Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03159 Brassica carinata HOM05D008158 ORTHO05D010323 2.2e-40 169.1 129 100.0
A03p44640 Brassica napus HOM05D008158 ORTHO05D010323 4.2e-39 164.9 129 98.4
BcaB08g34503 Brassica carinata HOM05D008158 ORTHO05D010323 9.4e-39 163.7 129 97.7
C03p55470 Brassica napus HOM05D008158 ORTHO05D010323 2.7e-38 162.2 129 93.0
AT2G05540 Arabidopsis thaliana HOM05D008158 ORTHO05D010323 2.4e-26 122.5 136 75.7
Thhalv10002728m.g Eutrema salsugineum HOM05D008158 ORTHO05D010323 4.0e-21 105.1 129 75.2
THA.LOC104826607 Tarenaya hassleriana HOM05D008158 ORTHO05D010323 4.4e-20 101.7 129 74.4
BraA03t13597Z Brassica rapa HOM05D008158 ORTHO05D010323 3.5e-17 92.0 151 64.2
CARHR103240 Cardamine hirsuta HOM05D008158 ORTHO05D010323 3.0e-16 89.0 122 65.6
AL3G42960 Arabidopsis lyrata HOM05D008158 ORTHO05D010323 5.2e-13 78.2 126 65.1
THA.LOC104826606 Tarenaya hassleriana HOM05D008158 ORTHO05D010323 1.5e-12 76.6 134 61.9
EL10Ac9g22778 Beta vulgaris HOM05D008132 ORTHO05D005763 2.0e-12 76.3 127 65.4
AT2G05530 Arabidopsis thaliana HOM05D008158 ORTHO05D010323 2.9e-11 72.4 121 67.8
Thhalv10017460m.g Eutrema salsugineum HOM05D008158 ORTHO05D010323 1.1e-10 70.5 121 57.0
AL3G42860 Arabidopsis lyrata HOM05D008158 ORTHO05D010323 4.1e-10 68.6 121 66.9
THA.LOC104815348 Tarenaya hassleriana HOM05D008158 ORTHO05D010323 4.1e-10 68.6 130 51.5
Cpa.g.sc132.70 Carica papaya HOM05D008132 ORTHO05D005763 2.0e-09 66.2 131 52.7
Cpa.g.sc132.73 Carica papaya HOM05D008132 ORTHO05D005763 2.0e-09 66.2 131 52.7
CARHR103210 Cardamine hirsuta HOM05D008158 ORTHO05D010323 2.7e-09 65.9 121 40.5
BcaC01g03160 Brassica carinata HOM05D008158 ORTHO05D010323 3.5e-09 65.5 121 55.4
Medtr5g084330 Medicago truncatula HOM05D009657 ORTHO05D005763 6.0e-09 64.7 129 50.4
Carub.0003s2686 Capsella rubella HOM05D008158 ORTHO05D010323 1.0e-08 63.9 125 66.4
Nn1g09274 Nelumbo nucifera HOM05D008132 ORTHO05D005763 1.0e-08 63.9 127 56.7
Oeu022674.1 Olea europaea HOM05D008132 ORTHO05D005763 1.3e-08 63.5 124 58.9
Aa31LG1G19090 Aethionema arabicum HOM05D008158 ORTHO05D010323 2.3e-08 62.8 130 60.8
C03p55460 Brassica napus HOM05D008158 ORTHO05D010323 2.3e-08 62.8 128 64.8
BolC3t17821H Brassica oleracea HOM05D008158 ORTHO05D010323 2.3e-08 62.8 128 64.8
BolC3t17822H Brassica oleracea HOM05D008158 ORTHO05D010323 2.3e-08 62.8 48 79.2
AT2G05380 Arabidopsis thaliana HOM05D008158 ORTHO05D010323 3.0e-08 62.4 121 62.0
A03p44630 Brassica napus HOM05D008158 ORTHO05D010323 3.0e-08 62.4 139 59.0
Nn1g09275 Nelumbo nucifera HOM05D008132 ORTHO05D005763 8.6e-08 60.8 127 58.3
C04p60060 Brassica napus HOM05D008158 ORTHO05D010323 1.5e-07 60.1 121 63.6
BolC4t27509H Brassica oleracea HOM05D008158 ORTHO05D010323 1.5e-07 60.1 121 63.6
CANSAT56G4537 Cannabis sativa HOM05D008132 ORTHO05D005763 1.5e-07 60.1 129 59.7
Migut.G01155 Erythranthe guttata HOM05D008132 ORTHO05D005763 1.5e-07 60.1 134 60.4
QL08p029862 Quercus lobata HOM05D008132 ORTHO05D005763 1.9e-07 59.7 133 56.4
COL.COLO4_04943 Corchorus olitorius HOM05D008132 ORTHO05D005763 2.5e-07 59.3 129 60.5
BraA03t13598Z Brassica rapa HOM05D008158 ORTHO05D010323 3.3e-07 58.9 138 60.1
Sp3g24050 Schrenkiella parvula HOM05D008158 ORTHO05D010323 3.3e-07 58.9 122 57.4
CAN.G2020.3 Capsicum annuum HOM05D012878 ORTHO05D005763 4.3e-07 58.5 126 52.4
Sp3g24030 Schrenkiella parvula HOM05D008158 ORTHO05D010323 5.6e-07 58.2 123 56.1
AT2G05520 Arabidopsis thaliana HOM05D008158 ORTHO05D010323 7.3e-07 57.8 149 56.4
arahy.Tifrunner.gnm1.ann1.5E44W3 Arachis hypogaea HOM05D008132 ORTHO05D005763 7.3e-07 57.8 123 46.3
BcaB08g34502 Brassica carinata HOM05D008158 ORTHO05D010323 7.3e-07 57.8 144 56.2
Sp3g24040 Schrenkiella parvula HOM05D008158 ORTHO05D010323 7.3e-07 57.8 134 60.4
BraA04t17885Z Brassica rapa HOM05D008158 ORTHO05D010323 9.5e-07 57.4 121 60.3
Thecc.01G186700 Theobroma cacao HOM05D008132 ORTHO05D005763 9.5e-07 57.4 132 53.8
Thecc.01G236900 Theobroma cacao HOM05D008132 ORTHO05D005763 9.5e-07 57.4 130 61.5
Cc03_g08950 Coffea canephora HOM05D008132 ORTHO05D005763 1.2e-06 57.0 133 63.9
Peaxi162Scf00286g00820 Petunia axillaris HOM05D008132 ORTHO05D005763 1.2e-06 57.0 125 38.4
Migut.G00827 Erythranthe guttata HOM05D008132 ORTHO05D005763 1.6e-06 56.6 137 57.7
Gohir.D07G195400 Gossypium hirsutum HOM05D008132 ORTHO05D005763 1.6e-06 56.6 140 58.6
Migut.G01096 Erythranthe guttata HOM05D008132 ORTHO05D005763 2.1e-06 56.2 128 55.5
Gorai.006G083000 Gossypium raimondii HOM05D008132 ORTHO05D005763 2.8e-06 55.8 139 54.0
AL3G42950 Arabidopsis lyrata HOM05D008158 ORTHO05D010323 3.6e-06 55.5 157 54.1
Carub.0003s2685 Capsella rubella HOM05D008158 ORTHO05D010323 3.6e-06 55.5 141 56.7
EL10Ac9g22777 Beta vulgaris HOM05D008132 ORTHO05D005763 4.7e-06 55.1 150 52.0
LjContig00357g0014262 Lotus japonicus HOM05D009657 ORTHO05D005763 4.7e-06 55.1 129 58.9
BcaB06g28391 Brassica carinata HOM05D008158 ORTHO05D010323 6.2e-06 54.7 121 58.7
A04p23590 Brassica napus HOM05D008158 ORTHO05D010323 6.2e-06 54.7 121 59.5
arahy.Tifrunner.gnm1.ann1.4VA7BX Arachis hypogaea HOM05D064469 ORTHO05D005763 8.1e-06 54.3 39 61.5
GSVIVG01030407001 Vitis vinifera HOM05D008132 ORTHO05D005763 8.1e-06 54.3 164 48.8


User provided reference genes

Program Settings