Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03192 Brassica carinata HOM05D006660 ORTHO05D008184 0.0e+00 1108.6 551 100.0
C03p55040 Brassica napus HOM05D006660 ORTHO05D008184 0.0e+00 1099.0 551 99.5
BolC3t17779H Brassica oleracea HOM05D006660 ORTHO05D008184 0.0e+00 1095.1 558 98.4
A03p44410 Brassica napus HOM05D006660 ORTHO05D008184 0.0e+00 1082.4 553 97.6
BraA03t13574Z Brassica rapa HOM05D006660 ORTHO05D008184 0.0e+00 1082.4 558 97.1
BcaB08g34485 Brassica carinata HOM05D006660 ORTHO05D008184 2.7e-308 1061.2 553 95.3
Sp3g23370 Schrenkiella parvula HOM05D006660 ORTHO05D008184 2.3e-296 1021.5 581 88.0
Thhalv10002462m.g Eutrema salsugineum HOM05D006660 ORTHO05D008184 7.1e-293 1010.0 576 88.2
AT2G04740 Arabidopsis thaliana HOM05D006660 ORTHO05D008184 1.6e-292 1008.8 577 87.9
AL3G42350 Arabidopsis lyrata HOM05D006660 ORTHO05D008184 1.9e-290 1001.9 577 87.5
Carub.0003s2635 Capsella rubella HOM05D006660 ORTHO05D008184 9.5e-290 999.6 574 88.0
CARHR102690 Cardamine hirsuta HOM05D006660 ORTHO05D008184 2.6e-287 991.5 575 88.0
Aa31sc53G10 Aethionema arabicum HOM05D006660 ORTHO05D008184 1.6e-281 972.2 581 83.3
THA.LOC104808860 Tarenaya hassleriana HOM05D006660 ORTHO05D008184 1.3e-259 899.4 580 77.8
Thecc.01G186300 Theobroma cacao HOM05D006660 ORTHO05D008184 1.7e-246 855.9 581 73.7
Rhsim04G0045800 Rhododendron simsii HOM05D006660 ORTHO05D008184 1.9e-242 842.4 576 72.6
PGR142G4370 Punica granatum HOM05D006660 ORTHO05D008184 2.8e-241 838.6 581 71.8
FAN14G2696 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.1e-240 836.6 577 71.9
FAN14G4026 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.1e-240 836.6 577 71.9
FvH4_6g41550 Fragaria vesca HOM05D006660 ORTHO05D008184 1.4e-240 836.3 577 71.9
Prupe.3G205300 Prunus persica HOM05D006660 ORTHO05D008184 1.4e-240 836.3 579 72.0
RcHm_v2.0_Chr2g0157231 Rosa chinensis HOM05D006660 ORTHO05D008184 2.4e-240 835.5 576 71.7
Gorai.001G097700 Gossypium raimondii HOM05D006660 ORTHO05D008184 9.0e-240 833.6 573 71.9
Manes.12G060700 Manihot esculenta HOM05D006660 ORTHO05D008184 9.0e-240 833.6 584 71.2
FAN02G1797 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.5e-239 832.8 576 71.5
Nn1g07385 Nelumbo nucifera HOM05D006660 ORTHO05D008184 5.9e-239 830.9 573 71.6
TWI36G0095 Tripterygium wilfordii HOM05D006660 ORTHO05D008184 7.7e-239 830.5 569 72.4
Actinidia10783 Actinidia chinensis HOM05D006660 ORTHO05D008184 3.8e-238 828.2 572 72.2
Duzib133G0254 Durio zibethinus HOM05D006660 ORTHO05D008184 5.0e-238 827.8 576 70.3
Potri.014G163200 Populus trichocarpa HOM05D006660 ORTHO05D008184 5.0e-238 827.8 584 69.7
CSS0034515 Camellia sinensis var. sinensis HOM05D006660 ORTHO05D008184 5.5e-237 824.3 581 70.2
FAN05G5067 Fragaria x ananassa HOM05D006660 ORTHO05D008184 4.6e-236 821.2 576 70.8
Peaxi162Scf01333g00136 Petunia axillaris HOM05D006660 ORTHO05D008184 1.4e-235 819.7 563 72.1
Nitab4.5_0008746g0020 Nicotiana tabacum HOM05D006660 ORTHO05D008184 1.8e-235 819.3 567 70.9
MBI16_g31717_MAGBIO Magnolia biondii HOM05D006660 ORTHO05D008184 3.9e-235 818.1 560 70.9
Sabra14G0124600 Salix brachista HOM05D006660 ORTHO05D008184 3.9e-235 818.1 585 69.4
Atru.chr6.3323 Acer truncatum HOM05D006660 ORTHO05D008184 6.7e-235 817.4 577 71.1
Nitab4.5_0000130g0170 Nicotiana tabacum HOM05D006660 ORTHO05D008184 2.6e-234 815.5 570 70.2
Eucgr.K00713 Eucalyptus grandis HOM05D006660 ORTHO05D008184 3.3e-234 815.1 573 70.5
CAN.G784.8 Capsicum annuum HOM05D006660 ORTHO05D008184 1.3e-233 813.1 561 70.9
Medtr3g082870 Medicago truncatula HOM05D006660 ORTHO05D008184 2.2e-233 812.4 558 71.9
TAR626G1025 Trochodendron aralioides HOM05D006660 ORTHO05D008184 3.7e-233 811.6 567 70.9
PSO541G2904 Papaver somniferum HOM05D006660 ORTHO05D008184 6.3e-233 810.8 574 69.0
Ciclev10014722m.g Citrus clementina HOM05D006660 ORTHO05D008184 8.2e-233 810.4 573 69.6
Solyc07g049590.3 Solanum lycopersicum HOM05D006660 ORTHO05D008184 1.8e-232 809.3 563 71.2
Sopen07g024990 Solanum pennellii HOM05D006660 ORTHO05D008184 2.6e-231 805.4 563 71.0
CANSAT64G1453 Cannabis sativa HOM05D006660 ORTHO05D008184 5.9e-231 804.3 565 70.1
PSO675G7408 Papaver somniferum HOM05D006660 ORTHO05D008184 1.7e-230 802.7 574 68.6
PGSC0003DMG400006428 Solanum tuberosum HOM05D006660 ORTHO05D008184 1.7e-230 802.7 562 71.0
CsaV3_2G034260 Cucumis sativus L. HOM05D006660 ORTHO05D008184 2.5e-229 798.9 567 69.8
MELO3C019360.2 Cucumis melo HOM05D006660 ORTHO05D008184 1.2e-228 796.6 575 68.9
Sed0019714 Sechium edule HOM05D006660 ORTHO05D008184 7.9e-228 793.9 581 68.0
ClCG02G009540 Citrullus lanatus HOM05D006660 ORTHO05D008184 3.0e-227 792.0 601 66.6
HanXRQChr10g0306331 Helianthus annuus HOM05D006660 ORTHO05D008184 5.2e-227 791.2 565 68.0
Lsat_1_v5_gn_5_124741 Lactuca sativa HOM05D006660 ORTHO05D008184 5.2e-227 791.2 549 70.3
Aqoxy1G02841 Aquilegia oxysepala HOM05D006660 ORTHO05D008184 6.7e-227 790.8 600 65.5
arahy.Tifrunner.gnm1.ann1.V90YU5 Arachis hypogaea HOM05D006660 ORTHO05D008184 1.5e-226 789.6 568 69.2
Sc20g0003860 Simmondsia chinensis HOM05D006660 ORTHO05D008184 1.5e-226 789.6 570 69.3
Cc10_g08860 Coffea canephora HOM05D006660 ORTHO05D008184 3.3e-226 788.5 563 69.6
Gohir.A07G086100 Gossypium hirsutum HOM05D006660 ORTHO05D008184 3.3e-226 788.5 573 69.1
TPR.G22464 Trifolium pratense HOM05D006660 ORTHO05D008184 3.3e-226 788.5 548 71.0
DCAR_019721 Daucus carota HOM05D006660 ORTHO05D008184 1.3e-225 786.6 566 68.7
arahy.Tifrunner.gnm1.ann1.7S53TL Arachis hypogaea HOM05D006660 ORTHO05D008184 1.7e-225 786.2 565 69.2
arahy.Tifrunner.gnm1.ann1.GN08CG Arachis hypogaea HOM05D006660 ORTHO05D008184 1.7e-225 786.2 565 69.2
Ca_16352_v3 Cicer arietinum L. HOM05D006660 ORTHO05D008184 3.7e-225 785.0 560 70.0
AUR62015095 Chenopodium quinoa HOM05D006660 ORTHO05D008184 2.9e-222 775.4 567 67.7
Psat5g103920 Pisum sativum HOM05D006660 ORTHO05D008184 3.8e-222 775.0 591 66.5
Glyma.20G057100 Glycine max HOM05D006660 ORTHO05D008184 1.5e-221 773.1 567 69.1
MSTRG.14936 Avicennia marina HOM05D006660 ORTHO05D008184 3.2e-221 771.9 565 66.4
Lj6g0000837 Lotus japonicus HOM05D006660 ORTHO05D008184 3.2e-221 771.9 549 70.1
HPP92_017850 Vanilla planifolia HOM05D006660 ORTHO05D008184 4.2e-221 771.5 561 67.7
EL10Ac3g05658 Beta vulgaris HOM05D006660 ORTHO05D008184 1.0e-219 766.9 572 65.9
COL.COLO4_35986 Corchorus olitorius HOM05D006660 ORTHO05D008184 1.4e-219 766.5 581 67.1
SGA_v2.0_scaffold73G24530 Striga asiatica HOM05D006660 ORTHO05D008184 3.3e-218 761.9 568 66.4
Ah.14g082930 Amaranthus hybridus HOM05D006660 ORTHO05D008184 2.4e-216 755.7 563 66.6
Migut.M00006 Erythranthe guttata HOM05D006660 ORTHO05D008184 2.4e-216 755.7 569 67.3
FAN09G0285 Fragaria x ananassa HOM05D006660 ORTHO05D008184 2.7e-215 752.3 579 66.5
AUR62017555 Chenopodium quinoa HOM05D006660 ORTHO05D008184 7.5e-210 734.2 625 60.8
Zm00001eb281240 Zea mays HOM05D006660 ORTHO05D008184 1.0e-203 713.8 566 63.6
Os06g0318200 Oryza sativa ssp. japonica HOM05D006660 ORTHO05D008184 2.3e-203 712.6 562 63.9
ECA234G1491 Erigeron canadensis HOM05D006660 ORTHO05D008184 2.3e-198 696.0 549 65.0
Haze_12725 Corylus avellana HOM05D006660 ORTHO05D008184 2.6e-194 682.6 466 71.2
SEGI_29705 Sequoiadendron giganteum HOM05D006660 ORTHO05D008184 5.6e-189 664.8 650 54.2
CiPaw.04G193900 Carya illinoinensis HOM05D006660 ORTHO05D008184 1.6e-188 663.3 470 69.8
Cpa.g.sc132.76 Carica papaya HOM05D006660 ORTHO05D008184 4.7e-180 635.2 461 69.0
vmacro09381 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 6.2e-172 608.2 424 72.6
Mapoly0031s0110 Marchantia polymorpha HOM05D006660 ORTHO05D008184 1.4e-171 607.1 635 51.7
Lalb_Chr24g0402731 Lupinus albus HOM05D006660 ORTHO05D008184 3.2e-168 595.9 418 71.3
Pp3c5_19510 Physcomitrium patens HOM05D006660 ORTHO05D008184 1.5e-165 587.0 633 50.1
Pp3c5_19514 Physcomitrium patens HOM05D006660 ORTHO05D008184 1.5e-165 587.0 633 50.1
Gohir.D07G091200 Gossypium hirsutum HOM05D006660 ORTHO05D008184 3.1e-163 579.3 415 68.2
VMungo1309G1541 Vigna mungo HOM05D006660 ORTHO05D008184 9.3e-160 567.8 450 65.3
MD17G1109800 Malus domestica HOM05D006660 ORTHO05D008184 1.0e-158 564.3 552 54.7
Dinv07831 Davidia involucrata HOM05D006660 ORTHO05D008184 5.6e-157 558.5 410 65.9
CDE07G0400 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 7.3e-157 558.1 394 70.1
ATR0712G111 Amborella trichopoda HOM05D006660 ORTHO05D008184 3.1e-155 552.7 429 65.3
Oeu040482.1 Olea europaea HOM05D006660 ORTHO05D008184 7.6e-154 548.1 399 67.9
SMO353G0185 Selaginella moellendorffii HOM05D006660 ORTHO05D008184 1.8e-150 537.0 523 52.6
Atru.chr6.3318 Acer truncatum HOM05D006660 ORTHO05D008184 1.5e-146 523.9 399 66.2
Lj8A132T54 Lonicera japonica HOM05D006660 ORTHO05D008184 1.6e-132 477.2 306 73.2
GSVIVG01030415001 Vitis vinifera HOM05D006660 ORTHO05D008184 8.7e-126 454.9 304 71.1
AagrBONN_evm.TU.Sc2ySwM_344.2917 Anthoceros agrestis HOM05D006660 ORTHO05D008184 4.3e-125 452.6 524 47.9
CBR_g47999 Chara braunii HOM05D006660 ORTHO05D008184 3.2e-112 409.8 658 37.7
Hund08409 Selenicereus undatus HOM05D006660 ORTHO05D008184 1.2e-111 407.9 316 63.6
Lj8C132T7 Lonicera japonica HOM05D006660 ORTHO05D008184 6.3e-100 369.0 232 79.3
GSVIVG01030416001 Vitis vinifera HOM05D006660 ORTHO05D008184 3.3e-88 330.1 197 82.7
CDE04G2012 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 4.3e-80 303.1 501 38.9
Oeu040483.1 Olea europaea HOM05D006660 ORTHO05D008184 1.1e-67 261.9 162 79.6
AagrBONN_evm.TU.Sc2ySwM_228.2541 Anthoceros agrestis HOM05D006660 ORTHO05D008184 4.9e-60 236.5 419 35.3
CDE07G1994 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 2.4e-59 234.2 142 75.4
ATR0712G102 Amborella trichopoda HOM05D006660 ORTHO05D008184 3.3e-56 223.8 142 72.5
Phvul.004G085870 Phaseolus vulgaris HOM05D006660 ORTHO05D008184 2.1e-55 221.1 114 88.6
VMungo1309G0792 Vigna mungo HOM05D006660 ORTHO05D008184 1.5e-53 214.9 126 80.2
Lalb_Chr24g0402711 Lupinus albus HOM05D006660 ORTHO05D008184 7.6e-45 186.0 104 78.8
Atru.chr6.3319 Acer truncatum HOM05D006660 ORTHO05D008184 4.3e-40 170.2 159 57.2
Cpa.g.sc987.1 Carica papaya HOM05D006660 ORTHO05D008184 9.6e-40 169.1 110 76.4
vmacro09380 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 1.8e-30 138.3 162 46.3
HanXRQChr08g0218831 Helianthus annuus HOM05D006660 ORTHO05D008184 3.9e-25 120.6 67 80.6
CDE04G2605 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 4.3e-16 90.5 54 74.1
Cfa027280 Carpinus fangiana HOM05D006660 ORTHO05D008184 3.4e-13 80.9 158 34.2
Cre12.g532900 Chlamydomonas reinhardtii HOM05D009399 ORTHO05D011328 7.4e-08 63.2 146 30.1
Zm00001eb418740 Zea mays HOM05D000563 ORTHO05D442000 1.7e-07 62.0 102 35.3
Cre09.g401219 Chlamydomonas reinhardtii HOM05D009399 ORTHO05D011328 3.7e-07 60.8 165 27.3
Os03g0792500 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 6.3e-07 60.1 189 27.0
Cre04.g212100 Chlamydomonas reinhardtii HOM05D009399 ORTHO05D011328 1.1e-06 59.3 131 29.8
Os08g0198300 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 1.1e-06 59.3 175 27.4
Os08g0226800 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 1.8e-06 58.5 83 37.3
Os11g0630700 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 4.1e-06 57.4 156 28.8
Zm00001eb274310 Zea mays HOM05D000563 ORTHO05D000536 5.3e-06 57.0 129 31.0
CBR_g46594 Chara braunii HOM05D002203 ORTHO05D002647 6.9e-06 56.6 163 25.2
Pp3c11_17010 Physcomitrium patens HOM05D002203 ORTHO05D002647 9.1e-06 56.2 90 30.0


User provided reference genes

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