Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 2.4e-193 678.7 359 100.0
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 4.0e-188 661.4 359 98.6
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 8.4e-186 653.7 359 97.8
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 2.8e-181 638.6 359 94.4
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 5.2e-180 634.4 359 93.9
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 8.4e-170 600.5 368 89.1
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 1.4e-164 583.2 368 87.0
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 1.4e-164 583.2 368 87.0
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 7.6e-163 577.4 362 86.7
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 1.3e-162 576.6 364 86.3
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 1.3e-162 576.6 364 86.3
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 1.1e-161 573.5 362 86.2
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 1.1e-161 573.5 362 86.2
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 9.3e-161 570.5 367 86.6
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 2.7e-160 568.9 364 85.7
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 1.0e-159 567.0 362 85.4
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 2.3e-159 565.8 364 85.4
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 1.1e-158 563.5 366 85.2
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 1.8e-151 539.7 349 85.4
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 2.8e-149 532.3 368 81.0
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 1.8e-148 529.6 365 80.3
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 3.1e-148 528.9 368 81.0
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 1.6e-144 516.5 363 80.4
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 5.0e-122 441.8 334 74.9
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 9.8e-110 401.0 372 61.0
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 2.9e-106 389.4 375 59.2
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 2.9e-85 319.7 371 51.2
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 8.3e-85 318.2 366 48.9
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 1.1e-84 317.8 376 48.7
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 2.4e-84 316.6 375 48.5
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 9.2e-84 314.7 367 50.7
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 4.6e-83 312.4 369 49.1
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 4.6e-83 312.4 369 49.1
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 6.0e-83 312.0 364 49.7
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 7.8e-83 311.6 369 49.9
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 7.8e-83 311.6 369 49.6
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 3.0e-82 309.7 370 49.5
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 3.0e-82 309.7 370 49.5
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 5.1e-82 308.9 372 50.5
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 6.6e-82 308.5 372 51.3
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 1.1e-81 307.8 372 48.9
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 3.3e-81 306.2 368 49.5
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 5.6e-81 305.4 369 49.9
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 1.2e-80 304.3 365 48.8
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.8e-80 303.1 372 48.4
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.7e-80 302.4 372 48.7
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 8.1e-80 301.6 372 48.4
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 8.1e-80 301.6 372 48.7
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 8.1e-80 301.6 372 48.4
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 1.4e-79 300.8 365 48.8
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.8e-79 300.4 372 48.1
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 3.1e-79 299.7 365 49.3
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 5.2e-79 298.9 369 49.9
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 6.8e-79 298.5 380 47.1
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 2.6e-78 296.6 329 51.1
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 2.6e-78 296.6 320 51.2
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 5.8e-78 295.4 356 48.9
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 5.8e-78 295.4 371 47.2
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 1.7e-77 293.9 375 46.4
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 1.9e-76 290.4 366 46.2
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 2.4e-76 290.0 374 46.3
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 4.1e-76 289.3 364 47.3
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 7.1e-76 288.5 366 47.5
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 9.2e-76 288.1 336 50.6
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 6.0e-75 285.4 353 48.4
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 6.0e-75 285.4 374 44.4
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 6.0e-75 285.4 365 46.3
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 1.0e-74 284.6 372 46.0
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 1.3e-74 284.3 319 50.8
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 3.0e-74 283.1 408 44.6
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 3.0e-74 283.1 364 46.2
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 5.1e-74 282.3 360 45.0
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 5.1e-74 282.3 368 45.7
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 5.1e-74 282.3 371 46.1
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 8.6e-74 281.6 371 45.3
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 1.5e-73 280.8 373 46.9
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 1.5e-73 280.8 370 46.8
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 2.5e-73 280.0 374 47.1
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 2.8e-72 276.6 366 45.9
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 3.6e-72 276.2 350 47.4
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 8.1e-72 275.0 352 45.2
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 2.4e-71 273.5 367 41.7
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 3.1e-71 273.1 337 47.2
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 2.6e-70 270.0 359 46.2
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 3.4e-70 269.6 366 45.6
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 4.4e-70 269.2 375 45.1
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 1.7e-69 267.3 354 45.2
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 3.8e-69 266.2 365 43.8
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 4.9e-69 265.8 367 43.1
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 6.4e-69 265.4 343 46.1
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 1.4e-68 264.2 357 44.5
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 3.2e-68 263.1 350 46.3
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 5.4e-68 262.3 360 44.7
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 5.4e-68 262.3 357 45.7
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 1.2e-67 261.2 367 43.9
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 6.0e-67 258.8 369 42.8
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 1.3e-66 257.7 363 45.2
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 1.3e-66 257.7 354 44.6
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 1.1e-65 254.6 365 43.0
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 1.1e-65 254.6 372 43.8
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 2.5e-65 253.4 363 42.7
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 3.3e-65 253.1 365 42.7
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 4.3e-65 252.7 306 47.1
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 9.6e-65 251.5 367 44.1
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 1.3e-64 251.1 331 44.4
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 3.6e-64 249.6 365 44.9
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 2.4e-63 246.9 368 42.9
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 4.0e-63 246.1 363 43.3
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 5.3e-63 245.7 363 41.6
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 2.2e-61 240.4 370 40.8
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 7.1e-60 235.3 395 39.7
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 2.7e-59 233.4 303 45.2
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 3.5e-59 233.0 365 39.7
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 1.3e-58 231.1 326 45.4
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 3.9e-58 229.6 349 39.5
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 6.6e-58 228.8 323 43.0
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 1.9e-57 227.3 361 41.8
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 9.6e-57 224.9 357 37.3
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 1.3e-56 224.6 345 42.3
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 1.3e-53 214.5 358 40.8
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 1.1e-52 211.5 355 40.6
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 1.1e-52 211.5 350 40.6
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 1.2e-51 208.0 326 40.2
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 4.3e-49 199.5 345 38.0
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 9.0e-47 191.8 280 41.1
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 1.5e-46 191.0 274 42.0
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 1.0e-45 188.3 367 39.5
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 4.2e-44 183.0 332 38.0
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 4.0e-39 166.4 261 39.8
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 6.5e-37 159.1 197 45.2
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 6.5e-29 132.5 128 57.8
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 1.0e-26 125.2 130 53.1
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 1.1e-25 121.7 381 31.5
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.4e-23 114.8 136 44.1
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.0e-22 110.9 138 41.3
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 4.5e-22 109.8 362 29.6
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.2e-20 103.2 130 43.1
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 3.6e-19 100.1 125 43.2
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 2.6e-17 94.0 243 29.6
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 1.7e-16 91.3 157 38.9
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 2.2e-16 90.9 355 23.9
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 2.8e-16 90.5 374 24.3
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 2.0e-14 84.3 194 32.0
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 2.6e-14 84.0 378 24.1
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 6.5e-13 79.3 100 42.0
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 2.5e-12 77.4 96 46.9
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 3.9e-10 70.1 127 32.3
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 3.3e-09 67.0 232 24.1
Glyma.15G198202 Glycine max HOM05D002428 ORTHO05D005085 9.1e-07 58.9 61 45.9


User provided reference genes

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