Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03529 Brassica carinata HOM05D004210 ORTHO05D005017 2.2e-48 195.3 95 100.0
AL249U10010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 4.8e-16 87.8 98 53.1
AT3G21060 Arabidopsis thaliana HOM05D004210 ORTHO05D005017 1.4e-15 86.3 98 51.0
Thhalv10020461m.g Eutrema salsugineum HOM05D004210 ORTHO05D005017 3.1e-15 85.1 98 52.0
Aa31LG8G7780 Aethionema arabicum HOM05D004210 ORTHO05D005017 9.1e-15 83.6 98 51.0
BcaB04g20615 Brassica carinata HOM05D004210 ORTHO05D005017 9.1e-15 83.6 98 51.0
CARHR096890 Cardamine hirsuta HOM05D004210 ORTHO05D005017 1.2e-14 83.2 98 51.0
Carub.0003s2096 Capsella rubella HOM05D004210 ORTHO05D005017 2.0e-14 82.4 98 50.0
Sp3g19020 Schrenkiella parvula HOM05D004210 ORTHO05D005017 2.7e-14 82.0 98 50.0
A01p33790 Brassica napus HOM05D004210 ORTHO05D005017 5.9e-14 80.9 98 49.0
BraA01t03490Z Brassica rapa HOM05D004210 ORTHO05D005017 5.9e-14 80.9 98 49.0
AL3G35010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 8.6e-13 77.0 51 74.5
THA.LOC104804661 Tarenaya hassleriana HOM05D004210 ORTHO05D005017 4.7e-11 71.2 97 45.4
Sabra19G0006000 Salix brachista HOM05D004210 ORTHO05D005017 1.0e-10 70.1 98 42.9
Sabra19G0005800 Salix brachista HOM05D004210 ORTHO05D005017 1.8e-10 69.3 98 42.9
Sabra19G0013500 Salix brachista HOM05D004210 ORTHO05D005017 1.8e-10 69.3 98 42.9
Sabra19G0014200 Salix brachista HOM05D004210 ORTHO05D005017 1.8e-10 69.3 98 42.9
BcaC09g49045 Brassica carinata HOM05D004210 ORTHO05D005017 3.0e-10 68.6 98 45.9
C01p43210 Brassica napus HOM05D004210 ORTHO05D005017 3.0e-10 68.6 98 45.9
Haze_03415 Corylus avellana HOM05D004210 ORTHO05D005017 3.0e-10 68.6 109 42.2
Cpa.g.sc138.49 Carica papaya HOM05D004210 ORTHO05D005017 5.2e-10 67.8 98 42.9
Cc08_g06030 Coffea canephora HOM05D004210 ORTHO05D005017 6.8e-10 67.4 109 41.3
Sabra16G0191800 Salix brachista HOM05D004210 ORTHO05D005017 6.8e-10 67.4 98 42.9
BolC1t04267H Brassica oleracea HOM05D004210 ORTHO05D005017 8.8e-10 67.0 98 44.9
Lalb_Chr18g0049111 Lupinus albus HOM05D004210 ORTHO05D005017 8.8e-10 67.0 114 36.8
arahy.Tifrunner.gnm1.ann1.374KBL Arachis hypogaea HOM05D004210 ORTHO05D005017 1.5e-09 66.2 99 41.4
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea HOM05D004210 ORTHO05D005017 1.5e-09 66.2 99 41.4
arahy.Tifrunner.gnm1.ann1.A6SQAT Arachis hypogaea HOM05D004210 ORTHO05D005017 1.5e-09 66.2 99 41.4
MD02G1259400 Malus domestica HOM05D004210 ORTHO05D005017 1.5e-09 66.2 98 40.8
MD07G1061200 Malus domestica HOM05D004210 ORTHO05D005017 1.5e-09 66.2 98 41.8
Phvul.003G276000 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.5e-09 66.2 99 41.4
Atru.chr10.436 Acer truncatum HOM05D004210 ORTHO05D005017 2.6e-09 65.5 98 43.9
CiPaw.14G037100 Carya illinoinensis HOM05D004210 ORTHO05D005017 2.6e-09 65.5 109 41.3
Dinv04121 Davidia involucrata HOM05D004210 ORTHO05D005017 2.6e-09 65.5 109 40.4
Potri.019G000900 Populus trichocarpa HOM05D004210 ORTHO05D005017 2.6e-09 65.5 98 41.8
TAR381G0930 Trochodendron aralioides HOM05D004210 ORTHO05D005017 3.4e-09 65.1 109 39.4
CSS0018495 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 4.4e-09 64.7 108 41.7
Nitab4.5_0001611g0030 Nicotiana tabacum HOM05D004210 ORTHO05D005017 4.4e-09 64.7 98 40.8
Potri.001G305500 Populus trichocarpa HOM05D004210 ORTHO05D005017 4.4e-09 64.7 97 42.3
Sed0005167 Sechium edule HOM05D004210 ORTHO05D005017 4.4e-09 64.7 98 39.8
Nitab4.5_0004014g0070 Nicotiana tabacum HOM05D004210 ORTHO05D005017 5.7e-09 64.3 98 40.8
Manes.13G077346 Manihot esculenta HOM05D004210 ORTHO05D005017 7.5e-09 63.9 100 40.0
Manes.13G078700 Manihot esculenta HOM05D004210 ORTHO05D005017 7.5e-09 63.9 100 40.0
Solyc01g096950.4 Solanum lycopersicum HOM05D004210 ORTHO05D005017 7.5e-09 63.9 98 39.8
Sopen01g040660 Solanum pennellii HOM05D004210 ORTHO05D005017 7.5e-09 63.9 98 39.8
Actinidia18370 Actinidia chinensis HOM05D004210 ORTHO05D005017 1.3e-08 63.2 99 40.4
Medtr8g041740 Medicago truncatula HOM05D004210 ORTHO05D005017 1.3e-08 63.2 99 38.4
VMungo0251G3202 Vigna mungo HOM05D004210 ORTHO05D005017 1.3e-08 63.2 99 39.4
Ciclev10014800m.g Citrus clementina HOM05D004210 ORTHO05D005017 1.7e-08 62.8 98 40.8
Medtr8g045440 Medicago truncatula HOM05D004210 ORTHO05D005017 1.7e-08 62.8 99 38.4
Peaxi162Scf00647g00139 Petunia axillaris HOM05D004210 ORTHO05D005017 1.7e-08 62.8 98 38.8
Prupe.5G058900 Prunus persica HOM05D004210 ORTHO05D005017 1.7e-08 62.8 94 42.6
SGA_v2.0_scaffold196G40978 Striga asiatica HOM05D004210 ORTHO05D005017 2.2e-08 62.4 109 40.4
Lj3g0025560 Lotus japonicus HOM05D004210 ORTHO05D005017 2.8e-08 62.0 98 37.8
Psat4g180480 Pisum sativum HOM05D004210 ORTHO05D005017 2.8e-08 62.0 99 39.4
Sed0024731 Sechium edule HOM05D004210 ORTHO05D005017 2.8e-08 62.0 105 36.2
PGSC0003DMG400027522 Solanum tuberosum HOM05D004210 ORTHO05D005017 2.8e-08 62.0 98 38.8
MELO3C012312.2 Cucumis melo HOM05D004210 ORTHO05D005017 3.7e-08 61.6 98 38.8
CsaV3_5G035020 Cucumis sativus L. HOM05D004210 ORTHO05D005017 3.7e-08 61.6 98 38.8
Psat4g200760 Pisum sativum HOM05D004210 ORTHO05D005017 3.7e-08 61.6 99 37.4
QL04p049870 Quercus lobata HOM05D004210 ORTHO05D005017 3.7e-08 61.6 109 40.4
Ca_24147_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 6.3e-08 60.8 99 37.4
Lj8A287G21 Lonicera japonica HOM05D004210 ORTHO05D005017 6.3e-08 60.8 109 38.5
MSTRG.20468 Avicennia marina HOM05D004210 ORTHO05D005017 8.3e-08 60.5 109 39.4
ClCG05G022120 Citrullus lanatus HOM05D004210 ORTHO05D005017 8.3e-08 60.5 98 38.8
Oeu012473.1 Olea europaea HOM05D004210 ORTHO05D005017 1.1e-07 60.1 109 41.3
TPR.G14605 Trifolium pratense HOM05D004210 ORTHO05D005017 1.1e-07 60.1 99 37.4
CANSAT56G1750 Cannabis sativa HOM05D004210 ORTHO05D005017 1.4e-07 59.7 98 39.8
Ca_05576_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.8e-07 59.3 99 37.4
Glyma.08G229800 Glycine max HOM05D004210 ORTHO05D005017 1.8e-07 59.3 99 38.4
Lalb_Chr01g0007661 Lupinus albus HOM05D004210 ORTHO05D005017 1.8e-07 59.3 99 37.4
Nn5g30473 Nelumbo nucifera HOM05D004210 ORTHO05D005017 1.8e-07 59.3 109 36.7
PGR142G1915 Punica granatum HOM05D004210 ORTHO05D005017 1.8e-07 59.3 112 33.9
Glyma.05G087400 Glycine max HOM05D004210 ORTHO05D005017 2.4e-07 58.9 98 38.8
Glyma.06G315900 Glycine max HOM05D004210 ORTHO05D005017 2.4e-07 58.9 98 38.8
Phvul.008G161500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 3.1e-07 58.5 99 38.4
HPP92_001742 Vanilla planifolia HOM05D004210 ORTHO05D005017 3.1e-07 58.5 98 33.7
Aqoxy1G00569 Aquilegia oxysepala HOM05D004210 ORTHO05D005017 4.1e-07 58.2 109 34.9
TPR.G24022 Trifolium pratense HOM05D004210 ORTHO05D005017 4.1e-07 58.2 99 38.4
Migut.B01123 Erythranthe guttata HOM05D004210 ORTHO05D005017 7.0e-07 57.4 98 39.8
Medtr8g045463 Medicago truncatula HOM05D004210 ORTHO05D005017 7.0e-07 57.4 101 37.6
Medtr8g045470 Medicago truncatula HOM05D004210 ORTHO05D005017 7.0e-07 57.4 101 37.6
Thecc.10G122400 Theobroma cacao HOM05D004210 ORTHO05D005017 7.0e-07 57.4 98 39.8
TAR376G0596 Trochodendron aralioides HOM05D004210 ORTHO05D005017 7.0e-07 57.4 110 38.2
CDE04G1921 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 9.2e-07 57.0 108 34.3
Ca_24139_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 9.2e-07 57.0 66 45.5
Glyma.13G124200 Glycine max HOM05D004210 ORTHO05D005017 9.2e-07 57.0 98 37.8
ATR0661G188 Amborella trichopoda HOM05D004210 ORTHO05D005017 1.2e-06 56.6 93 37.6
Ca_13103_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.2e-06 56.6 66 45.5
PSO541G0139 Papaver somniferum HOM05D004210 ORTHO05D005017 1.2e-06 56.6 109 34.9
Glyma.04G129500 Glycine max HOM05D004210 ORTHO05D005017 1.6e-06 56.2 98 37.8
FvH4_2g10510 Fragaria vesca HOM05D004210 ORTHO05D005017 2.0e-06 55.8 98 40.8
FAN15G0031 Fragaria x ananassa HOM05D004210 ORTHO05D005017 2.0e-06 55.8 98 40.8
FAN20G0431 Fragaria x ananassa HOM05D004210 ORTHO05D005017 2.0e-06 55.8 98 40.8
FAN24G2713 Fragaria x ananassa HOM05D004210 ORTHO05D005017 2.0e-06 55.8 98 40.8
FAN27G0821 Fragaria x ananassa HOM05D004210 ORTHO05D005017 2.0e-06 55.8 98 40.8
RcHm_v2.0_Chr6g0268021 Rosa chinensis HOM05D004210 ORTHO05D005017 2.0e-06 55.8 100 39.0
TWI75G1118 Tripterygium wilfordii HOM05D004210 ORTHO05D005017 2.0e-06 55.8 97 39.2
TAR625G1450 Trochodendron aralioides HOM05D004210 ORTHO05D005017 2.0e-06 55.8 112 36.6
DCAR_002139 Daucus carota HOM05D004210 ORTHO05D005017 3.5e-06 55.1 109 35.8
Duzib114G0085 Durio zibethinus HOM05D004210 ORTHO05D005017 3.5e-06 55.1 98 38.8
PSO478G0462 Papaver somniferum HOM05D004210 ORTHO05D005017 3.5e-06 55.1 109 33.9
vmacro20845 Vaccinium macrocarpon HOM05D004210 ORTHO05D005017 3.5e-06 55.1 97 38.1
VMungo0647G0038 Vigna mungo HOM05D004210 ORTHO05D005017 3.5e-06 55.1 99 35.4
CDE07G1685 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 4.5e-06 54.7 97 33.0
Duzib106G1791 Durio zibethinus HOM05D004210 ORTHO05D005017 5.9e-06 54.3 98 38.8
Hma1.2p1_0892F.1_g233380 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 5.9e-06 54.3 111 38.7
Oeu027040.1 Olea europaea HOM05D004210 ORTHO05D005017 5.9e-06 54.3 98 38.8
Rhsim04G0193600 Rhododendron simsii HOM05D004210 ORTHO05D005017 7.8e-06 53.9 108 36.1


User provided reference genes

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