Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 6.8e-70 267.3 144 100.0
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 1.5e-69 266.2 144 99.3
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 4.4e-69 264.6 144 98.6
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 4.8e-68 261.2 145 98.6
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 1.4e-67 259.6 146 97.3
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 4.5e-66 254.6 142 94.4
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 1.8e-62 242.7 136 93.4
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 1.2e-61 240.0 143 88.1
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 2.0e-61 239.2 140 91.4
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 2.0e-61 239.2 140 91.4
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 2.0e-61 239.2 140 91.4
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 9.8e-61 236.9 139 89.2
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 9.8e-61 236.9 141 88.7
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 1.7e-60 236.1 141 89.4
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 6.3e-60 234.2 140 87.9
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 1.4e-59 233.0 141 87.9
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 5.9e-58 227.6 140 84.3
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 1.3e-57 226.5 140 88.6
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 1.3e-57 226.5 140 88.6
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 1.3e-57 226.5 140 84.3
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 3.6e-55 218.4 141 84.4
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 3.0e-54 215.3 141 83.0
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 3.7e-52 208.4 141 81.6
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 1.7e-49 199.5 140 73.6
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 1.7e-49 199.5 140 73.6
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 2.3e-49 199.1 143 74.1
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 3.0e-49 198.7 140 73.6
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 8.6e-49 197.2 140 74.3
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 8.6e-49 197.2 142 73.9
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 1.9e-48 196.1 139 72.7
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 4.3e-48 194.9 140 73.6
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 9.5e-48 193.7 143 70.6
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 9.5e-48 193.7 140 72.9
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 1.6e-47 193.0 140 72.9
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 2.1e-47 192.6 139 72.7
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 2.8e-47 192.2 137 73.7
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 2.8e-47 192.2 139 71.2
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 2.8e-47 192.2 140 70.7
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 2.8e-47 192.2 140 72.1
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 2.8e-47 192.2 138 72.5
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 3.6e-47 191.8 140 72.1
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 3.6e-47 191.8 140 72.1
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 3.6e-47 191.8 140 70.7
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 3.6e-47 191.8 140 70.7
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 4.7e-47 191.4 140 72.1
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 4.7e-47 191.4 138 71.7
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 6.2e-47 191.0 140 72.9
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 8.0e-47 190.7 141 70.9
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 1.4e-46 189.9 139 71.9
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 1.4e-46 189.9 139 71.9
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 1.4e-46 189.9 140 71.4
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 1.4e-46 189.9 140 72.1
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 3.1e-46 188.7 139 71.2
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 3.1e-46 188.7 143 67.8
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 4.0e-46 188.3 135 73.3
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 4.0e-46 188.3 143 69.2
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 4.0e-46 188.3 141 70.2
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 4.0e-46 188.3 144 70.1
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 4.0e-46 188.3 143 69.2
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 4.0e-46 188.3 143 68.5
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 5.2e-46 188.0 139 69.1
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 5.2e-46 188.0 139 71.2
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 6.8e-46 187.6 140 69.3
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 8.9e-46 187.2 135 71.1
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 1.2e-45 186.8 140 69.3
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 1.2e-45 186.8 140 69.3
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 1.2e-45 186.8 139 69.8
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 1.2e-45 186.8 138 69.6
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 1.2e-45 186.8 136 70.6
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 1.2e-45 186.8 139 69.8
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 1.5e-45 186.4 139 71.2
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 1.5e-45 186.4 142 67.6
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 2.0e-45 186.0 140 69.3
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 2.6e-45 185.7 138 69.6
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 2.6e-45 185.7 139 69.8
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 2.6e-45 185.7 139 69.8
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 2.6e-45 185.7 139 69.8
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 2.6e-45 185.7 137 69.3
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 2.6e-45 185.7 141 69.5
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 3.4e-45 185.3 140 67.1
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 3.4e-45 185.3 139 68.3
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 3.4e-45 185.3 139 69.1
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 3.4e-45 185.3 139 69.1
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 3.4e-45 185.3 140 67.9
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 3.4e-45 185.3 140 68.6
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 3.4e-45 185.3 137 69.3
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 4.4e-45 184.9 141 70.2
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 4.4e-45 184.9 139 69.8
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 4.4e-45 184.9 136 68.4
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 5.8e-45 184.5 138 68.1
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 7.5e-45 184.1 138 68.8
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 7.5e-45 184.1 136 68.4
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 9.8e-45 183.7 143 67.1
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 9.8e-45 183.7 142 69.7
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 1.3e-44 183.3 139 69.1
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 1.7e-44 183.0 140 67.1
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 1.7e-44 183.0 138 68.8
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 1.7e-44 183.0 136 68.4
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 1.7e-44 183.0 143 65.7
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 1.7e-44 183.0 136 69.9
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 2.9e-44 182.2 142 67.6
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 3.7e-44 181.8 139 68.3
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 3.7e-44 181.8 139 69.1
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 3.7e-44 181.8 139 68.3
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 3.7e-44 181.8 139 67.6
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 4.9e-44 181.4 139 69.1
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 4.9e-44 181.4 135 72.6
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 6.4e-44 181.0 139 67.6
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 6.4e-44 181.0 136 69.1
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 8.3e-44 180.6 140 67.9
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 1.1e-43 180.3 135 67.4
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 1.4e-43 179.9 136 69.1
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 1.9e-43 179.5 135 69.6
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 1.9e-43 179.5 136 68.4
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 2.4e-43 179.1 140 64.3
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 3.2e-43 178.7 138 67.4
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 4.1e-43 178.3 137 67.9
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 4.1e-43 178.3 140 66.4
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 4.1e-43 178.3 141 67.4
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 7.0e-43 177.6 135 66.7
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 2.1e-42 176.0 137 66.4
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 2.1e-42 176.0 141 65.2
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 2.7e-42 175.6 140 65.0
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 3.5e-42 175.3 137 66.4
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 3.5e-42 175.3 135 65.9
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 1.0e-41 173.7 125 72.8
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 1.6e-39 166.4 138 63.0
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 4.9e-36 154.8 118 66.1
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 6.4e-36 154.5 140 57.9
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 1.9e-35 152.9 139 56.1
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 4.1e-35 151.8 143 61.5
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 5.4e-35 151.4 132 61.4
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 3.5e-34 148.7 111 68.5
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 1.7e-33 146.4 138 53.6
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 3.6e-31 138.7 143 52.4
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 3.4e-29 132.1 131 54.2
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 4.4e-29 131.7 97 74.2
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 7.6e-29 131.0 134 56.0
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 4.9e-28 128.3 107 57.0
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 1.6e-23 113.2 135 49.6
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 1.3e-20 103.6 127 41.7
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 1.1e-19 100.5 77 66.2
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 7.1e-19 97.8 109 52.3
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 3.5e-18 95.5 138 39.9
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 2.0e-13 79.7 87 50.6
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 7.9e-10 67.8 46 69.6


User provided reference genes

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