Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03534 Brassica carinata HOM05D003595 ORTHO05D004132 2.5e-69 265.4 138 100.0
BolC3t17422H Brassica oleracea HOM05D003595 ORTHO05D004132 2.7e-68 261.9 138 98.6
C03p51360 Brassica napus HOM05D003595 ORTHO05D004132 1.8e-67 259.2 138 97.8
A03p41960 Brassica napus HOM05D003595 ORTHO05D004132 4.8e-65 251.1 138 94.2
BraA03t13349Z Brassica rapa HOM05D003595 ORTHO05D004132 8.2e-65 250.4 138 93.5
BcaB06g26165 Brassica carinata HOM05D003595 ORTHO05D004132 2.7e-52 208.8 137 81.8
BcaC05g28203 Brassica carinata HOM05D003595 ORTHO05D004132 2.7e-52 208.8 137 81.8
C05p43150 Brassica napus HOM05D003595 ORTHO05D004132 2.7e-52 208.8 137 81.8
BolC5t33045H Brassica oleracea HOM05D003595 ORTHO05D004132 2.7e-52 208.8 137 81.8
A05p27810 Brassica napus HOM05D003595 ORTHO05D004132 2.0e-50 202.6 137 80.3
BraA05t21668Z Brassica rapa HOM05D003595 ORTHO05D004132 1.8e-48 196.1 137 77.4
BcaB06g26163 Brassica carinata HOM05D003595 ORTHO05D004132 7.7e-47 190.7 137 77.4
BcaB04g20620 Brassica carinata HOM05D003595 ORTHO05D004132 3.8e-38 161.8 141 70.2
A01p33890 Brassica napus HOM05D003595 ORTHO05D004132 1.5e-37 159.8 140 65.7
BraA01t03497Z Brassica rapa HOM05D003595 ORTHO05D004132 2.5e-37 159.1 140 65.7
Sp3g18930 Schrenkiella parvula HOM05D003595 ORTHO05D004132 2.5e-37 159.1 139 66.2
C01p43270 Brassica napus HOM05D003595 ORTHO05D004132 4.7e-36 154.8 140 64.3
Thhalv10022277m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 8.0e-36 154.1 140 64.3
BolC1t04289H Brassica oleracea HOM05D003595 ORTHO05D004132 1.4e-35 153.3 140 64.3
AL3G34860 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 3.0e-35 152.1 138 63.8
CARHR096780 Cardamine hirsuta HOM05D003595 ORTHO05D004132 9.8e-34 147.1 137 62.8
AT3G20898 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 3.7e-33 145.2 138 63.0
THA.LOC104817909 Tarenaya hassleriana HOM05D003595 ORTHO05D004132 2.0e-23 112.8 135 54.1
Carub.0003s2088 Capsella rubella HOM05D003595 ORTHO05D004132 8.0e-20 100.9 137 49.6
Aa31LG8G7720 Aethionema arabicum HOM05D003595 ORTHO05D004132 1.5e-18 96.7 138 52.2
AL1G59180 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 1.5e-18 96.7 136 46.3
Thhalv10011876m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 8.3e-17 90.9 53 75.5
Carub.0001s4023 Capsella rubella HOM05D003595 ORTHO05D004132 1.9e-16 89.7 53 73.6
Manes.14G003000 Manihot esculenta HOM05D003595 ORTHO05D004132 2.4e-16 89.4 122 45.9
A06p02550 Brassica napus HOM05D003595 ORTHO05D004132 4.1e-16 88.6 53 75.5
BraA06t23462Z Brassica rapa HOM05D003595 ORTHO05D004132 4.1e-16 88.6 53 75.5
A05p19650 Brassica napus HOM05D003595 ORTHO05D004132 1.2e-15 87.0 118 44.9
BraA05t20870Z Brassica rapa HOM05D003595 ORTHO05D004132 1.2e-15 87.0 118 45.8
BraA05t20871Z Brassica rapa HOM05D003595 ORTHO05D004132 1.2e-15 87.0 118 45.8
BcaC08g43305 Brassica carinata HOM05D003595 ORTHO05D004132 2.0e-15 86.3 53 73.6
C06p06520 Brassica napus HOM05D003595 ORTHO05D004132 2.0e-15 86.3 53 73.6
BolC6t35764H Brassica oleracea HOM05D003595 ORTHO05D004132 2.0e-15 86.3 53 73.6
BcaC05g27345 Brassica carinata HOM05D003595 ORTHO05D004132 2.7e-15 85.9 118 44.1
C05p32690 Brassica napus HOM05D003595 ORTHO05D004132 2.7e-15 85.9 118 44.1
BolC5t32002H Brassica oleracea HOM05D003595 ORTHO05D004132 2.7e-15 85.9 118 44.1
BcaB07g33584 Brassica carinata HOM05D003595 ORTHO05D004132 4.6e-15 85.1 53 69.8
QL01p004672 Quercus lobata HOM05D003595 ORTHO05D004132 7.8e-15 84.3 124 46.8
CARHR041430 Cardamine hirsuta HOM05D003595 ORTHO05D004132 3.9e-14 82.0 48 75.0
Sed0003787 Sechium edule HOM05D003595 ORTHO05D004132 1.5e-13 80.1 82 52.4
Haze_23141 Corylus avellana HOM05D003595 ORTHO05D004132 1.9e-13 79.7 136 40.4
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 1.9e-13 79.7 78 52.6
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 2.5e-13 79.3 59 62.7
AT1G51355 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 3.3e-13 79.0 117 44.4
BcaB04g17226 Brassica carinata HOM05D003595 ORTHO05D004132 3.3e-13 79.0 103 47.6
CSS0047718 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 3.3e-13 79.0 59 64.4
FvH4_3g28800 Fragaria vesca HOM05D003595 ORTHO05D004132 3.3e-13 79.0 52 67.3
FAN16G0889 Fragaria x ananassa HOM05D003595 ORTHO05D004132 3.3e-13 79.0 52 67.3
FAN21G3881 Fragaria x ananassa HOM05D003595 ORTHO05D004132 3.3e-13 79.0 52 67.3
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 4.3e-13 78.6 125 40.0
Nn7g36211 Nelumbo nucifera HOM05D003595 ORTHO05D004132 4.3e-13 78.6 138 37.7
Manes.06G164000 Manihot esculenta HOM05D003595 ORTHO05D004132 5.6e-13 78.2 132 37.9
Eucgr.B03689 Eucalyptus grandis HOM05D003595 ORTHO05D004132 9.5e-13 77.4 134 46.3
Sed0023013 Sechium edule HOM05D003595 ORTHO05D004132 9.5e-13 77.4 57 63.2
MD11G1192700 Malus domestica HOM05D003595 ORTHO05D004132 1.2e-12 77.0 132 41.7
Actinidia06343 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.6e-12 76.6 129 41.1
ClCG02G023190 Citrullus lanatus HOM05D003595 ORTHO05D004132 1.6e-12 76.6 53 66.0
FAN11G1213 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.6e-12 76.6 52 65.4
Potri.001G257700 Populus trichocarpa HOM05D003595 ORTHO05D004132 3.6e-12 75.5 135 39.3
Cfa009775 Carpinus fangiana HOM05D003595 ORTHO05D004132 4.7e-12 75.1 131 41.2
CiPaw.14G118800 Carya illinoinensis HOM05D003595 ORTHO05D004132 4.7e-12 75.1 132 40.2
Dinv18068 Davidia involucrata HOM05D003595 ORTHO05D004132 4.7e-12 75.1 51 66.7
Lsat_1_v5_gn_6_48040 Lactuca sativa HOM05D003595 ORTHO05D004132 4.7e-12 75.1 76 55.3
Prupe.4G249800 Prunus persica HOM05D003595 ORTHO05D004132 4.7e-12 75.1 130 38.5
Potri.016G053900 Populus trichocarpa HOM05D003595 ORTHO05D004132 8.1e-12 74.3 87 48.3
PGR102G2999 Punica granatum HOM05D003595 ORTHO05D004132 8.1e-12 74.3 86 52.3
Sabra16G0157600 Salix brachista HOM05D003595 ORTHO05D004132 8.1e-12 74.3 140 39.3
Lj6g0013857 Lotus japonicus HOM05D003595 ORTHO05D004132 1.1e-11 73.9 54 63.0
Glyma.18G070800 Glycine max HOM05D003595 ORTHO05D004132 2.3e-11 72.8 52 65.4
HanXRQChr02g0056211 Helianthus annuus HOM05D003595 ORTHO05D004132 2.3e-11 72.8 61 60.7
TWI32G0089 Tripterygium wilfordii HOM05D003595 ORTHO05D004132 2.3e-11 72.8 55 67.3
BcaB04g19133 Brassica carinata HOM05D003595 ORTHO05D004132 3.1e-11 72.4 44 86.4
Rhsim01G0191900 Rhododendron simsii HOM05D003595 ORTHO05D004132 3.1e-11 72.4 164 36.0
Sabra16G0057000 Salix brachista HOM05D003595 ORTHO05D004132 3.1e-11 72.4 84 46.4
Phvul.008G283300 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 4.0e-11 72.0 52 59.6
SGA_v2.0_scaffold42G16100 Striga asiatica HOM05D003595 ORTHO05D004132 4.0e-11 72.0 52 63.5
TPR.G30109 Trifolium pratense HOM05D003595 ORTHO05D004132 4.0e-11 72.0 50 64.0
Atru.chr3.2713 Acer truncatum HOM05D003595 ORTHO05D004132 5.2e-11 71.6 105 45.7
MSTRG.18428 Avicennia marina HOM05D003595 ORTHO05D004132 5.2e-11 71.6 114 42.1
CSS0046994 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 6.8e-11 71.2 133 39.1
MBI04_g36072_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 6.8e-11 71.2 74 45.9
arahy.Tifrunner.gnm1.ann1.ST54C5 Arachis hypogaea HOM05D003595 ORTHO05D004132 8.9e-11 70.9 52 63.5
CiPaw.13G160700 Carya illinoinensis HOM05D003595 ORTHO05D004132 1.2e-10 70.5 135 40.7
TAR633G0913 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.2e-10 70.5 114 39.5
RcHm_v2.0_Chr5g0052211 Rosa chinensis HOM05D003595 ORTHO05D004132 1.5e-10 70.1 124 41.1
TAR623G0789 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.5e-10 70.1 93 44.1
Phvul.006G062400 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 2.0e-10 69.7 89 48.3
TAR623G1528 Trochodendron aralioides HOM05D003595 ORTHO05D004132 2.0e-10 69.7 93 44.1
VMungo0540G1156 Vigna mungo HOM05D003595 ORTHO05D004132 2.0e-10 69.7 89 48.3
Sabra06G0038000 Salix brachista HOM05D003595 ORTHO05D004132 2.6e-10 69.3 74 48.6
Thecc.09G234200 Theobroma cacao HOM05D003595 ORTHO05D004132 2.6e-10 69.3 130 37.7
ClCG03G013230 Citrullus lanatus HOM05D003595 ORTHO05D004132 3.4e-10 68.9 50 64.0
Migut.N02319 Erythranthe guttata HOM05D003595 ORTHO05D004132 3.4e-10 68.9 49 61.2
LjContig00081g0018996 Lotus japonicus HOM05D003595 ORTHO05D004132 3.4e-10 68.9 49 63.3
Cfa016846 Carpinus fangiana HOM05D003595 ORTHO05D004132 4.4e-10 68.6 56 62.5
MD03G1174700 Malus domestica HOM05D003595 ORTHO05D004132 4.4e-10 68.6 134 42.5
Phvul.001G135700 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 4.4e-10 68.6 106 40.6
Actinidia09350 Actinidia chinensis HOM05D003595 ORTHO05D004132 5.8e-10 68.2 53 56.6
Gohir.D09G110700 Gossypium hirsutum HOM05D003595 ORTHO05D004132 5.8e-10 68.2 126 37.3
Oeu025870.1 Olea europaea HOM05D003595 ORTHO05D004132 5.8e-10 68.2 130 36.2
Phvul.007G253900 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 5.8e-10 68.2 49 57.1
Glyma.08G335700 Glycine max HOM05D003595 ORTHO05D004132 7.5e-10 67.8 89 48.3
MSTRG.21376 Avicennia marina HOM05D003595 ORTHO05D004132 9.8e-10 67.4 133 35.3
CSS0007298 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 9.8e-10 67.4 131 38.2
Glyma.19G141300 Glycine max HOM05D003595 ORTHO05D004132 9.8e-10 67.4 102 44.1
Gohir.A09G114100 Gossypium hirsutum HOM05D003595 ORTHO05D004132 9.8e-10 67.4 126 37.3
Potri.006G053600 Populus trichocarpa HOM05D003595 ORTHO05D004132 9.8e-10 67.4 53 56.6
CANSAT54G2715 Cannabis sativa HOM05D003595 ORTHO05D004132 1.3e-09 67.0 86 43.0
Ca_14877_v3 Cicer arietinum L. HOM05D003595 ORTHO05D004132 1.3e-09 67.0 116 41.4
Duzib168G1914 Durio zibethinus HOM05D003595 ORTHO05D004132 1.3e-09 67.0 126 41.3
Gorai.006G128400 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.3e-09 67.0 126 37.3
VMungo1383G3074 Vigna mungo HOM05D003595 ORTHO05D004132 1.3e-09 67.0 107 39.3
Actinidia23974 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.7e-09 66.6 127 37.8
Oeu063323.1 Olea europaea HOM05D003595 ORTHO05D004132 2.2e-09 66.2 128 37.5
Actinidia24526 Actinidia chinensis HOM05D003595 ORTHO05D004132 2.9e-09 65.9 53 56.6
Potri.009G053000 Populus trichocarpa HOM05D003595 ORTHO05D004132 2.9e-09 65.9 123 38.2
Aa31LG10G3530 Aethionema arabicum HOM05D003595 ORTHO05D004132 4.9e-09 65.1 42 69.0
FAN25G1008 Fragaria x ananassa HOM05D003595 ORTHO05D004132 6.4e-09 64.7 134 35.8
MBI02_g05660_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 6.4e-09 64.7 74 44.6
Manes.09G025100 Manihot esculenta HOM05D003595 ORTHO05D004132 6.4e-09 64.7 49 61.2
Medtr3g061570 Medicago truncatula HOM05D003595 ORTHO05D004132 6.4e-09 64.7 140 36.4
TAR636G3263 Trochodendron aralioides HOM05D003595 ORTHO05D004132 6.4e-09 64.7 120 38.3
BcaC01g01256 Brassica carinata HOM05D003595 ORTHO05D004132 8.3e-09 64.3 53 56.6
C03p89850 Brassica napus HOM05D003595 ORTHO05D004132 8.3e-09 64.3 53 56.6
BolC3t21307H Brassica oleracea HOM05D003595 ORTHO05D004132 8.3e-09 64.3 53 56.6
Lalb_Chr20g0110801 Lupinus albus HOM05D003595 ORTHO05D004132 8.3e-09 64.3 53 58.5
QL07p021139 Quercus lobata HOM05D003595 ORTHO05D004132 8.3e-09 64.3 52 61.5
Sp1g38020 Schrenkiella parvula HOM05D003595 ORTHO05D004132 8.3e-09 64.3 53 56.6
Sopen11g025480 Solanum pennellii HOM05D003595 ORTHO05D004132 8.3e-09 64.3 60 53.3
Cc00_g16730 Coffea canephora HOM05D003595 ORTHO05D004132 1.1e-08 63.9 127 40.2
Gohir.D07G127800 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.1e-08 63.9 66 53.0
Lalb_Chr04g0247411 Lupinus albus HOM05D003595 ORTHO05D004132 1.1e-08 63.9 51 54.9
Lalb_Chr04g0247651 Lupinus albus HOM05D003595 ORTHO05D004132 1.1e-08 63.9 51 54.9
Lalb_Chr15g0082551 Lupinus albus HOM05D003595 ORTHO05D004132 1.1e-08 63.9 51 58.8
VMungo0720G0045 Vigna mungo HOM05D003595 ORTHO05D004132 1.1e-08 63.9 56 50.0
GSVIVG01025255001 Vitis vinifera HOM05D003595 ORTHO05D004132 1.1e-08 63.9 132 35.6
AUR62019305 Chenopodium quinoa HOM05D003595 ORTHO05D004132 1.9e-08 63.2 55 54.5
Glyma.02G182300 Glycine max HOM05D003595 ORTHO05D004132 2.4e-08 62.8 57 57.9
Ciclev10006718m.g Citrus clementina HOM05D003595 ORTHO05D004132 3.2e-08 62.4 69 44.9
Nitab4.5_0002741g0180 Nicotiana tabacum HOM05D003595 ORTHO05D004132 3.2e-08 62.4 58 51.7
EL10Ac4g10246 Beta vulgaris HOM05D003595 ORTHO05D004132 4.1e-08 62.0 54 50.0
Glyma.03G138300 Glycine max HOM05D003595 ORTHO05D004132 4.1e-08 62.0 108 37.0
Thecc.05G160100 Theobroma cacao HOM05D003595 ORTHO05D004132 4.1e-08 62.0 99 41.4
Glyma.02G303900 Glycine max HOM05D003595 ORTHO05D004132 5.4e-08 61.6 48 58.3
TPR.G1275 Trifolium pratense HOM05D003595 ORTHO05D004132 5.4e-08 61.6 52 61.5
AUR62000124 Chenopodium quinoa HOM05D003595 ORTHO05D004132 9.2e-08 60.8 54 53.7
Gorai.001G138100 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.6e-07 60.1 66 51.5
Medtr1g052770 Medicago truncatula HOM05D003595 ORTHO05D004132 1.6e-07 60.1 56 53.6
PGSC0003DMG400007365 Solanum tuberosum HOM05D003595 ORTHO05D004132 1.6e-07 60.1 100 39.0
Lalb_Chr18g0050501 Lupinus albus HOM05D003595 ORTHO05D004132 2.1e-07 59.7 88 46.6
Cpa.g.sc84.51 Carica papaya HOM05D003595 ORTHO05D004132 2.7e-07 59.3 141 35.5
Medtr5g096855 Medicago truncatula HOM05D003595 ORTHO05D004132 2.7e-07 59.3 52 59.6
MELO3C015194.2 Cucumis melo HOM05D003595 ORTHO05D004132 3.5e-07 58.9 54 55.6
Eucgr.A02382 Eucalyptus grandis HOM05D003595 ORTHO05D004132 3.5e-07 58.9 55 56.4
Nn2g15359 Nelumbo nucifera HOM05D003595 ORTHO05D004132 3.5e-07 58.9 132 35.6
ATR0332G104 Amborella trichopoda HOM05D003595 ORTHO05D004132 4.6e-07 58.5 51 51.0
Ah.04g161940 Amaranthus hybridus HOM05D000545 ORTHO05D000539 7.8e-07 57.8 54 48.1
Gohir.A11G311600 Gossypium hirsutum HOM05D003595 ORTHO05D004132 7.8e-07 57.8 76 44.7
CiPaw.09G036200 Carya illinoinensis HOM05D003595 ORTHO05D004132 1.3e-06 57.0 105 39.0
Sed0006790 Sechium edule HOM05D003595 ORTHO05D004132 1.3e-06 57.0 135 34.1
Sc09g0000730 Simmondsia chinensis HOM05D003595 ORTHO05D004132 1.7e-06 56.6 62 45.2
MSTRG.17593 Avicennia marina HOM05D003595 ORTHO05D004132 2.3e-06 56.2 129 34.1
BcaB02g11234 Brassica carinata HOM05D003595 ORTHO05D004132 3.0e-06 55.8 136 35.3
CsaV3_1G042810 Cucumis sativus L. HOM05D003595 ORTHO05D004132 3.0e-06 55.8 52 55.8
Gohir.D11G328300 Gossypium hirsutum HOM05D003595 ORTHO05D004132 3.0e-06 55.8 76 44.7
Gorai.007G359500 Gossypium raimondii HOM05D003595 ORTHO05D004132 3.0e-06 55.8 76 44.7
Gorai.009G073400 Gossypium raimondii HOM05D003595 ORTHO05D004132 3.0e-06 55.8 132 38.6
Sed0028187 Sechium edule HOM05D003595 ORTHO05D004132 3.0e-06 55.8 75 44.0
Gohir.D05G072400 Gossypium hirsutum HOM05D003595 ORTHO05D004132 3.9e-06 55.5 132 38.6
Manes.07G063550 Manihot esculenta HOM05D003595 ORTHO05D004132 3.9e-06 55.5 46 54.3
SGA_v2.0_scaffold18G08279 Striga asiatica HOM05D002383 ORTHO05D002515 5.1e-06 55.1 56 46.4
MSTRG.3147 Avicennia marina HOM05D002383 ORTHO05D002515 6.6e-06 54.7 56 48.2
Migut.J01773 Erythranthe guttata HOM05D003595 ORTHO05D004132 6.6e-06 54.7 55 47.3
Gohir.A05G069500 Gossypium hirsutum HOM05D003595 ORTHO05D004132 8.6e-06 54.3 132 38.6
Sabra08G0019700 Salix brachista HOM05D005304 ORTHO05D004438 8.6e-06 54.3 60 46.7


User provided reference genes

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