Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03329 Brassica carinata HOM05D007083 ORTHO05D008801 7.4e-67 257.7 198 100.0
BcaC06g36074 Brassica carinata HOM05D007083 ORTHO05D008801 1.8e-17 93.6 184 46.7
BolC7t41234H Brassica oleracea HOM05D007083 ORTHO05D008801 1.8e-17 93.6 184 46.7
Thhalv10022592m.g Eutrema salsugineum HOM05D007083 ORTHO05D008801 4.5e-16 89.0 184 46.7
BcaB03g14591 Brassica carinata HOM05D007083 ORTHO05D008801 2.9e-15 86.3 183 53.0
Sp3g28900 Schrenkiella parvula HOM05D007083 ORTHO05D008801 5.0e-15 85.5 79 54.4
Carub.0003s2940 Capsella rubella HOM05D007083 ORTHO05D008801 1.9e-14 83.6 184 46.7
C07p08180 Brassica napus HOM05D007083 ORTHO05D008801 4.2e-14 82.4 76 55.3
AL3G47400 Arabidopsis lyrata HOM05D007083 ORTHO05D008801 5.5e-14 82.0 184 47.3
AT2G15630 Arabidopsis thaliana HOM05D007083 ORTHO05D008801 3.6e-13 79.3 184 46.2
CARHR106000 Cardamine hirsuta HOM05D007083 ORTHO05D008801 8.0e-13 78.2 184 46.2
A07p05120 Brassica napus HOM05D007083 ORTHO05D008801 2.3e-12 76.6 183 45.4
BraA07t28306Z Brassica rapa HOM05D007083 ORTHO05D008801 2.3e-12 76.6 183 45.4
Aa31LG8G13290 Aethionema arabicum HOM05D007083 ORTHO05D008801 8.3e-10 68.2 60 56.7
PGR042G0769 Punica granatum HOM05D007083 ORTHO05D008801 1.2e-08 64.3 84 38.1
Prupe.8G019300 Prunus persica HOM05D007083 ORTHO05D008801 2.0e-08 63.5 84 38.1
THA.LOC104819595 Tarenaya hassleriana HOM05D007083 ORTHO05D008801 2.0e-08 63.5 79 41.8
RcHm_v2.0_Chr6g0260361 Rosa chinensis HOM05D007083 ORTHO05D008801 2.7e-08 63.2 80 37.5
MBI02_g38361_MAGBIO Magnolia biondii HOM05D007426 ORTHO05D009167 5.9e-08 62.0 85 36.5
RcHm_v2.0_Chr6g0260391 Rosa chinensis HOM05D007083 ORTHO05D008801 5.9e-08 62.0 86 34.9
Eucgr.G00774 Eucalyptus grandis HOM05D007426 ORTHO05D009167 1.7e-07 60.5 85 37.6
PGR119G0474 Punica granatum HOM05D007426 ORTHO05D009167 2.9e-07 59.7 87 35.6
RcHm_v2.0_Chr6g0260761 Rosa chinensis HOM05D007083 ORTHO05D008801 2.9e-07 59.7 86 38.4
Nitab4.5_0001401g0200 Nicotiana tabacum HOM05D007083 ORTHO05D008801 3.8e-07 59.3 84 34.5
CDE07G1153 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 5.0e-07 58.9 86 36.0
AUR62036473 Chenopodium quinoa HOM05D007390 ORTHO05D009114 6.6e-07 58.5 87 34.5
ECA234G2171 Erigeron canadensis HOM05D007426 ORTHO05D009167 6.6e-07 58.5 86 36.0
Gohir.D12G042300 Gossypium hirsutum HOM05D007083 ORTHO05D008801 1.1e-06 57.8 72 41.7
CSS0006507 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 1.5e-06 57.4 75 37.3
CSS0028756 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 1.5e-06 57.4 75 37.3
Solyc01g109060.4 Solanum lycopersicum HOM05D007083 ORTHO05D008801 1.5e-06 57.4 84 33.3
Sopen01g051260 Solanum pennellii HOM05D007083 ORTHO05D008801 1.5e-06 57.4 84 33.3
PGSC0003DMG400025930 Solanum tuberosum HOM05D007083 ORTHO05D008801 1.5e-06 57.4 84 33.3
Gohir.D02G172600 Gossypium hirsutum HOM05D007426 ORTHO05D009167 1.9e-06 57.0 75 38.7
Glyma.14G156100 Glycine max HOM05D007426 ORTHO05D009167 2.5e-06 56.6 84 29.8
Gohir.A03G149700 Gossypium hirsutum HOM05D007426 ORTHO05D009167 2.5e-06 56.6 75 38.7
Gohir.A12G030100 Gossypium hirsutum HOM05D007083 ORTHO05D008801 2.5e-06 56.6 76 39.5
Gorai.005G194300 Gossypium raimondii HOM05D007426 ORTHO05D009167 2.5e-06 56.6 75 37.3
EL10Ac4g07549 Beta vulgaris HOM05D007390 ORTHO05D009114 3.3e-06 56.2 87 34.5
CANSAT25G2501 Cannabis sativa HOM05D007083 ORTHO05D008801 3.3e-06 56.2 60 46.7
FAN11G1706 Fragaria x ananassa HOM05D007390 ORTHO05D009114 3.3e-06 56.2 76 43.4
CAN.G322.86 Capsicum annuum HOM05D007083 ORTHO05D008801 4.3e-06 55.8 84 34.5
TAR629G2850 Trochodendron aralioides HOM05D007426 ORTHO05D009167 4.3e-06 55.8 75 36.0
CAN.G354.45 Capsicum annuum HOM05D007390 ORTHO05D009114 5.6e-06 55.5 94 30.9
AUR62017120 Chenopodium quinoa HOM05D007390 ORTHO05D009114 5.6e-06 55.5 87 34.5
Actinidia17838 Actinidia chinensis HOM05D007083 ORTHO05D008801 7.3e-06 55.1 55 47.3
Ca_20820_v3 Cicer arietinum L. HOM05D007083 ORTHO05D008801 7.3e-06 55.1 81 35.8
ECA246G4229 Erigeron canadensis HOM05D000587 ORTHO05D009114 7.3e-06 55.1 90 32.2
SMO367G1176 Selaginella moellendorffii HOM05D009701 ORTHO05D000003 9.5e-06 54.7 89 30.3


User provided reference genes

Program Settings