Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03671 Brassica carinata HOM05D012125 ORTHO05D001295 6.9e-53 210.3 102 100.0
BolC3t17276H Brassica oleracea HOM05D012125 ORTHO05D001295 6.9e-53 210.3 102 100.0
C03p49810 Brassica napus HOM05D012125 ORTHO05D001295 3.4e-52 208.0 102 99.0
BcaB04g20741 Brassica carinata HOM05D012125 ORTHO05D001295 3.1e-45 184.9 102 85.3
BcaC05g28563 Brassica carinata HOM05D012125 ORTHO05D001295 7.0e-45 183.7 102 86.3
C05p46600 Brassica napus HOM05D012125 ORTHO05D001295 7.0e-45 183.7 102 86.3
BolC5t33388H Brassica oleracea HOM05D012125 ORTHO05D001295 7.0e-45 183.7 102 86.3
A05p30720 Brassica napus HOM05D012125 ORTHO05D001295 9.1e-45 183.3 102 85.3
BraA05t21913Z Brassica rapa HOM05D012125 ORTHO05D001295 1.2e-44 183.0 102 85.3
Sp3g16940 Schrenkiella parvula HOM05D012125 ORTHO05D001295 2.0e-44 182.2 102 85.3
Thhalv10021820m.g Eutrema salsugineum HOM05D012125 ORTHO05D001295 2.9e-43 178.3 102 83.3
BcaB06g25938 Brassica carinata HOM05D012125 ORTHO05D001295 5.2e-40 167.5 104 80.8
Carub.0003s1868 Capsella rubella HOM05D012125 ORTHO05D001295 4.1e-37 157.9 103 73.8
CARHR094290 Cardamine hirsuta HOM05D012125 ORTHO05D001295 5.9e-36 154.1 106 73.6
BcaNung06097 Brassica carinata HOM05D012125 ORTHO05D001295 7.7e-36 153.7 102 76.5
Aa31LG8G5680 Aethionema arabicum HOM05D001848 ORTHO05D001295 7.5e-31 137.1 103 68.9
Nitab4.5_0011417g0010 Nicotiana tabacum HOM05D001848 ORTHO05D001295 2.3e-11 72.4 108 41.7
CAN.G322.111 Capsicum annuum HOM05D001848 ORTHO05D001295 5.0e-11 71.2 108 40.7
Cfa008554 Carpinus fangiana HOM05D001848 ORTHO05D001295 5.0e-11 71.2 99 39.4
Haze_11072 Corylus avellana HOM05D001848 ORTHO05D001295 5.0e-11 71.2 95 40.0
QL11p042360 Quercus lobata HOM05D001848 ORTHO05D001295 5.0e-11 71.2 104 41.3
Eucgr.I01246 Eucalyptus grandis HOM05D001848 ORTHO05D001295 4.3e-10 68.2 102 43.1
Rhsim05G0076600 Rhododendron simsii HOM05D001848 ORTHO05D001295 4.3e-10 68.2 100 44.0
Lj3g0013447 Lotus japonicus HOM05D001848 ORTHO05D001295 5.6e-10 67.8 101 41.6
Nn1g08244 Nelumbo nucifera HOM05D001848 ORTHO05D001295 7.3e-10 67.4 104 41.3
Potri.014G149900 Populus trichocarpa HOM05D001848 ORTHO05D001295 7.3e-10 67.4 101 41.6
Sc08g0000310 Simmondsia chinensis HOM05D001848 ORTHO05D001295 7.3e-10 67.4 99 42.4
TAR636G3109 Trochodendron aralioides HOM05D001848 ORTHO05D001295 9.5e-10 67.0 105 38.1
AT5G48485 Arabidopsis thaliana HOM05D001848 ORTHO05D001295 1.2e-09 66.6 99 40.4
CiPaw.05G061200 Carya illinoinensis HOM05D001848 ORTHO05D001295 2.1e-09 65.9 109 38.5
Potri.T125404 Populus trichocarpa HOM05D001848 ORTHO05D001295 2.1e-09 65.9 107 44.9
Atru.chr3.1703 Acer truncatum HOM05D001848 ORTHO05D001295 2.8e-09 65.5 90 38.9
MELO3C017674.2 Cucumis melo HOM05D001848 ORTHO05D001295 2.8e-09 65.5 102 35.3
Phvul.008G137100 Phaseolus vulgaris HOM05D001848 ORTHO05D001295 2.8e-09 65.5 74 47.3
AL8G21340 Arabidopsis lyrata HOM05D001848 ORTHO05D001295 3.6e-09 65.1 100 41.0
arahy.Tifrunner.gnm1.ann1.UI26XR Arachis hypogaea HOM05D001848 ORTHO05D001295 3.6e-09 65.1 84 40.5
CiPaw.14G043500 Carya illinoinensis HOM05D001848 ORTHO05D001295 3.6e-09 65.1 102 38.2
Sc17g0001710 Simmondsia chinensis HOM05D001848 ORTHO05D001295 3.6e-09 65.1 100 40.0
CAN.G129.19 Capsicum annuum HOM05D001848 ORTHO05D001295 4.7e-09 64.7 95 43.2
DCAR_018625 Daucus carota HOM05D001848 ORTHO05D001295 4.7e-09 64.7 98 37.8
FvH4_2g17830 Fragaria vesca HOM05D001848 ORTHO05D001295 4.7e-09 64.7 96 43.8
FAN15G3178 Fragaria x ananassa HOM05D001848 ORTHO05D001295 4.7e-09 64.7 96 43.8
FAN24G1271 Fragaria x ananassa HOM05D001848 ORTHO05D001295 4.7e-09 64.7 96 43.8
VMungo1383G1556 Vigna mungo HOM05D001848 ORTHO05D001295 4.7e-09 64.7 73 47.9
Aqoxy2G03960 Aquilegia oxysepala HOM05D001848 ORTHO05D001295 6.2e-09 64.3 104 36.5
Lalb_Chr01g0002711 Lupinus albus HOM05D001848 ORTHO05D001295 6.2e-09 64.3 96 37.5
Nn1g07985 Nelumbo nucifera HOM05D001848 ORTHO05D001295 6.2e-09 64.3 104 38.5
Nn1g08247 Nelumbo nucifera HOM05D001848 ORTHO05D001295 6.2e-09 64.3 104 38.5
Os07g0290200 Oryza sativa ssp. japonica HOM05D001848 ORTHO05D001295 6.2e-09 64.3 93 40.9
Potri.009G112553 Populus trichocarpa HOM05D001848 ORTHO05D001295 6.2e-09 64.3 107 43.9
PGSC0003DMG400025168 Solanum tuberosum HOM05D001848 ORTHO05D001295 8.0e-09 63.9 103 37.9
GSVIVG01031677001 Vitis vinifera HOM05D001848 ORTHO05D001295 8.0e-09 63.9 94 38.3
Glyma.08G344300 Glycine max HOM05D001848 ORTHO05D001295 1.1e-08 63.5 94 39.4
Atru.chr12.2390 Acer truncatum HOM05D001848 ORTHO05D001295 1.4e-08 63.2 76 43.4
arahy.Tifrunner.gnm1.ann1.N7EMKY Arachis hypogaea HOM05D001848 ORTHO05D001295 1.4e-08 63.2 85 40.0
Solyc01g066910.3 Solanum lycopersicum HOM05D001848 ORTHO05D001295 1.4e-08 63.2 104 39.4
Ciclev10017274m.g Citrus clementina HOM05D001848 ORTHO05D001295 1.8e-08 62.8 96 41.7
RcHm_v2.0_Chr6g0282861 Rosa chinensis HOM05D001848 ORTHO05D001295 1.8e-08 62.8 96 44.8
arahy.Tifrunner.gnm1.ann1.QR3PTX Arachis hypogaea HOM05D001848 ORTHO05D001295 2.3e-08 62.4 85 38.8
CSS0044367 Camellia sinensis var. sinensis HOM05D001848 ORTHO05D001295 2.3e-08 62.4 97 41.2
HanXRQChr05g0141121 Helianthus annuus HOM05D001848 ORTHO05D001295 2.3e-08 62.4 96 39.6
Manes.15G148400 Manihot esculenta HOM05D001848 ORTHO05D001295 2.3e-08 62.4 99 44.4
TPR.G28530 Trifolium pratense HOM05D001848 ORTHO05D001295 2.3e-08 62.4 98 32.7
Thhalv10005129m.g Eutrema salsugineum HOM05D001848 ORTHO05D001295 3.1e-08 62.0 100 39.0
QL09p046203 Quercus lobata HOM05D001848 ORTHO05D001295 3.1e-08 62.0 97 36.1
Atru.chr5.2942 Acer truncatum HOM05D001848 ORTHO05D001295 4.0e-08 61.6 99 39.4
arahy.Tifrunner.gnm1.ann1.0X4CPT Arachis hypogaea HOM05D001848 ORTHO05D001295 4.0e-08 61.6 87 39.1
arahy.Tifrunner.gnm1.ann1.IET74Z Arachis hypogaea HOM05D001848 ORTHO05D001295 4.0e-08 61.6 85 38.8
Ciclev10022967m.g Citrus clementina HOM05D001848 ORTHO05D001295 4.0e-08 61.6 72 50.0
Ciclev10029642m.g Citrus clementina HOM05D001848 ORTHO05D001295 4.0e-08 61.6 101 36.6
Cc04_g01540 Coffea canephora HOM05D001848 ORTHO05D001295 4.0e-08 61.6 91 39.6
Dinv44234 Davidia involucrata HOM05D000090 ORTHO05D001584 4.0e-08 61.6 72 47.2
Manes.11G113800 Manihot esculenta HOM05D001848 ORTHO05D001295 4.0e-08 61.6 92 42.4
Sabra14G0113300 Salix brachista HOM05D001848 ORTHO05D001295 4.0e-08 61.6 109 39.4
Sc17g0001730 Simmondsia chinensis HOM05D001848 ORTHO05D001295 4.0e-08 61.6 104 34.6
MSTRG.27708 Avicennia marina HOM05D001848 ORTHO05D001295 5.2e-08 61.2 97 41.2
Sc17g0001780 Simmondsia chinensis HOM05D001848 ORTHO05D001295 5.2e-08 61.2 104 37.5
FvH4_4g11910 Fragaria vesca HOM05D001848 ORTHO05D001295 6.8e-08 60.8 102 39.2
FAN12G2359 Fragaria x ananassa HOM05D001848 ORTHO05D001295 6.8e-08 60.8 102 39.2
FAN17G1858 Fragaria x ananassa HOM05D001848 ORTHO05D001295 6.8e-08 60.8 102 37.3
Rhsim12G0036400 Rhododendron simsii HOM05D001848 ORTHO05D001295 6.8e-08 60.8 100 33.0
Sc17g0001760 Simmondsia chinensis HOM05D001848 ORTHO05D001295 6.8e-08 60.8 106 37.7
Sopen01g028530 Solanum pennellii HOM05D001848 ORTHO05D001295 6.8e-08 60.8 95 40.0
Carub.0008s0807 Capsella rubella HOM05D001848 ORTHO05D001295 8.9e-08 60.5 95 37.9
FAN07G0789 Fragaria x ananassa HOM05D001848 ORTHO05D001295 8.9e-08 60.5 102 39.2
Prupe.8G102700 Prunus persica HOM05D001848 ORTHO05D001295 8.9e-08 60.5 107 38.3
Prupe.8G103000 Prunus persica HOM05D001848 ORTHO05D001295 8.9e-08 60.5 96 41.7
Nitab4.5_0005076g0020 Nicotiana tabacum HOM05D001848 ORTHO05D001295 1.2e-07 60.1 90 36.7
Psat0s3819g0040 Pisum sativum HOM05D001848 ORTHO05D001295 1.2e-07 60.1 98 36.7
Sed0004601 Sechium edule HOM05D001848 ORTHO05D001295 1.2e-07 60.1 92 38.0
Zm00001eb305200 Zea mays HOM05D001848 ORTHO05D001295 1.2e-07 60.1 99 37.4
CAN.G862.20 Capsicum annuum HOM05D001848 ORTHO05D001295 1.5e-07 59.7 99 40.4
Ca_20849_v3 Cicer arietinum L. HOM05D001848 ORTHO05D001295 1.5e-07 59.7 100 35.0
MELO3C012724.2 Cucumis melo HOM05D001848 ORTHO05D001295 1.5e-07 59.7 102 33.3
FAN22G1308 Fragaria x ananassa HOM05D001848 ORTHO05D001295 2.0e-07 59.3 93 38.7
Nn1g08245 Nelumbo nucifera HOM05D001848 ORTHO05D001295 2.0e-07 59.3 79 46.8
COL.COLO4_32457 Corchorus olitorius HOM05D001848 ORTHO05D001295 2.6e-07 58.9 100 37.0
DCAR_021418 Daucus carota HOM05D001848 ORTHO05D001295 2.6e-07 58.9 97 38.1
DCAR_029929 Daucus carota HOM05D001848 ORTHO05D001295 2.6e-07 58.9 91 36.3
Hma1.2p1_0161F.1_g071380 Hydrangea macrophylla HOM05D001848 ORTHO05D001295 2.6e-07 58.9 80 40.0
Os07g0287400 Oryza sativa ssp. japonica HOM05D001848 ORTHO05D001295 2.6e-07 58.9 81 44.4
RcHm_v2.0_Chr4g0409461 Rosa chinensis HOM05D001848 ORTHO05D001295 2.6e-07 58.9 102 35.3
TPR.G26815 Trifolium pratense HOM05D001848 ORTHO05D001295 2.6e-07 58.9 102 37.3
Ca_07467_v3 Cicer arietinum L. HOM05D001848 ORTHO05D001295 3.4e-07 58.5 92 39.1
FAN07G2298 Fragaria x ananassa HOM05D001848 ORTHO05D001295 3.4e-07 58.5 102 34.3
Sc17g0001770 Simmondsia chinensis HOM05D001848 ORTHO05D001295 3.4e-07 58.5 104 36.5
MBI07_g42482_MAGBIO Magnolia biondii HOM05D001848 ORTHO05D001295 4.4e-07 58.2 91 37.4
Lalb_Chr03g0041101 Lupinus albus HOM05D001848 ORTHO05D001295 5.8e-07 57.8 91 34.1
Medtr4g069220 Medicago truncatula HOM05D001848 ORTHO05D001295 5.8e-07 57.8 91 37.4
Psat7g184920 Pisum sativum HOM05D001848 ORTHO05D001295 7.5e-07 57.4 95 37.9
Rhsim01G0248600 Rhododendron simsii HOM05D001848 ORTHO05D001295 7.5e-07 57.4 96 37.5
TPR.G28533 Trifolium pratense HOM05D001848 ORTHO05D001295 7.5e-07 57.4 102 33.3
HPP92_013640 Vanilla planifolia HOM05D001848 ORTHO05D001295 7.5e-07 57.4 97 37.1
Migut.D00947 Erythranthe guttata HOM05D001848 ORTHO05D001295 9.8e-07 57.0 72 45.8
Eucgr.H00727 Eucalyptus grandis HOM05D001848 ORTHO05D001295 9.8e-07 57.0 78 42.3
Medtr7g052640 Medicago truncatula HOM05D001848 ORTHO05D001295 9.8e-07 57.0 92 35.9
Psat7g184880 Pisum sativum HOM05D001848 ORTHO05D001295 9.8e-07 57.0 98 34.7
QL10p044006 Quercus lobata HOM05D001848 ORTHO05D001295 9.8e-07 57.0 100 33.0
Thecc.02G122200 Theobroma cacao HOM05D001848 ORTHO05D001295 9.8e-07 57.0 104 35.6
CiPaw.01G107800 Carya illinoinensis HOM05D001848 ORTHO05D001295 1.3e-06 56.6 74 39.2
COL.COLO4_00060 Corchorus olitorius HOM05D001848 ORTHO05D001295 1.3e-06 56.6 86 38.4
Duzib268G0398 Durio zibethinus HOM05D001848 ORTHO05D001295 1.3e-06 56.6 96 36.5
Gohir.A10G139400 Gossypium hirsutum HOM05D001848 ORTHO05D001295 1.3e-06 56.6 91 39.6
Gohir.D10G127500 Gossypium hirsutum HOM05D001848 ORTHO05D001295 1.3e-06 56.6 91 39.6
Gorai.011G140600 Gossypium raimondii HOM05D001848 ORTHO05D001295 1.3e-06 56.6 91 39.6
VMungo1127G0744 Vigna mungo HOM05D001848 ORTHO05D001295 1.3e-06 56.6 97 35.1
FAN22G1115 Fragaria x ananassa HOM05D001848 ORTHO05D001295 1.7e-06 56.2 102 33.3
Glyma.12G045500 Glycine max HOM05D001848 ORTHO05D001295 1.7e-06 56.2 93 33.3
Peaxi162Scf00038g01729 Petunia axillaris HOM05D001848 ORTHO05D001295 1.7e-06 56.2 82 40.2
Psat7g184840 Pisum sativum HOM05D001848 ORTHO05D001295 1.7e-06 56.2 88 36.4
PGSC0003DMG400011323 Solanum tuberosum HOM05D001848 ORTHO05D001295 1.7e-06 56.2 91 37.4
ATR0686G063 Amborella trichopoda HOM05D001848 ORTHO05D001295 2.2e-06 55.8 91 37.4
COL.COLO4_03478 Corchorus olitorius HOM05D001848 ORTHO05D001295 2.2e-06 55.8 86 37.2
Gohir.A10G139300 Gossypium hirsutum HOM05D001848 ORTHO05D001295 2.2e-06 55.8 91 39.6
Gohir.D13G046900 Gossypium hirsutum HOM05D001848 ORTHO05D001295 2.2e-06 55.8 105 37.1
Sabra02G0190900 Salix brachista HOM05D001848 ORTHO05D001295 2.2e-06 55.8 98 37.8
Sed0003974 Sechium edule HOM05D001848 ORTHO05D001295 2.2e-06 55.8 93 36.6
COL.COLO4_10078 Corchorus olitorius HOM05D001848 ORTHO05D001295 2.9e-06 55.5 91 38.5
FvH4_4g11920 Fragaria vesca HOM05D001848 ORTHO05D001295 2.9e-06 55.5 102 32.4
FAN12G1139 Fragaria x ananassa HOM05D001848 ORTHO05D001295 2.9e-06 55.5 102 32.4
FAN12G1690 Fragaria x ananassa HOM05D001848 ORTHO05D001295 2.9e-06 55.5 102 32.4
Gorai.011G140500 Gossypium raimondii HOM05D001848 ORTHO05D001295 2.9e-06 55.5 91 39.6
Thecc.04G175600 Theobroma cacao HOM05D001848 ORTHO05D001295 2.9e-06 55.5 87 35.6
COL.COLO4_38462 Corchorus olitorius HOM05D001848 ORTHO05D001295 3.7e-06 55.1 97 35.1
ECA234G1211 Erigeron canadensis HOM05D001030 ORTHO05D003090 3.7e-06 55.1 95 37.9
Oeu014325.1 Olea europaea HOM05D001848 ORTHO05D001295 3.7e-06 55.1 98 39.8
Prupe.1G179900 Prunus persica HOM05D001848 ORTHO05D001295 3.7e-06 55.1 99 34.3
Glyma.11G120400 Glycine max HOM05D001848 ORTHO05D001295 4.9e-06 54.7 94 34.0
Potri.002G251000 Populus trichocarpa HOM05D001848 ORTHO05D001295 4.9e-06 54.7 94 37.2
PGR083G0807 Punica granatum HOM05D001848 ORTHO05D001295 4.9e-06 54.7 97 34.0
Medtr4g069200 Medicago truncatula HOM05D001848 ORTHO05D001295 6.4e-06 54.3 101 28.7
Peaxi162Scf00534g00001 Petunia axillaris HOM05D001848 ORTHO05D001295 6.4e-06 54.3 76 42.1
SalBow7G0169 Salvia bowleyana HOM05D001848 ORTHO05D001295 6.4e-06 54.3 63 49.2
arahy.Tifrunner.gnm1.ann1.E6CSJF Arachis hypogaea HOM05D001848 ORTHO05D001295 8.3e-06 53.9 100 33.0
arahy.Tifrunner.gnm1.ann1.PJ92NG Arachis hypogaea HOM05D001848 ORTHO05D001295 8.3e-06 53.9 100 34.0
Solyc07g065110.1 Solanum lycopersicum HOM05D001848 ORTHO05D001295 8.3e-06 53.9 88 36.4
PGSC0003DMG400022295 Solanum tuberosum HOM05D001848 ORTHO05D001295 8.3e-06 53.9 85 36.5


User provided reference genes

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