Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03181 Brassica carinata HOM05D002799 ORTHO05D007076 8.6e-232 806.6 399 100.0
BolC3t17806H Brassica oleracea HOM05D002799 ORTHO05D007076 8.6e-232 806.6 399 100.0
C03p55340 Brassica napus HOM05D002799 ORTHO05D007076 5.6e-231 803.9 399 99.7
A03p44540 Brassica napus HOM05D002799 ORTHO05D007076 2.0e-220 768.8 405 96.3
BraA03t13587Z Brassica rapa HOM05D002799 ORTHO05D007076 4.9e-219 764.2 413 94.7
BcaB08g34494 Brassica carinata HOM05D002799 ORTHO05D007076 1.3e-187 659.8 406 86.9
Sp3g23560 Schrenkiella parvula HOM05D002799 ORTHO05D007076 1.9e-183 646.0 415 82.7
AT2G04940 Arabidopsis thaliana HOM05D002799 ORTHO05D007076 2.2e-163 579.3 407 75.2
Thhalv10002559m.g Eutrema salsugineum HOM05D002799 ORTHO05D007076 4.2e-162 575.1 407 76.2
AL3G42700 Arabidopsis lyrata HOM05D002799 ORTHO05D007076 2.8e-158 562.4 404 74.5
Carub.0003s2662 Capsella rubella HOM05D002799 ORTHO05D007076 4.8e-158 561.6 402 75.1
CARHR102970 Cardamine hirsuta HOM05D002799 ORTHO05D007076 4.8e-158 561.6 400 74.5
Aa31LG3G2760 Aethionema arabicum HOM05D002799 ORTHO05D007076 1.7e-134 483.4 393 66.4
CSS0010295 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D007076 7.0e-133 478.0 357 64.4
GSVIVG01024449001 Vitis vinifera HOM05D002799 ORTHO05D007076 6.5e-131 471.5 361 65.9
Duzib211G0014 Durio zibethinus HOM05D002799 ORTHO05D007076 1.5e-130 470.3 366 65.3
COL.COLO4_24619 Corchorus olitorius HOM05D002799 ORTHO05D007076 4.2e-130 468.8 392 60.7
Atru.chr12.2008 Acer truncatum HOM05D002799 ORTHO05D007076 5.5e-130 468.4 321 71.7
THA.LOC104815357 Tarenaya hassleriana HOM05D002799 ORTHO05D007076 3.6e-129 465.7 433 61.0
Gohir.A09G055000 Gossypium hirsutum HOM05D002799 ORTHO05D007076 8.0e-129 464.5 373 65.1
Prupe.2G323900 Prunus persica HOM05D002799 ORTHO05D007076 8.0e-129 464.5 330 70.0
Gorai.006G053300 Gossypium raimondii HOM05D002799 ORTHO05D007076 3.0e-128 462.6 318 72.0
Gohir.D09G053900 Gossypium hirsutum HOM05D002799 ORTHO05D007076 2.0e-127 459.9 317 71.0
QL09p025824 Quercus lobata HOM05D002799 ORTHO05D007076 2.0e-127 459.9 317 71.6
Thecc.08G172500 Theobroma cacao HOM05D002799 ORTHO05D007076 2.6e-127 459.5 322 70.5
Actinidia08737 Actinidia chinensis HOM05D002799 ORTHO05D007076 3.4e-127 459.1 358 63.1
Ciclev10001355m.g Citrus clementina HOM05D002799 ORTHO05D007076 4.4e-127 458.8 352 66.2
Manes.08G164400 Manihot esculenta HOM05D002799 ORTHO05D007076 7.5e-127 458.0 320 72.5
MD01G1233700 Malus domestica HOM05D002799 ORTHO05D007076 9.8e-127 457.6 334 67.7
Medtr4g077510 Medicago truncatula HOM05D002799 ORTHO05D007076 1.3e-126 457.2 315 72.4
CiPaw.05G237100 Carya illinoinensis HOM05D002799 ORTHO05D007076 4.9e-126 455.3 318 69.8
Eucgr.K00095 Eucalyptus grandis HOM05D002799 ORTHO05D007076 4.9e-126 455.3 324 68.5
Lalb_Chr03g0024441 Lupinus albus HOM05D002799 ORTHO05D007076 6.3e-126 454.9 321 71.3
Phvul.011G021500 Phaseolus vulgaris HOM05D002799 ORTHO05D007076 1.4e-125 453.8 327 68.8
CsaV3_4G004510 Cucumis sativus L. HOM05D002799 ORTHO05D007076 4.1e-125 452.2 317 70.3
Potri.015G079500 Populus trichocarpa HOM05D002799 ORTHO05D007076 5.4e-125 451.8 315 70.8
Lj3g0008833 Lotus japonicus HOM05D002799 ORTHO05D007076 1.6e-124 450.3 326 69.3
TWI34G0554 Tripterygium wilfordii HOM05D002799 ORTHO05D007076 2.0e-124 449.9 358 65.1
Sed0006194 Sechium edule HOM05D002799 ORTHO05D007076 3.5e-124 449.1 322 69.3
Ca_29855_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 4.5e-124 448.7 324 69.1
MSTRG.11401 Avicennia marina HOM05D002799 ORTHO05D007076 7.7e-124 448.0 319 69.3
VMungo1127G2112 Vigna mungo HOM05D002799 ORTHO05D007076 7.7e-124 448.0 328 68.0
Dinv17267 Davidia involucrata HOM05D002799 ORTHO05D007076 2.9e-123 446.0 382 61.3
TAR374G0973 Trochodendron aralioides HOM05D002799 ORTHO05D007076 3.8e-123 445.7 326 66.3
arahy.Tifrunner.gnm1.ann1.IZ2599 Arachis hypogaea HOM05D002799 ORTHO05D007076 4.2e-122 442.2 326 67.8
arahy.Tifrunner.gnm1.ann1.ZMX436 Arachis hypogaea HOM05D002799 ORTHO05D007076 4.2e-122 442.2 326 67.8
CAN.G289.47 Capsicum annuum HOM05D002799 ORTHO05D007076 2.1e-121 439.9 339 64.3
SalBow5G5430 Salvia bowleyana HOM05D002799 ORTHO05D007076 2.8e-121 439.5 321 67.9
Glyma.12G019100 Glycine max HOM05D002799 ORTHO05D007076 8.0e-121 438.0 330 67.0
FvH4_7g33590 Fragaria vesca HOM05D002799 ORTHO05D007076 1.4e-120 437.2 312 67.6
Cc03_g15080 Coffea canephora HOM05D002799 ORTHO05D007076 4.0e-120 435.6 317 68.5
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 5.2e-120 435.3 306 67.0
FAN10G3482 Fragaria x ananassa HOM05D002799 ORTHO05D007076 6.8e-120 434.9 323 64.7
Sopen03g002460 Solanum pennellii HOM05D002799 ORTHO05D007076 8.9e-120 434.5 338 64.5
Ca_04931_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 1.5e-119 433.7 314 69.1
Solyc03g006460.4 Solanum lycopersicum HOM05D002799 ORTHO05D007076 2.6e-119 433.0 338 64.5
RcHm_v2.0_Chr1g0383851 Rosa chinensis HOM05D002799 ORTHO05D007076 3.4e-119 432.6 252 79.4
CANSAT21G1863 Cannabis sativa HOM05D002799 ORTHO05D007076 1.3e-118 430.6 331 65.3
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.3e-118 430.6 306 66.7
vmacro06500 Vaccinium macrocarpon HOM05D002799 ORTHO05D007076 2.2e-118 429.9 323 66.6
MD07G1305800 Malus domestica HOM05D002799 ORTHO05D007076 1.8e-117 426.8 338 62.1
DCAR_009002 Daucus carota HOM05D002799 ORTHO05D007076 4.1e-117 425.6 344 62.8
ATR0829G228 Amborella trichopoda HOM05D002799 ORTHO05D007076 7.0e-117 424.9 324 64.2
Aqoxy3G02040 Aquilegia oxysepala HOM05D002799 ORTHO05D007076 7.0e-117 424.9 304 68.1
EL10Ac3g05098 Beta vulgaris HOM05D002799 ORTHO05D007076 1.2e-116 424.1 304 68.1
Migut.I00118 Erythranthe guttata HOM05D002799 ORTHO05D007076 1.2e-116 424.1 345 63.5
PSO782G0547 Papaver somniferum HOM05D002799 ORTHO05D007076 2.0e-116 423.3 336 63.4
PGSC0003DMG400012810 Solanum tuberosum HOM05D002799 ORTHO05D007076 2.0e-116 423.3 343 62.4
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 3.5e-116 422.5 313 65.5
PSO063G7569 Papaver somniferum HOM05D002799 ORTHO05D007076 6.6e-115 418.3 332 64.2
PGR004G1694 Punica granatum HOM05D002799 ORTHO05D007076 4.3e-114 415.6 383 57.7
AUR62028151 Chenopodium quinoa HOM05D002799 ORTHO05D007076 5.6e-114 415.2 299 67.9
Nn1g02009 Nelumbo nucifera HOM05D002799 ORTHO05D007076 5.6e-114 415.2 324 63.0
Ah.13g072670 Amaranthus hybridus HOM05D002799 ORTHO05D007076 9.5e-114 414.5 309 66.7
MBI04_g21139_MAGBIO Magnolia biondii HOM05D002799 ORTHO05D007076 1.2e-113 414.1 314 63.7
Hma1.2p1_0758F.1_g213600 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 3.1e-112 409.5 246 78.5
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 2.0e-111 406.8 317 63.7
HanXRQChr04g0105251 Helianthus annuus HOM05D002799 ORTHO05D007076 3.4e-111 406.0 334 64.1
HPP92_015127 Vanilla planifolia HOM05D002799 ORTHO05D007076 4.4e-111 405.6 320 61.2
MELO3C017614.2 Cucumis melo HOM05D002799 ORTHO05D007076 1.1e-109 401.0 347 61.1
ClCG07G017310 Citrullus lanatus HOM05D002799 ORTHO05D007076 1.6e-108 397.1 318 64.5
ECA233G3743 Erigeron canadensis HOM05D002799 ORTHO05D007076 3.5e-108 396.0 303 64.0
Lj1C1032G6 Lonicera japonica HOM05D002799 ORTHO05D007076 3.5e-108 396.0 342 60.8
Oeu014983.2 Olea europaea HOM05D002799 ORTHO05D007076 1.9e-106 390.2 348 59.2
Lsat_1_v5_gn_8_3761 Lactuca sativa HOM05D002799 ORTHO05D007076 4.7e-105 385.6 325 61.8
Zm00001eb430250 Zea mays HOM05D002799 ORTHO05D007076 1.1e-104 384.4 324 58.6
AUR62005914 Chenopodium quinoa HOM05D002799 ORTHO05D007076 6.0e-100 368.6 295 63.7
unitig_62.g23564 Utricularia gibba HOM05D002799 ORTHO05D007076 3.9e-99 365.9 324 59.3
Hund09770 Selenicereus undatus HOM05D002799 ORTHO05D007076 4.3e-98 362.5 335 58.5
Os04g0599400 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 9.5e-98 361.3 316 57.6
Psat7g171360 Pisum sativum HOM05D002799 ORTHO05D007076 9.5e-98 361.3 308 62.0
Solyc03g006452.1 Solanum lycopersicum HOM05D002799 ORTHO05D007076 4.9e-94 349.0 300 60.7
Os02g0238500 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 1.0e-91 341.3 230 69.1
Cpa.g.sc67.53 Carica papaya HOM05D002799 ORTHO05D007076 1.5e-90 337.4 192 78.6
AagrBONN_evm.TU.Sc2ySwM_368.1885 Anthoceros agrestis HOM05D002799 ORTHO05D007076 8.1e-89 331.6 331 52.0
Lj2A621G40 Lonicera japonica HOM05D002799 ORTHO05D007076 1.7e-86 323.9 254 61.0
Sc13g0010800 Simmondsia chinensis HOM05D002799 ORTHO05D007076 7.8e-84 315.1 246 62.6
Actinidia34299 Actinidia chinensis HOM05D002799 ORTHO05D007076 7.3e-82 308.5 193 74.6
Pp3c5_23880 Physcomitrium patens HOM05D002799 ORTHO05D007076 1.3e-81 307.8 321 49.8
Pp3c3_18900 Physcomitrium patens HOM05D002799 ORTHO05D007076 9.0e-80 301.6 281 53.4
Mapoly0041s0072 Marchantia polymorpha HOM05D002799 ORTHO05D007076 6.0e-76 288.9 269 52.8
CBR_g26239 Chara braunii HOM05D002799 ORTHO05D007076 1.3e-73 281.2 330 44.2
SMO196G0267 Selaginella moellendorffii HOM05D002799 ORTHO05D007076 3.2e-69 266.5 196 61.7
Cfa015896 Carpinus fangiana HOM05D002799 ORTHO05D007076 8.7e-67 258.5 349 47.6
Lj3A801T16 Lonicera japonica HOM05D002799 ORTHO05D007076 1.5e-63 247.7 230 50.9
Zm00001eb071960 Zea mays HOM05D002799 ORTHO05D007076 4.8e-57 226.1 130 76.2
FvH4_7g33592 Fragaria vesca HOM05D002799 ORTHO05D007076 6.9e-56 222.2 123 81.3
Sabra15G0103700 Salix brachista HOM05D002799 ORTHO05D007076 2.6e-55 220.3 292 45.5
Hma1.2p1_0758F.1_g213590 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 3.9e-51 206.5 173 63.0
Sabra15G0103800 Salix brachista HOM05D002799 ORTHO05D007076 3.4e-47 193.4 114 80.7
FvH4_7g33593 Fragaria vesca HOM05D002799 ORTHO05D007076 3.8e-46 189.9 168 56.0
Peaxi162Scf00195g01110 Petunia axillaris HOM05D002799 ORTHO05D007076 9.4e-45 185.3 112 77.7
Haze_00592 Corylus avellana HOM05D002799 ORTHO05D007076 1.8e-40 171.0 186 53.2
Nitab4.5_0000701g0060 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.1e-37 161.8 173 53.8
PRCOL_00006278 Prasinoderma coloniale HOM05D002799 ORTHO05D007076 1.6e-36 157.9 270 38.5
SEGI_10035 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 2.1e-36 157.5 99 73.7
Nitab4.5_0000793g0030 Nicotiana tabacum HOM05D002799 ORTHO05D007076 9.7e-34 148.7 173 50.9
Cre06.g267850 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D007076 1.7e-33 147.9 198 39.4
TPR.G19958 Trifolium pratense HOM05D002799 ORTHO05D007076 1.4e-27 128.3 62 88.7
Cfa023729 Carpinus fangiana HOM05D002799 ORTHO05D007076 8.2e-25 119.0 302 29.1
TPR.G21490 Trifolium pratense HOM05D002799 ORTHO05D007076 3.5e-23 113.6 73 75.3
HanXRQChr15g0477781 Helianthus annuus HOM05D002799 ORTHO05D007076 5.0e-22 109.8 99 61.6
Zm00001eb315690 Zea mays HOM05D002799 ORTHO05D007076 1.5e-21 108.2 56 78.6
Haze_00593 Corylus avellana HOM05D002799 ORTHO05D007076 4.0e-19 100.1 61 80.3
Nitab4.5_0000793g0020 Nicotiana tabacum HOM05D002799 ORTHO05D007076 9.8e-18 95.5 147 41.5
Lj2C621T3 Lonicera japonica HOM05D002799 ORTHO05D007076 1.7e-17 94.7 63 73.0
Nitab4.5_0000701g0050 Nicotiana tabacum HOM05D002799 ORTHO05D007076 2.8e-17 94.0 195 37.4
QL03p008982 Quercus lobata HOM05D000009 ORTHO05D000008 4.8e-17 93.2 77 63.6
Actinidia04566 Actinidia chinensis HOM05D002799 ORTHO05D007076 2.4e-16 90.9 185 36.2
SEGI_38885 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 2.4e-16 90.9 78 57.7
FAN10G3554 Fragaria x ananassa HOM05D012649 ORTHO05D007076 5.0e-14 83.2 145 37.9
QL03p009165 Quercus lobata HOM05D000009 ORTHO05D000008 6.1e-12 76.3 53 71.7
VMungo1127G1706 Vigna mungo HOM05D002799 ORTHO05D007076 5.7e-10 69.7 109 38.5
SHI36546 Sapria himalayana HOM05D000107 ORTHO05D000233 8.3e-09 65.9 40 77.5
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 3.1e-08 63.9 40 75.0
Cpa.g.sc67.52 Carica papaya HOM05D002799 ORTHO05D007076 2.9e-06 57.4 113 38.1


User provided reference genes

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