Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03330 Brassica carinata HOM05D004684 ORTHO05D006904 2.3e-55 218.8 119 100.0
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 2.4e-52 208.8 117 98.3
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 2.4e-52 208.8 117 98.3
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 2.4e-52 208.8 117 98.3
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 1.2e-48 196.4 118 86.4
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 1.2e-48 196.4 118 86.4
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 8.1e-37 157.1 117 70.9
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 1.4e-36 156.4 118 70.3
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 2.0e-35 152.5 120 71.7
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 6.5e-34 147.5 117 67.5
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 1.4e-33 146.4 118 68.6
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 9.3e-33 143.7 117 66.7
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 1.2e-32 143.3 122 67.2
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 2.9e-26 122.1 122 56.6
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 3.2e-25 118.6 123 55.3
COL.COLO4_15980 Corchorus olitorius HOM05D004684 ORTHO05D006904 7.9e-24 114.0 118 53.4
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 3.0e-23 112.1 118 53.4
Duzib151G0232 Durio zibethinus HOM05D004684 ORTHO05D006904 6.7e-23 110.9 118 52.5
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 1.1e-22 110.2 117 49.6
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 1.1e-22 110.2 117 49.6
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 2.5e-22 109.0 118 50.8
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 3.3e-22 108.6 117 48.7
RcHm_v2.0_Chr7g0203561 Rosa chinensis HOM05D004684 ORTHO05D006904 3.3e-22 108.6 117 48.7
Glyma.08G047100 Glycine max HOM05D004684 ORTHO05D006904 4.3e-22 108.2 117 48.7
Lj4g0013294 Lotus japonicus HOM05D004684 ORTHO05D006904 5.7e-22 107.8 117 52.1
RcHm_v2.0_Chr4g0395921 Rosa chinensis HOM05D004684 ORTHO05D006904 7.4e-22 107.5 118 50.0
Rhsim04G0170900 Rhododendron simsii HOM05D004684 ORTHO05D006904 9.7e-22 107.1 117 47.9
VMungo0251G0467 Vigna mungo HOM05D004684 ORTHO05D006904 1.3e-21 106.7 117 48.7
arahy.Tifrunner.gnm1.ann1.14QJGF Arachis hypogaea HOM05D004684 ORTHO05D006904 1.6e-21 106.3 119 50.4
arahy.Tifrunner.gnm1.ann1.1TG9FP Arachis hypogaea HOM05D004684 ORTHO05D006904 1.6e-21 106.3 119 50.4
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 1.6e-21 106.3 120 47.5
Phvul.002G322100 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.6e-21 106.3 117 48.7
Glyma.05G240000 Glycine max HOM05D004684 ORTHO05D006904 2.2e-21 105.9 117 50.4
Migut.G00560 Erythranthe guttata HOM05D004684 ORTHO05D006904 3.7e-21 105.1 122 49.2
MD16G1228500 Malus domestica HOM05D004684 ORTHO05D006904 3.7e-21 105.1 118 50.0
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 4.8e-21 104.8 119 47.9
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 6.3e-21 104.4 120 47.5
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 1.1e-20 103.6 118 50.8
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 1.1e-20 103.6 118 52.5
FvH4_4g05030 Fragaria vesca HOM05D004684 ORTHO05D006904 1.4e-20 103.2 118 49.2
FAN22G2229 Fragaria x ananassa HOM05D004684 ORTHO05D006904 1.4e-20 103.2 118 49.2
Manes.03G157750 Manihot esculenta HOM05D004684 ORTHO05D006904 1.8e-20 102.8 117 46.2
PGR031G2768 Punica granatum HOM05D004684 ORTHO05D006904 5.3e-20 101.3 117 48.7
QL06p021563 Quercus lobata HOM05D004684 ORTHO05D006904 5.3e-20 101.3 120 47.5
Lalb_Chr09g0330801 Lupinus albus HOM05D004684 ORTHO05D006904 6.9e-20 100.9 120 51.7
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 6.9e-20 100.9 117 47.9
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 6.9e-20 100.9 117 47.9
Potri.008G172700 Populus trichocarpa HOM05D004684 ORTHO05D006904 6.9e-20 100.9 120 49.2
Prupe.1G050600 Prunus persica HOM05D004684 ORTHO05D006904 6.9e-20 100.9 120 45.8
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 9.0e-20 100.5 67 67.2
Medtr5g055940 Medicago truncatula HOM05D004684 ORTHO05D006904 9.0e-20 100.5 121 47.1
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 9.0e-20 100.5 117 51.3
vmacro08564 Vaccinium macrocarpon HOM05D004684 ORTHO05D006904 1.2e-19 100.1 67 65.7
Ca_04899_v3 Cicer arietinum L. HOM05D004684 ORTHO05D006904 2.0e-19 99.4 117 51.3
Eucgr.G01176 Eucalyptus grandis HOM05D004684 ORTHO05D006904 2.0e-19 99.4 54 81.5
Eucgr.H02859 Eucalyptus grandis HOM05D004684 ORTHO05D006904 2.0e-19 99.4 54 81.5
CANSAT78G0903 Cannabis sativa HOM05D004684 ORTHO05D006904 3.4e-19 98.6 117 47.9
CiPaw.01G176700 Carya illinoinensis HOM05D004684 ORTHO05D006904 1.0e-18 97.1 117 44.4
CsaV3_2G012380 Cucumis sativus L. HOM05D004684 ORTHO05D006904 1.3e-18 96.7 54 79.6
SalBow2G2567 Salvia bowleyana HOM05D004684 ORTHO05D006904 1.3e-18 96.7 120 49.2
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 1.7e-18 96.3 54 77.8
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 1.7e-18 96.3 54 77.8
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 1.7e-18 96.3 54 77.8
unitig_748.g8291 Utricularia gibba HOM05D004684 ORTHO05D006904 1.7e-18 96.3 57 70.2
Solyc09g090840.3 Solanum lycopersicum HOM05D004684 ORTHO05D006904 2.2e-18 95.9 119 49.6
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 3.8e-18 95.1 57 73.7
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 3.8e-18 95.1 54 79.6
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 3.8e-18 95.1 120 45.8
Peaxi162Scf00531g00034 Petunia axillaris HOM05D004684 ORTHO05D006904 3.8e-18 95.1 54 77.8
CAN.G812.19 Capsicum annuum HOM05D004684 ORTHO05D006904 5.0e-18 94.7 119 49.6
Lj3C639G0 Lonicera japonica HOM05D004684 ORTHO05D006904 5.0e-18 94.7 117 48.7
EL10Ac3g06680 Beta vulgaris HOM05D004684 ORTHO05D006904 6.5e-18 94.4 120 46.7
Sc19g0005610 Simmondsia chinensis HOM05D004684 ORTHO05D006904 6.5e-18 94.4 119 45.4
MD13G1223700 Malus domestica HOM05D004684 ORTHO05D006904 8.5e-18 94.0 118 44.1
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 8.5e-18 94.0 121 51.2
PSO832G1147 Papaver somniferum HOM05D004684 ORTHO05D006904 1.1e-17 93.6 53 75.5
Sopen09g033800 Solanum pennellii HOM05D004684 ORTHO05D006904 1.1e-17 93.6 119 48.7
PGSC0003DMG400001555 Solanum tuberosum HOM05D004684 ORTHO05D006904 1.1e-17 93.6 119 48.7
Potri.010G064700 Populus trichocarpa HOM05D004684 ORTHO05D006904 1.4e-17 93.2 54 74.1
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 1.4e-17 93.2 117 42.7
HPP92_005111 Vanilla planifolia HOM05D004684 ORTHO05D006904 1.4e-17 93.2 54 75.9
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 1.9e-17 92.8 117 44.4
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 1.9e-17 92.8 117 44.4
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 1.9e-17 92.8 120 44.2
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 1.9e-17 92.8 117 42.7
Hund24872 Selenicereus undatus HOM05D004684 ORTHO05D006904 1.9e-17 92.8 118 44.9
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 2.5e-17 92.4 54 70.4
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 2.5e-17 92.4 53 75.5
Lsat_1_v5_gn_1_75460 Lactuca sativa HOM05D004684 ORTHO05D006904 3.2e-17 92.0 54 74.1
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 4.2e-17 91.7 117 44.4
SEGI_18338 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 4.2e-17 91.7 50 80.0
Psat2g106400 Pisum sativum HOM05D004684 ORTHO05D006904 5.5e-17 91.3 117 48.7
Nn1g02992 Nelumbo nucifera HOM05D004684 ORTHO05D006904 9.4e-17 90.5 55 70.9
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 9.4e-17 90.5 61 65.6
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 2.1e-16 89.4 50 78.0
ATR0787G095 Amborella trichopoda HOM05D004684 ORTHO05D006904 2.7e-16 89.0 119 46.2
BcaB06g26612 Brassica carinata HOM05D004684 ORTHO05D006904 7.9e-16 87.4 117 46.2
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 1.0e-15 87.0 48 75.0
SMO273G0058 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 1.0e-15 87.0 57 63.2
SMO147G0416 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 1.8e-15 86.3 64 56.2
SEGI_18835 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 2.3e-15 85.9 47 76.6
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 3.9e-15 85.1 48 75.0
CBR_g20386 Chara braunii HOM05D004684 ORTHO05D006904 1.1e-14 83.6 52 65.4
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 1.1e-14 83.6 69 58.0
Aqoxy5G00132 Aquilegia oxysepala HOM05D004684 ORTHO05D006904 2.5e-14 82.4 118 39.8
Zm00001eb197630 Zea mays HOM05D004684 ORTHO05D006904 2.5e-14 82.4 47 76.6
Nitab4.5_0022682g0010 Nicotiana tabacum HOM05D004684 ORTHO05D006904 9.7e-14 80.5 117 41.0
MCO15G005 Micromonas commoda HOM05D004684 ORTHO05D006904 1.3e-10 70.1 47 66.0
PRCOL_00005018 Prasinoderma coloniale HOM05D004684 ORTHO05D006904 1.9e-09 66.2 44 63.6
Pp3s32_289 Physcomitrium patens HOM05D004684 ORTHO05D006904 2.5e-09 65.9 50 50.0
Phvul.009G129001 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.4e-07 60.1 90 43.3


User provided reference genes

Program Settings