Aethionema arabicum HOM05D003843 ORTHO05D004646 2.6e-14 83.2 344 26.5
CARHR119240 Cardamine hirsuta HOM05D003843 ORTHO05D004646 4.4e-14 82.4 149 37.6
CsaV3_4G023170 Cucumis sativus L. HOM05D003843 ORTHO05D004646 4.4e-14 82.4 306 27.1
CsaV3_UNG234370 Cucumis sativus L. HOM05D003843 ORTHO05D004646 4.4e-14 82.4 306 27.1
Thhalv10001988m.g Eutrema salsugineum HOM05D003843 ORTHO05D004646 7.5e-14 81.6 149 37.6
A03p26810 Brassica napus HOM05D003843 ORTHO05D004646 2.2e-13 80.1 149 36.9
C03p32130 Brassica napus HOM05D003843 ORTHO05D004646 2.2e-13 80.1 149 36.9
BolC3t15555H Brassica oleracea HOM05D003843 ORTHO05D004646 2.2e-13 80.1 149 36.9
BraA03t11892Z Brassica rapa HOM05D003843 ORTHO05D004646 2.2e-13 80.1 149 36.9
Sp4g08320 Schrenkiella parvula HOM05D003843 ORTHO05D004646 2.9e-13 79.7 149 36.2
BcaB01g03038 Brassica carinata HOM05D003843 ORTHO05D004646 3.7e-13 79.3 149 36.9
Carub.0004s0747 Capsella rubella HOM05D003843 ORTHO05D004646 3.7e-13 79.3 149 36.2
VMungo1309G2340 Vigna mungo HOM05D003843 ORTHO05D004646 3.7e-13 79.3 137 38.0
AL4G20470 Arabidopsis lyrata HOM05D003843 ORTHO05D004646 6.4e-13 78.6 149 36.2
BcaB02g10062 Brassica carinata HOM05D003843 ORTHO05D004646 6.4e-13 78.6 149 38.3
BcaC02g10850 Brassica carinata HOM05D003843 ORTHO05D004646 6.4e-13 78.6 149 38.3
A07p17930 Brassica napus HOM05D003843 ORTHO05D004646 6.4e-13 78.6 149 38.3
C04p24530 Brassica napus HOM05D003843 ORTHO05D004646 6.4e-13 78.6 149 38.3
BolC4t23951H Brassica oleracea HOM05D003843 ORTHO05D004646 6.4e-13 78.6 149 38.3
BraA07t29511Z Brassica rapa HOM05D003843 ORTHO05D004646 6.4e-13 78.6 149 38.3
Cpa.g.sc84.81 Carica papaya HOM05D003843 ORTHO05D004646 8.3e-13 78.2 326 26.7
Ciclev10015276m.g Citrus clementina HOM05D003843 ORTHO05D004646 8.3e-13 78.2 149 35.6
Nitab4.5_0000492g0220 Nicotiana tabacum HOM05D003843 ORTHO05D004646 8.3e-13 78.2 149 35.6
Nitab4.5_0008505g0020 Nicotiana tabacum HOM05D003843 ORTHO05D004646 8.3e-13 78.2 149 35.6
Sopen11g024630 Solanum pennellii HOM05D003843 ORTHO05D004646 8.3e-13 78.2 149 35.6
Haze_20346 Corylus avellana HOM05D003843 ORTHO05D004646 1.1e-12 77.8 152 35.5
Hma1.2p1_2801F.1_g328800 Hydrangea macrophylla HOM05D003843 ORTHO05D004646 1.1e-12 77.8 161 36.0
Manes.01G175000 Manihot esculenta HOM05D003843 ORTHO05D004646 1.1e-12 77.8 149 35.6
Atru.chr3.2831 Acer truncatum HOM05D003843 ORTHO05D004646 1.4e-12 77.4 149 35.6
Nitab4.5_0005212g0010 Nicotiana tabacum HOM05D003843 ORTHO05D004646 1.4e-12 77.4 186 30.6
Potri.001G222700 Populus trichocarpa HOM05D003843 ORTHO05D004646 1.4e-12 77.4 149 35.6
Sabra09G0011400 Salix brachista HOM05D003843 ORTHO05D004646 1.4e-12 77.4 149 35.6
Thecc.09G256000 Theobroma cacao HOM05D003843 ORTHO05D004646 1.4e-12 77.4 149 35.6
arahy.Tifrunner.gnm1.ann1.286ZLS Arachis hypogaea HOM05D003843 ORTHO05D004646 1.9e-12 77.0 149 35.6
arahy.Tifrunner.gnm1.ann1.66YQP5 Arachis hypogaea HOM05D003843 ORTHO05D004646 1.9e-12 77.0 149 35.6
Ca_03426_v3 Cicer arietinum L. HOM05D003843 ORTHO05D004646 1.9e-12 77.0 149 35.6
Glyma.03G004400 Glycine max HOM05D003843 ORTHO05D004646 1.9e-12 77.0 149 35.6
Gohir.A07G118200 Gossypium hirsutum HOM05D003843 ORTHO05D004646 1.9e-12 77.0 149 34.9
Gohir.D07G122600 Gossypium hirsutum HOM05D003843 ORTHO05D004646 1.9e-12 77.0 149 34.9
Gorai.001G132400 Gossypium raimondii HOM05D003843 ORTHO05D004646 1.9e-12 77.0 149 34.9
Lalb_Chr14g0365261 Lupinus albus HOM05D003843 ORTHO05D004646 1.9e-12 77.0 149 35.6
Lalb_Chr24g0400701 Lupinus albus HOM05D003843 ORTHO05D004646 1.9e-12 77.0 149 35.6
Peaxi162Scf00032g02619 Petunia axillaris HOM05D003843 ORTHO05D004646 1.9e-12 77.0 149 35.6
Phvul.001G102200 Phaseolus vulgaris HOM05D003843 ORTHO05D004646 1.9e-12 77.0 149 35.6
Solyc11g062430.2 Solanum lycopersicum HOM05D003843 ORTHO05D004646 1.9e-12 77.0 149 35.6
VMungo1383G3260 Vigna mungo HOM05D003843 ORTHO05D004646 1.9e-12 77.0 149 35.6
MD03G1163800 Malus domestica HOM05D003843 ORTHO05D004646 2.4e-12 76.6 149 35.6
Nitab4.5_0000718g0260 Nicotiana tabacum HOM05D003843 ORTHO05D004646 2.4e-12 76.6 149 34.9
Os01g0279200 Oryza sativa ssp. japonica HOM05D003843 ORTHO05D004646 2.4e-12 76.6 149 34.9
Psat3g083920 Pisum sativum HOM05D003843 ORTHO05D004646 2.4e-12 76.6 149 35.6
THA.LOC104826467 Tarenaya hassleriana HOM05D003843 ORTHO05D004646 2.4e-12 76.6 149 34.9
TPR.G23658 Trifolium pratense HOM05D003843 ORTHO05D004646 2.4e-12 76.6 149 35.6
Zm00001eb332660 Zea mays HOM05D003843 ORTHO05D004646 2.4e-12 76.6 149 34.9
AT2G26990 Arabidopsis thaliana HOM05D003843 ORTHO05D004646 3.2e-12 76.3 149 35.6
Migut.N02389 Erythranthe guttata HOM05D003843 ORTHO05D004646 3.2e-12 76.3 149 34.9
MD11G1176300 Malus domestica HOM05D003843 ORTHO05D004646 3.2e-12 76.3 149 35.6
Potri.009G020900 Populus trichocarpa HOM05D003843 ORTHO05D004646 3.2e-12 76.3 149 34.9
Prupe.6G156800 Prunus persica HOM05D003843 ORTHO05D004646 3.2e-12 76.3 149 35.6
Hund19273 Selenicereus undatus HOM05D003843 ORTHO05D004646 3.2e-12 76.3 149 34.9
THA.LOC104800481 Tarenaya hassleriana HOM05D003843 ORTHO05D004646 3.2e-12 76.3 149 34.9
Zm00001eb128990 Zea mays HOM05D003843 ORTHO05D004646 3.2e-12 76.3 149 34.9
AUR62033585 Chenopodium quinoa HOM05D003843 ORTHO05D004646 4.1e-12 75.9 149 34.9
AUR62041414 Chenopodium quinoa HOM05D003843 ORTHO05D004646 4.1e-12 75.9 149 34.9
Gohir.A09G107400 Gossypium hirsutum HOM05D003843 ORTHO05D004646 4.1e-12 75.9 149 34.9
Gohir.D09G104200 Gossypium hirsutum HOM05D003843 ORTHO05D004646 4.1e-12 75.9 149 34.9
Gorai.006G121500 Gossypium raimondii HOM05D003843 ORTHO05D004646 4.1e-12 75.9 149 34.9
HanXRQChr04g0125421 Helianthus annuus HOM05D003843 ORTHO05D004646 4.1e-12 75.9 149 34.9
HanXRQChr06g0178281 Helianthus annuus HOM05D003843 ORTHO05D004646 4.1e-12 75.9 149 34.9
Lj1g0018589 Lotus japonicus HOM05D003843 ORTHO05D004646 4.1e-12 75.9 149 34.9
MD00G1108200 Malus domestica HOM05D003843 ORTHO05D004646 4.1e-12 75.9 149 35.6
Pp3c9_2060 Physcomitrium patens HOM05D003843 ORTHO05D004646 4.1e-12 75.9 344 25.0
RcHm_v2.0_Chr5g0050051 Rosa chinensis HOM05D003843 ORTHO05D004646 4.1e-12 75.9 149 35.6
PGSC0003DMG400032509 Solanum tuberosum HOM05D003843 ORTHO05D004646 4.1e-12 75.9 149 34.9
SGA_v2.0_scaffold26G11383 Striga asiatica HOM05D003843 ORTHO05D004646 4.1e-12 75.9 149 34.9
TWI79G0192 Tripterygium wilfordii HOM05D003843 ORTHO05D004646 4.1e-12 75.9 149 35.6
arahy.Tifrunner.gnm1.ann1.802V4W Arachis hypogaea HOM05D003843 ORTHO05D004646 5.4e-12 75.5 149 34.9
arahy.Tifrunner.gnm1.ann1.CI8U65 Arachis hypogaea HOM05D003843 ORTHO05D004646 5.4e-12 75.5 149 34.9
CSS0016417 Camellia sinensis var. sinensis HOM05D003843 ORTHO05D004646 5.4e-12 75.5 149 34.9
CSS0043612 Camellia sinensis var. sinensis HOM05D003843 ORTHO05D004646 5.4e-12 75.5 149 34.9
Mapoly0063s0071 Marchantia polymorpha HOM05D003843 ORTHO05D004646 5.4e-12 75.5 149 34.9
Medtr7g087530 Medicago truncatula HOM05D003843 ORTHO05D004646 5.4e-12 75.5 149 34.9
Rhsim13G0201300 Rhododendron simsii HOM05D003843 ORTHO05D004646 5.4e-12 75.5 149 34.9
ATR1096G029 Amborella trichopoda HOM05D003843 ORTHO05D004646 7.0e-12 75.1 149 34.2
CAN.G96.3 Capsicum annuum HOM05D003843 ORTHO05D004646 7.0e-12 75.1 149 34.2
CBR_g24102 Chara braunii HOM05D003843 ORTHO05D004646 7.0e-12 75.1 149 34.9
ClCG02G024160 Citrullus lanatus HOM05D003843 ORTHO05D004646 7.0e-12 75.1 149 34.9
Cc00_g24230 Coffea canephora HOM05D003843 ORTHO05D004646 7.0e-12 75.1 149 34.9
ECA236G0656 Erigeron canadensis HOM05D003843 ORTHO05D004646 7.0e-12 75.1 149 34.2
Eucgr.B03772 Eucalyptus grandis HOM05D003843 ORTHO05D004646 7.0e-12 75.1 149 34.9
Glyma.19G121500 Glycine max HOM05D003843 ORTHO05D004646 7.0e-12 75.1 149 34.9
Peaxi162Scf00791g00019 Petunia axillaris HOM05D003843 ORTHO05D004646 7.0e-12 75.1 149 34.2
PGR102G1130 Punica granatum HOM05D003843 ORTHO05D004646 7.0e-12 75.1 149 34.9
MSTRG.21332 Avicennia marina HOM05D003843 ORTHO05D004646 9.2e-12 74.7 149 34.2
EL10Ac7g16998 Beta vulgaris HOM05D003843 ORTHO05D004646 9.2e-12 74.7 149 34.2
CiPaw.09G163100 Carya illinoinensis HOM05D003843 ORTHO05D004646 9.2e-12 74.7 149 36.2
MELO3C014699.2 Cucumis melo HOM05D003843 ORTHO05D004646 9.2e-12 74.7 149 34.9
CsaV3_4G017290 Cucumis sativus L. HOM05D003843 ORTHO05D004646 9.2e-12 74.7 149 34.9
Sed0007264 Sechium edule HOM05D003843 ORTHO05D004646 9.2e-12 74.7 149 34.9
SGA_v2.0_scaffold3G01428 Striga asiatica HOM05D003843 ORTHO05D004646 9.2e-12 74.7 149 34.2
TWI75G1397 Tripterygium wilfordii HOM05D003843 ORTHO05D004646 9.2e-12 74.7 149 34.9
Oeu013457.1 Olea europaea HOM05D003843 ORTHO05D004646 1.2e-11 74.3 153 35.9
Pp3c17_10150 Physcomitrium patens HOM05D003843 ORTHO05D004646 1.2e-11 74.3 344 24.7
Haze_20342 Corylus avellana HOM05D003843 ORTHO05D004646 1.6e-11 73.9 149 34.9
Glyma.05G079400 Glycine max HOM05D003843 ORTHO05D004646 1.6e-11 73.9 149 33.6
TAR623G0430 Trochodendron aralioides HOM05D003843 ORTHO05D004646 1.6e-11 73.9 149 34.2
CDE07G0877 Ceratophyllum demersum HOM05D003843 ORTHO05D004646 2.0e-11 73.6 149 34.2
Nn7g37169 Nelumbo nucifera HOM05D003843 ORTHO05D004646 2.0e-11 73.6 149 34.2
PSO339G6626 Papaver somniferum HOM05D003843 ORTHO05D004646 2.0e-11 73.6 149 33.6
PSO384G3915 Papaver somniferum HOM05D003843 ORTHO05D004646 2.0e-11 73.6 149 33.6
QL07p015316 Quercus lobata HOM05D003843 ORTHO05D004646 2.0e-11 73.6 149 34.2
GSVIVG01025835001 Vitis vinifera HOM05D003843 ORTHO05D004646 2.0e-11 73.6 149 34.2
CAN.G1332.3 Capsicum annuum HOM05D003843 ORTHO05D004646 2.7e-11 73.2 149 33.6
Solyc01g008840.3 Solanum lycopersicum HOM05D003843 ORTHO05D004646 2.7e-11 73.2 149 33.6
Sopen01g004350 Solanum pennellii HOM05D003843 ORTHO05D004646 2.7e-11 73.2 149 33.6
vmacro04105 Vaccinium macrocarpon HOM05D003843 ORTHO05D004646 2.7e-11 73.2 153 35.3
Actinidia07000 Actinidia chinensis HOM05D003843 ORTHO05D004646 3.5e-11 72.8 149 34.2
AagrBONN_evm.TU.Sc2ySwM_344.3619 Anthoceros agrestis HOM05D003843 ORTHO05D004646 3.5e-11 72.8 149 34.2
Duzib168G0367 Durio zibethinus HOM05D003843 ORTHO05D004646 3.5e-11 72.8 149 34.2
Pp3c15_2200 Physcomitrium patens HOM05D003843 ORTHO05D004646 3.5e-11 72.8 149 34.2
Sabra16G0132300 Salix brachista HOM05D003843 ORTHO05D004646 3.5e-11 72.8 149 34.2
SEGI_33472 Sequoiadendron giganteum HOM05D003843 ORTHO05D004646 3.5e-11 72.8 149 33.6
Sc20g0005970 Simmondsia chinensis HOM05D003843 ORTHO05D004646 3.5e-11 72.8 149 34.2
PGSC0003DMG400022712 Solanum tuberosum HOM05D003843 ORTHO05D004646 3.5e-11 72.8 149 33.6
PGSC0003DMG400028109 Solanum tuberosum HOM05D003843 ORTHO05D004646 3.5e-11 72.8 149 33.6
EL10Ac1g01678 Beta vulgaris HOM05D003843 ORTHO05D004646 4.6e-11 72.4 147 34.0
FvH4_4g27570 Fragaria vesca HOM05D003843 ORTHO05D004646 4.6e-11 72.4 149 34.2
FAN07G2602 Fragaria x ananassa HOM05D003843 ORTHO05D004646 4.6e-11 72.4 149 34.2
FAN12G3037 Fragaria x ananassa HOM05D003843 ORTHO05D004646 4.6e-11 72.4 149 34.2
FAN12G3698 Fragaria x ananassa HOM05D003843 ORTHO05D004646 4.6e-11 72.4 149 34.2
Lj2C938G6 Lonicera japonica HOM05D003843 ORTHO05D004646 4.6e-11 72.4 149 32.9
QL07p015334 Quercus lobata HOM05D003843 ORTHO05D004646 4.6e-11 72.4 149 34.2
SMO117G0130 Selaginella moellendorffii HOM05D003843 ORTHO05D004646 6.0e-11 72.0 149 32.9
Manes.02G133500 Manihot esculenta HOM05D003843 ORTHO05D004646 7.8e-11 71.6 149 33.6
CANSAT64G0238 Cannabis sativa HOM05D003843 ORTHO05D004646 1.0e-10 71.2 149 32.9
Duzib150G0366 Durio zibethinus HOM05D003843 ORTHO05D004646 1.3e-10 70.9 149 34.2
RcHm_v2.0_Chr4g0435421 Rosa chinensis HOM05D003843 ORTHO05D004646 1.3e-10 70.9 149 33.6
Glyma.19G072400 Glycine max HOM05D003843 ORTHO05D004646 2.3e-10 70.1 149 32.9
Solyc10g081150.3 Solanum lycopersicum HOM05D003843 ORTHO05D004646 2.3e-10 70.1 149 32.2
Aqoxy2G00042 Aquilegia oxysepala HOM05D003843 ORTHO05D004646 3.0e-10 69.7 344 24.7
CAN.G128.106 Capsicum annuum HOM05D003843 ORTHO05D004646 3.9e-10 69.3 149 32.2
SEGI_33516 Sequoiadendron giganteum HOM05D003843 ORTHO05D004646 3.9e-10 69.3 154 32.5
BcaC01g04918 Brassica carinata HOM05D003843 ORTHO05D004646 6.6e-10 68.6 145 33.8
Sopen10g031650 Solanum pennellii HOM05D003843 ORTHO05D004646 6.6e-10 68.6 149 31.5
DCAR_013515 Daucus carota HOM05D003843 ORTHO05D004646 8.6e-10 68.2 149 32.2
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 1.1e-09 67.8 40 85.0
CARHR063930 Cardamine hirsuta HOM05D003843 ORTHO05D004646 1.1e-09 67.8 151 31.8
vmacro14282 Vaccinium macrocarpon HOM05D003843 ORTHO05D004646 1.1e-09 67.8 149 34.9
AL8G39810 Arabidopsis lyrata HOM05D003843 ORTHO05D004646 1.5e-09 67.4 339 24.2
DCAR_020626 Daucus carota HOM05D003843 ORTHO05D004646 2.5e-09 66.6 149 32.9
BraA03t13201Z Brassica rapa HOM05D000209 ORTHO05D000129 4.3e-09 65.9 40 82.5
Sed0025468 Sechium edule HOM05D003843 ORTHO05D004646 7.3e-09 65.1 149 34.2
Haze_26275 Corylus avellana HOM05D003843 ORTHO05D004646 2.1e-08 63.5 153 30.1
Hund04069 Selenicereus undatus HOM05D003843 ORTHO05D004646 2.8e-08 63.2 137 35.0
Dinv12305 Davidia involucrata HOM05D003843 ORTHO05D004646 4.7e-08 62.4 124 38.7
Lsat_1_v5_gn_8_85240 Lactuca sativa HOM05D003843 ORTHO05D004646 4.7e-08 62.4 133 33.8
Cre01.g030800 Chlamydomonas reinhardtii HOM05D003843 ORTHO05D004646 8.1e-08 61.6 148 31.1
HPP92_012450 Vanilla planifolia HOM05D003843 ORTHO05D004646 5.2e-07 58.9 325 24.3
PRCOL_00002476 Prasinoderma coloniale HOM05D003843 ORTHO05D004646 1.2e-06 57.8 147 29.3
SHI24965 Sapria himalayana HOM05D003843 ORTHO05D004646 3.4e-06 56.2 130 32.3


User provided reference genes

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