Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 0.0e+00 1474.5 779 100.0
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 0.0e+00 1424.5 820 93.2
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 0.0e+00 1410.2 820 92.4
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 0.0e+00 1399.0 822 91.6
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 0.0e+00 1274.6 854 82.1
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 0.0e+00 1269.2 825 86.1
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 0.0e+00 1253.8 851 81.1
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 0.0e+00 1252.3 843 80.2
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 0.0e+00 1246.9 844 80.1
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 0.0e+00 1237.6 839 79.3
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 0.0e+00 1223.0 839 78.2
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 0.0e+00 1205.7 846 79.2
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 0.0e+00 1205.7 696 91.5
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 0.0e+00 1188.7 845 80.0
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 0.0e+00 1186.8 844 79.4
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 0.0e+00 1183.3 845 79.8
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 0.0e+00 1181.4 826 78.7
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 0.0e+00 1165.6 835 78.3
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 0.0e+00 1130.5 904 69.6
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 1.4e-294 1016.1 850 65.3
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 1.0e-233 813.9 858 54.8
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 6.8e-233 811.2 875 55.1
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 8.9e-233 810.8 870 54.9
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 3.4e-232 808.9 870 54.0
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 1.0e-228 797.3 881 52.8
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 2.5e-227 792.7 866 55.1
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 1.6e-226 790.0 829 56.6
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 2.3e-225 786.2 859 54.1
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 4.4e-224 781.9 872 53.3
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 7.5e-224 781.2 871 52.9
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 9.8e-224 780.8 865 53.1
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 1.7e-223 780.0 829 55.6
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 2.2e-223 779.6 865 53.9
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 2.2e-223 779.6 871 52.9
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 2.2e-223 779.6 855 55.7
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 2.4e-222 776.2 827 54.8
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 1.2e-221 773.9 865 53.8
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 1.6e-221 773.5 875 54.2
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 3.5e-221 772.3 855 53.0
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 6.0e-221 771.5 868 52.9
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 6.0e-221 771.5 870 52.4
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.7e-220 770.0 869 53.7
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.5e-219 766.9 865 53.9
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 1.5e-219 766.9 874 52.7
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 1.9e-219 766.5 858 53.0
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 2.8e-218 762.7 879 51.9
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.1e-217 760.8 841 54.6
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 1.8e-217 760.0 978 48.7
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 1.2e-216 757.3 865 53.9
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 6.4e-215 751.5 878 51.4
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 1.9e-214 750.0 883 50.2
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 2.4e-214 749.6 869 51.3
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 2.4e-214 749.6 864 53.9
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 4.1e-214 748.8 863 51.9
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 1.6e-213 746.9 859 52.2
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 2.7e-213 746.1 868 51.6
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 7.8e-213 744.6 909 51.4
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 1.3e-212 743.8 863 51.3
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 8.6e-212 741.1 842 51.8
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 7.3e-211 738.0 865 51.2
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 2.8e-210 736.1 828 53.0
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 6.2e-210 734.9 857 51.1
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 6.8e-209 731.5 879 49.9
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 1.5e-208 730.3 865 50.1
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 2.6e-208 729.6 870 50.1
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 7.6e-208 728.0 858 50.3
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 2.2e-207 726.5 868 51.0
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 3.8e-207 725.7 838 52.9
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 1.4e-206 723.8 867 50.6
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 5.4e-206 721.8 864 51.5
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 2.1e-205 719.9 831 51.1
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 2.3e-204 716.5 852 50.0
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 8.7e-204 714.5 773 54.9
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 2.5e-203 713.0 869 49.8
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 1.3e-202 710.7 891 48.4
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 4.0e-201 705.7 864 50.1
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 4.0e-201 705.7 843 50.9
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 2.0e-200 703.4 870 50.3
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 3.4e-200 702.6 839 50.1
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 3.8e-199 699.1 867 49.7
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 8.4e-199 698.0 881 48.8
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 1.6e-197 693.7 853 50.2
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 2.1e-197 693.3 844 49.6
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 3.9e-196 689.1 932 47.5
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 5.1e-196 688.7 755 54.6
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 8.7e-196 688.0 737 55.5
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 3.3e-195 686.0 874 49.3
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 9.6e-195 684.5 841 49.0
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 8.1e-194 681.4 767 53.7
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 1.8e-193 680.2 841 49.8
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 3.1e-193 679.5 873 47.8
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 6.9e-193 678.3 768 51.6
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 1.2e-192 677.6 849 49.5
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 7.6e-192 674.9 840 50.2
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 1.3e-191 674.1 865 49.8
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 3.8e-191 672.5 834 48.0
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 8.4e-191 671.4 814 49.3
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 2.4e-190 669.8 828 48.8
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 9.3e-190 667.9 950 44.5
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 3.9e-188 662.5 553 67.1
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 1.5e-187 660.6 867 46.0
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 9.6e-187 657.9 863 47.4
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 1.5e-184 650.6 838 48.6
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 4.5e-184 649.0 637 57.9
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 2.5e-182 643.3 836 47.4
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 7.9e-181 638.3 652 55.7
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 1.3e-180 637.5 850 46.2
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 1.1e-179 634.4 902 44.7
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 1.5e-179 634.0 774 50.0
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 2.1e-178 630.2 878 44.2
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 6.3e-178 628.6 840 45.0
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 3.9e-172 609.4 611 56.0
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 1.5e-168 597.4 814 46.2
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 3.4e-168 596.3 712 50.7
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 4.5e-168 595.9 779 48.3
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 2.0e-160 570.5 857 43.4
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 1.7e-159 567.4 846 43.6
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 2.5e-158 563.5 551 57.7
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 6.1e-157 558.9 853 43.4
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 9.4e-150 535.0 456 66.0
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 6.7e-148 528.9 850 42.7
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 1.6e-144 517.7 840 41.8
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 2.7e-144 516.9 922 39.9
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 5.0e-143 512.7 747 43.2
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 1.5e-142 511.1 768 43.2
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 2.7e-136 490.3 864 39.7
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 5.0e-135 486.1 700 43.9
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 3.4e-131 473.4 1094 35.3
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 4.0e-124 449.9 715 39.7
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 1.8e-121 441.0 851 35.7
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 5.4e-113 412.9 559 48.3
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 3.0e-111 407.1 584 44.9
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 2.1e-104 384.4 528 45.8
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 2.8e-101 374.0 547 43.1
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 1.1e-97 362.1 799 33.9
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 1.1e-92 345.5 572 37.6
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 9.6e-86 322.4 336 57.7
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 2.1e-85 321.2 421 48.2
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 2.2e-82 311.2 338 58.0
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 2.2e-82 311.2 338 58.0
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 3.6e-77 293.9 664 31.8
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 3.7e-61 240.7 259 56.4
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 5.3e-60 236.9 278 51.4
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 1.4e-52 212.2 242 55.0
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 5.3e-52 210.3 178 65.7
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 2.2e-50 204.9 345 40.3
Cpa.g.sc5.277 Carica papaya HOM05D004054 ORTHO05D004945 2.0e-46 191.8 316 41.8
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 4.4e-46 190.7 195 56.4
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 1.3e-37 162.5 177 57.6
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 1.7e-37 162.2 257 45.1
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 1.6e-35 155.6 170 54.1
C08p43480 Brassica napus HOM05D004054 ORTHO05D004945 3.2e-33 147.9 100 75.0
RcHm_v2.0_Chr1g0331861 Rosa chinensis HOM05D004054 ORTHO05D004945 4.2e-33 147.5 140 55.0
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 2.7e-32 144.8 108 70.4
A06p30220 Brassica napus HOM05D003604 ORTHO05D004110 3.5e-27 127.9 75 86.7
BolC2t11814H Brassica oleracea HOM05D004054 ORTHO05D004945 2.9e-26 124.8 103 67.0
Gohir.A12G166900 Gossypium hirsutum HOM05D004054 ORTHO05D004945 2.5e-25 121.7 195 40.5
BcaC08g44394 Brassica carinata HOM05D004054 ORTHO05D004945 4.2e-25 120.9 195 44.6
CBR_g39858 Chara braunii HOM05D004054 ORTHO05D009492 8.3e-21 106.7 346 28.0
Lalb_Chr17g0340371 Lupinus albus HOM05D004054 ORTHO05D004945 8.8e-15 86.7 60 75.0
unitig_8.g3946 Utricularia gibba HOM05D004054 ORTHO05D004945 2.8e-13 81.6 137 35.8
C06p10280 Brassica napus HOM05D011797 ORTHO05D012335 7.8e-11 73.6 48 79.2
Lsat_1_v5_gn_3_52120 Lactuca sativa HOM05D004054 ORTHO05D004945 7.8e-11 73.6 64 54.7
Lsat_1_v5_gn_7_73540 Lactuca sativa HOM05D004054 ORTHO05D004945 7.8e-11 73.6 59 57.6
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 7.8e-11 73.6 101 42.6
BolC3t17207H Brassica oleracea HOM05D004054 ORTHO05D004945 2.8e-08 65.1 41 80.5
CBR_g39853 Chara braunii HOM05D000019 ORTHO05D000002 2.8e-08 65.1 47 63.8
BcaC04g21302 Brassica carinata HOM05D011695 ORTHO05D017500 3.6e-08 64.7 89 47.2
BcaC07g41060 Brassica carinata HOM05D011695 ORTHO05D017500 3.6e-08 64.7 89 47.2
C08p40590 Brassica napus HOM05D011695 ORTHO05D017500 3.6e-08 64.7 89 47.2
C02p41390 Brassica napus HOM05D011695 ORTHO05D017500 1.8e-07 62.4 89 44.9
BolC8t48037H Brassica oleracea HOM05D011695 ORTHO05D017500 2.3e-07 62.0 89 46.1
C04p24100 Brassica napus HOM05D011695 ORTHO05D017500 8.9e-07 60.1 85 45.9
C09p61440 Brassica napus HOM05D011695 ORTHO05D017500 4.4e-06 57.8 89 44.9
Aqoxy4G02344 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 5.7e-06 57.4 69 47.8
CBR_g39856 Chara braunii HOM05D000019 ORTHO05D000353 7.5e-06 57.0 82 34.1
MBI09_g47007_MAGBIO Magnolia biondii HOM05D003023 ORTHO05D018021 9.8e-06 56.6 101 37.6


User provided reference genes

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