Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 9.8e-68 260.0 131 100.0
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 4.6e-41 171.4 114 79.8
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 1.5e-31 139.8 181 49.7
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 5.6e-31 137.9 181 49.7
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 3.6e-30 135.2 181 48.6
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 3.6e-30 135.2 181 48.6
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 3.6e-30 135.2 181 48.6
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 6.2e-30 134.4 181 48.6
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 6.2e-30 134.4 181 48.6
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 6.2e-30 134.4 181 48.6
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 6.2e-30 134.4 181 48.6
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 8.1e-30 134.0 181 48.6
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 1.8e-29 132.9 181 48.1
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 1.8e-29 132.9 181 48.1
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 1.8e-29 132.9 181 48.1
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 2.4e-29 132.5 181 47.5
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 2.4e-29 132.5 181 48.1
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 5.3e-29 131.3 181 47.5
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 9.0e-29 130.6 181 47.5
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 2.0e-28 129.4 157 52.2
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 5.5e-26 121.3 181 44.2
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 5.5e-26 121.3 181 44.2
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 5.5e-26 121.3 181 44.8
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 7.1e-26 120.9 181 45.3
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 1.2e-25 120.2 180 43.9
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 1.2e-25 120.2 184 43.5
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 1.2e-25 120.2 184 43.5
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 1.2e-25 120.2 184 43.5
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 2.1e-25 119.4 181 43.6
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 2.7e-25 119.0 184 44.0
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 2.7e-25 119.0 184 43.5
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 2.7e-25 119.0 184 44.0
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 4.6e-25 118.2 181 43.1
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 6.0e-25 117.9 184 42.9
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 7.9e-25 117.5 181 43.6
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 7.9e-25 117.5 184 42.9
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 1.0e-24 117.1 184 43.5
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 1.0e-24 117.1 184 44.0
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 1.3e-24 116.7 184 42.4
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.3e-24 116.7 184 42.4
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.3e-24 116.7 184 42.4
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 2.3e-24 115.9 184 45.1
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 5.1e-24 114.8 184 42.4
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 5.1e-24 114.8 184 42.9
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 5.1e-24 114.8 184 41.8
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 8.7e-24 114.0 183 42.1
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 1.1e-23 113.6 183 41.5
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 1.1e-23 113.6 181 40.9
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 1.1e-23 113.6 184 41.8
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 1.5e-23 113.2 183 41.0
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 1.9e-23 112.8 184 42.4
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 2.5e-23 112.5 184 41.8
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 2.5e-23 112.5 181 40.9
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 3.3e-23 112.1 184 41.3
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 3.3e-23 112.1 184 41.8
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 3.3e-23 112.1 184 41.8
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 4.3e-23 111.7 184 41.3
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 5.6e-23 111.3 184 41.3
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 5.6e-23 111.3 184 41.3
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 5.6e-23 111.3 184 41.8
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 5.6e-23 111.3 184 41.8
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 7.4e-23 110.9 184 40.8
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 9.6e-23 110.5 184 40.8
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 9.6e-23 110.5 184 40.2
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 9.6e-23 110.5 183 40.4
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 9.6e-23 110.5 181 41.4
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 1.3e-22 110.2 184 40.8
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 1.3e-22 110.2 184 41.3
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 1.6e-22 109.8 184 40.8
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 1.6e-22 109.8 184 41.3
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 1.6e-22 109.8 184 40.8
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 2.1e-22 109.4 184 40.2
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 2.1e-22 109.4 184 41.3
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 2.1e-22 109.4 184 40.8
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 2.8e-22 109.0 184 40.2
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 2.8e-22 109.0 183 40.4
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 3.7e-22 108.6 184 39.7
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 4.8e-22 108.2 184 40.2
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 4.8e-22 108.2 184 39.7
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 6.2e-22 107.8 184 40.2
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 8.1e-22 107.5 184 40.2
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 1.4e-21 106.7 184 39.1
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 1.4e-21 106.7 184 40.2
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 1.4e-21 106.7 184 40.2
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 1.4e-21 106.7 184 41.8
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 1.4e-21 106.7 184 39.1
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 1.8e-21 106.3 184 40.2
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 1.8e-21 106.3 184 40.2
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 1.8e-21 106.3 184 40.2
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 1.8e-21 106.3 184 39.1
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 2.4e-21 105.9 184 39.7
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 2.4e-21 105.9 184 39.7
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 2.4e-21 105.9 184 39.1
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 2.4e-21 105.9 184 39.1
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 3.1e-21 105.5 184 39.7
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 3.1e-21 105.5 184 39.7
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 3.1e-21 105.5 184 40.2
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 3.1e-21 105.5 184 39.1
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 4.0e-21 105.1 184 39.7
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 4.0e-21 105.1 184 39.1
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 5.3e-21 104.8 183 38.8
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 6.9e-21 104.4 184 39.7
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 6.9e-21 104.4 184 40.2
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 9.0e-21 104.0 184 38.6
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 9.0e-21 104.0 184 40.2
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 9.0e-21 104.0 181 39.8
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 9.0e-21 104.0 181 39.8
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 9.0e-21 104.0 189 39.7
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 1.2e-20 103.6 184 37.0
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 1.2e-20 103.6 184 38.6
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 1.5e-20 103.2 184 39.1
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 1.5e-20 103.2 184 38.6
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.5e-20 103.2 184 38.0
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 2.0e-20 102.8 184 38.6
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 2.0e-20 102.8 185 37.8
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 2.6e-20 102.4 183 39.3
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 2.6e-20 102.4 184 38.0
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 2.6e-20 102.4 184 38.0
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 2.6e-20 102.4 181 39.8
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.6e-20 102.4 184 37.5
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 2.6e-20 102.4 185 37.8
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 2.6e-20 102.4 184 38.6
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 5.8e-20 101.3 184 38.0
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 7.6e-20 100.9 183 39.3
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 7.6e-20 100.9 184 38.0
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 7.6e-20 100.9 184 38.0
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 1.3e-19 100.1 184 38.0
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 1.7e-19 99.8 184 38.0
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 2.2e-19 99.4 185 36.2
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 2.9e-19 99.0 160 44.4
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 3.8e-19 98.6 184 37.5
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 8.4e-19 97.4 173 39.3
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 8.4e-19 97.4 184 35.9
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 1.1e-18 97.1 184 34.8
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 1.1e-18 97.1 184 34.8
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 1.1e-18 97.1 184 34.8
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 1.4e-18 96.7 187 38.0
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 3.2e-18 95.5 187 35.8
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 3.2e-18 95.5 187 37.4
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 7.1e-18 94.4 184 37.5
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 9.3e-18 94.0 184 37.0
C03p50670 Brassica napus HOM05D003778 ORTHO05D004418 2.1e-17 92.8 48 95.8
C03p50690 Brassica napus HOM05D003778 ORTHO05D004418 2.1e-17 92.8 48 95.8
BolC3t17356H Brassica oleracea HOM05D003778 ORTHO05D004418 2.1e-17 92.8 48 95.8
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 3.9e-16 88.6 187 33.7
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 7.4e-15 84.3 187 34.2
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 2.1e-14 82.8 43 97.7
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 2.1e-14 82.8 43 97.7
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 2.4e-13 79.3 43 95.3
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 2.4e-13 79.3 43 95.3
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 3.1e-13 79.0 190 33.7
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 1.2e-12 77.0 185 34.6
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 1.4e-10 70.1 62 54.8
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 3.5e-09 65.5 60 60.0
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 4.6e-09 65.1 183 29.5
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 7.9e-09 64.3 52 69.2
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 7.9e-09 64.3 52 69.2
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 6.7e-08 61.2 183 26.2
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 8.7e-08 60.8 31 90.3
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 1.9e-07 59.7 52 63.5
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 2.8e-06 55.8 37 67.6
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 6.3e-06 54.7 177 26.6
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 8.2e-06 54.3 52 61.5


User provided reference genes

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