Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 1.3e-152 543.1 289 100.0
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 2.5e-148 528.9 289 97.9
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 2.6e-145 518.8 297 94.9
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 3.4e-137 491.9 290 92.1
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 3.7e-136 488.4 290 91.0
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 1.1e-135 486.9 290 90.7
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 5.4e-135 484.6 291 90.7
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 1.2e-134 483.4 291 90.4
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 1.2e-134 483.4 291 90.4
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 2.7e-134 482.3 292 89.0
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 5.6e-132 474.6 291 90.0
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 1.6e-131 473.0 294 90.8
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 3.1e-130 468.8 292 88.0
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 4.2e-127 458.4 295 86.4
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 4.3e-124 448.4 298 83.6
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 7.6e-121 437.6 297 81.1
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 1.9e-116 422.9 293 81.6
BraA03t13497Z Brassica rapa HOM05D005102 ORTHO05D006090 1.2e-113 413.7 291 81.8
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 8.7e-109 397.5 299 75.6
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 3.7e-99 365.5 264 76.1
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 1.1e-98 364.0 294 70.1
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 3.1e-98 362.5 296 69.3
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 3.1e-98 362.5 296 69.9
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 6.5e-96 354.8 296 68.6
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 3.2e-95 352.4 296 67.6
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 1.2e-94 350.5 295 67.5
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 1.0e-93 347.4 299 65.6
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 3.0e-93 345.9 296 66.2
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 2.5e-92 342.8 299 65.9
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 3.3e-92 342.4 294 66.3
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 9.7e-92 340.9 296 65.9
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 1.6e-91 340.1 296 66.2
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 4.8e-91 338.6 298 64.8
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 6.3e-91 338.2 298 65.4
Glyma.15G125200 Glycine max HOM05D005102 ORTHO05D006090 6.3e-91 338.2 295 66.8
Glyma.09G019100 Glycine max HOM05D005102 ORTHO05D006090 8.2e-91 337.8 295 66.4
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 2.4e-90 336.3 296 64.2
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 2.6e-89 332.8 296 63.2
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 7.7e-89 331.3 295 64.1
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 7.7e-89 331.3 293 66.6
CSS0043447 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 1.0e-88 330.9 296 63.9
CSS0019941 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 1.3e-88 330.5 300 63.3
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 1.3e-88 330.5 283 65.7
TPR.G17506 Trifolium pratense HOM05D005102 ORTHO05D006090 2.9e-88 329.3 296 66.2
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 1.1e-87 327.4 295 65.4
Ca_11361_v3 Cicer arietinum L. HOM05D005102 ORTHO05D006090 1.4e-87 327.0 296 64.9
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 1.4e-87 327.0 294 62.6
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 1.4e-87 327.0 295 65.4
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 1.4e-87 327.0 290 64.5
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 2.5e-87 326.2 291 63.6
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 4.2e-87 325.5 291 63.6
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 5.5e-87 325.1 302 62.9
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 7.2e-87 324.7 291 63.2
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.2e-86 323.9 291 63.6
FAN18G4219 Fragaria x ananassa HOM05D005102 ORTHO05D006090 2.1e-86 323.2 291 62.9
FvH4_5g17100 Fragaria vesca HOM05D005102 ORTHO05D006090 6.1e-86 321.6 291 62.5
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 1.0e-85 320.9 291 63.2
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 1.0e-85 320.9 295 62.4
GSVIVG01027934001 Vitis vinifera HOM05D005102 ORTHO05D006090 1.8e-85 320.1 294 61.2
Psat7g046400 Pisum sativum HOM05D005102 ORTHO05D006090 5.1e-85 318.5 296 63.9
Psat1g170520 Pisum sativum HOM05D005102 ORTHO05D006090 6.7e-85 318.2 297 64.0
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 8.8e-85 317.8 297 62.0
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 2.5e-84 316.2 255 69.0
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 3.3e-84 315.8 301 60.8
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 4.3e-84 315.5 314 60.8
VMungo0540G0767 Vigna mungo HOM05D005102 ORTHO05D006090 5.7e-84 315.1 280 65.7
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 1.3e-83 313.9 296 60.8
Nitab4.5_0005154g0050 Nicotiana tabacum HOM05D005102 ORTHO05D006090 3.7e-83 312.4 332 56.3
Rhsim01G0226300 Rhododendron simsii HOM05D005102 ORTHO05D006090 4.8e-83 312.0 320 58.1
RcHm_v2.0_Chr7g0178711 Rosa chinensis HOM05D005102 ORTHO05D006090 1.8e-82 310.1 299 60.5
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 3.1e-82 309.3 298 61.1
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 6.9e-82 308.1 295 61.4
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 1.5e-81 307.0 259 66.4
Sabra10G0042100 Salix brachista HOM05D005102 ORTHO05D006090 1.5e-81 307.0 310 58.1
arahy.Tifrunner.gnm1.ann1.Z186RR Arachis hypogaea HOM05D005102 ORTHO05D006090 2.0e-81 306.6 322 57.8
Lj6A637G59 Lonicera japonica HOM05D005102 ORTHO05D006090 4.5e-81 305.4 361 53.5
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 8.5e-80 301.2 295 60.3
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 5.5e-79 298.5 298 59.4
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 1.2e-78 297.4 298 61.4
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 1.2e-78 297.4 290 60.3
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 1.6e-78 297.0 294 59.5
MSTRG.9850 Avicennia marina HOM05D005102 ORTHO05D006090 2.7e-78 296.2 306 58.2
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 3.6e-78 295.8 254 63.0
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 4.7e-78 295.4 308 55.8
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 2.3e-77 293.1 295 59.7
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 2.6e-76 289.7 297 57.9
Oeu047122.2 Olea europaea HOM05D005102 ORTHO05D006090 9.7e-76 287.7 385 47.8
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 3.7e-75 285.8 295 58.3
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 4.8e-75 285.4 254 62.2
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 4.8e-75 285.4 295 59.0
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 6.3e-75 285.0 286 58.0
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 8.2e-75 284.6 249 63.1
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 2.4e-74 283.1 295 58.0
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 3.1e-74 282.7 228 69.7
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 7.0e-74 281.6 285 58.6
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 2.2e-72 276.6 299 56.9
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 5.0e-72 275.4 250 63.6
PGSC0003DMG400001501 Solanum tuberosum HOM05D005102 ORTHO05D006090 4.2e-71 272.3 388 46.9
SGA_v2.0_scaffold127G34013 Striga asiatica HOM05D005102 ORTHO05D006090 7.2e-71 271.6 297 57.2
Hund22254 Selenicereus undatus HOM05D005102 ORTHO05D006090 3.6e-70 269.2 356 49.4
AUR62015240 Chenopodium quinoa HOM05D005102 ORTHO05D006090 1.8e-69 266.9 297 56.2
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 5.2e-69 265.4 250 60.0
SGA_v2.0_scaffold454G51888 Striga asiatica HOM05D005102 ORTHO05D006090 1.4e-66 257.3 295 54.9
MELO3C022272.2 Cucumis melo HOM05D005102 ORTHO05D006090 3.1e-66 256.1 286 53.8
SGA_v2.0_scaffold193G40717 Striga asiatica HOM05D005102 ORTHO05D006090 4.5e-65 252.3 221 64.7
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 4.2e-63 245.7 248 52.8
CsaV3_6G008560 Cucumis sativus L. HOM05D005102 ORTHO05D006090 3.6e-62 242.7 237 59.9
vmacro04848 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 1.4e-61 240.7 198 69.2
TWI63G1490 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 3.8e-56 222.6 213 60.1
Cpa.g.sc59.14 Carica papaya HOM05D005102 ORTHO05D006090 2.3e-53 213.4 188 65.4
Peaxi162Scf00531g00334 Petunia axillaris HOM05D005102 ORTHO05D006090 1.4e-50 204.1 173 66.5
vmacro20979 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 5.4e-50 202.2 233 55.4
SHI00826 Sapria himalayana HOM05D005102 ORTHO05D006090 3.0e-45 186.4 271 45.4
AagrBONN_evm.TU.Sc2ySwM_228.1541 Anthoceros agrestis HOM05D005102 ORTHO05D006090 4.0e-45 186.0 235 44.3
AagrBONN_evm.TU.Sc2ySwM_368.1701 Anthoceros agrestis HOM05D005102 ORTHO05D006090 4.0e-45 186.0 238 43.7
SalBow2G1408 Salvia bowleyana HOM05D005102 ORTHO05D006090 2.6e-44 183.3 183 58.5
ECA247G3419 Erigeron canadensis HOM05D005102 ORTHO05D006090 7.5e-44 181.8 182 60.4
Mapoly0019s0137 Marchantia polymorpha HOM05D005102 ORTHO05D006090 7.0e-42 175.3 237 44.3
SMO364G0891 Selaginella moellendorffii HOM05D005102 ORTHO05D006090 2.7e-41 173.3 230 44.3
Nitab4.5_0002613g0070 Nicotiana tabacum HOM05D005102 ORTHO05D006090 8.0e-38 161.8 116 74.1
CBR_g37523 Chara braunii HOM05D005102 ORTHO05D006090 3.5e-33 146.4 231 41.6
Zm00001eb048840 Zea mays HOM05D005102 ORTHO05D006090 3.5e-33 146.4 162 54.3
Pp3c27_3370 Physcomitrium patens HOM05D005102 ORTHO05D006090 3.9e-32 142.9 241 34.9
Eucgr.G00566 Eucalyptus grandis HOM05D005102 ORTHO05D006090 7.3e-31 138.7 121 59.5
Phvul.006G132800 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 9.5e-31 138.3 179 52.5
arahy.Tifrunner.gnm1.ann1.4HQ694 Arachis hypogaea HOM05D005102 ORTHO05D006090 1.1e-29 134.8 116 65.5
Peaxi162Scf00531g00327 Petunia axillaris HOM05D000868 ORTHO05D000711 2.3e-29 133.7 154 50.6
Zm00001eb144710 Zea mays HOM05D005102 ORTHO05D006090 3.0e-24 116.7 174 44.8
unitig_748.g8293 Utricularia gibba HOM05D005102 ORTHO05D006090 5.1e-24 115.9 130 54.6
Zm00001eb188010 Zea mays HOM05D005102 ORTHO05D006090 6.6e-24 115.5 118 54.2
Pp3c16_3280 Physcomitrium patens HOM05D005102 ORTHO05D006090 1.2e-22 111.3 233 32.2
Dinv30772 Davidia involucrata HOM05D005102 ORTHO05D006090 7.6e-20 102.1 82 69.5
Zm00001eb021120 Zea mays HOM05D005102 ORTHO05D006090 6.4e-19 99.0 105 52.4
Zm00001eb156410 Zea mays HOM05D005102 ORTHO05D006090 6.4e-19 99.0 105 52.4
Zm00001eb291560 Zea mays HOM05D005102 ORTHO05D006090 9.2e-18 95.1 105 51.4
CiPaw.02G105900 Carya illinoinensis HOM05D005102 ORTHO05D006090 8.6e-16 88.6 101 52.5
Cre02.g090650 Chlamydomonas reinhardtii HOM05D005102 ORTHO05D006090 6.8e-13 79.0 215 27.0
Zm00001eb324110 Zea mays HOM05D005102 ORTHO05D006090 4.2e-10 69.7 62 58.1
Aa31LG8G9420 Aethionema arabicum HOM05D005102 ORTHO05D006090 5.4e-10 69.3 62 62.9
PRCOL_00001816 Prasinoderma coloniale HOM05D005102 ORTHO05D006090 2.1e-09 67.4 188 30.9
Zm00001eb049220 Zea mays HOM05D005102 ORTHO05D006090 9.6e-07 58.5 51 58.8
Zm00001eb318660 Zea mays HOM05D005102 ORTHO05D006090 9.6e-07 58.5 51 58.8
Zm00001eb402860 Zea mays HOM05D005102 ORTHO05D006090 9.6e-07 58.5 51 58.8
Zm00001eb423240 Zea mays HOM05D005102 ORTHO05D006090 9.6e-07 58.5 51 58.8
MCO03G437 Micromonas commoda HOM05D005102 ORTHO05D006090 3.6e-06 56.6 163 32.5


User provided reference genes

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