Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 5.4e-66 254.2 132 100.0
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 5.6e-63 244.2 133 97.0
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 5.6e-63 244.2 133 97.0
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 2.8e-62 241.9 131 96.9
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 2.8e-62 241.9 131 96.9
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 3.6e-62 241.5 132 94.7
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 1.4e-61 239.6 130 93.1
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 1.8e-61 239.2 132 93.9
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 1.8e-61 239.2 132 93.9
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 1.8e-61 239.2 132 93.9
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 2.6e-60 235.3 130 95.4
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 5.8e-60 234.2 130 91.5
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 5.1e-56 221.1 133 87.2
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.5e-55 219.5 133 88.0
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 2.0e-52 209.1 133 85.0
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 2.1e-49 199.1 133 80.5
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 7.9e-49 197.2 132 78.8
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 3.9e-48 194.9 133 82.0
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 7.4e-47 190.7 132 74.2
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 9.6e-47 190.3 129 80.6
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 1.6e-46 189.5 129 78.3
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 1.6e-46 189.5 130 79.2
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 3.7e-46 188.3 119 79.8
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 6.2e-46 187.6 129 79.8
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 6.2e-46 187.6 129 76.7
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 8.2e-46 187.2 133 80.5
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 8.2e-46 187.2 129 79.8
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 1.4e-45 186.4 130 77.7
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 2.4e-45 185.7 132 75.0
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 3.1e-45 185.3 119 79.0
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 5.3e-45 184.5 130 75.4
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 5.3e-45 184.5 130 75.4
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 6.9e-45 184.1 132 74.2
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 9.0e-45 183.7 132 73.5
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 9.0e-45 183.7 132 73.5
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 1.5e-44 183.0 121 77.7
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 2.0e-44 182.6 129 76.7
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 2.0e-44 182.6 129 76.7
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 2.0e-44 182.6 132 75.0
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 2.0e-44 182.6 132 75.8
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 3.4e-44 181.8 130 73.1
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 4.5e-44 181.4 122 74.6
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 5.8e-44 181.0 128 73.4
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 5.8e-44 181.0 130 73.1
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 5.8e-44 181.0 130 73.8
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 7.6e-44 180.6 130 72.3
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 1.0e-43 180.3 130 73.1
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 1.0e-43 180.3 122 75.4
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 1.3e-43 179.9 128 75.0
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 1.3e-43 179.9 129 76.0
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 1.3e-43 179.9 131 72.5
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 1.7e-43 179.5 133 72.2
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 2.2e-43 179.1 136 72.1
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 2.9e-43 178.7 132 71.2
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 2.9e-43 178.7 129 74.4
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 2.9e-43 178.7 129 75.2
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 4.9e-43 177.9 129 74.4
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 4.9e-43 177.9 120 75.0
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 4.9e-43 177.9 132 73.5
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 1.4e-42 176.4 130 75.4
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 1.4e-42 176.4 130 75.4
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 1.9e-42 176.0 132 70.5
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 2.5e-42 175.6 132 70.5
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 2.5e-42 175.6 132 69.7
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 2.5e-42 175.6 132 72.0
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 2.5e-42 175.6 123 74.0
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 3.2e-42 175.3 132 72.0
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 5.5e-42 174.5 120 75.0
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 7.1e-42 174.1 130 72.3
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 1.2e-41 173.3 132 68.9
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.6e-41 172.9 132 69.7
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 2.7e-41 172.2 130 71.5
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 4.6e-41 171.4 132 72.0
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 4.6e-41 171.4 129 72.1
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 6.0e-41 171.0 120 74.2
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 6.0e-41 171.0 117 74.4
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 7.9e-41 170.6 135 71.1
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 7.9e-41 170.6 128 70.3
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 2.3e-40 169.1 131 71.0
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 3.0e-40 168.7 132 71.2
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 3.0e-40 168.7 130 72.3
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 3.0e-40 168.7 132 68.2
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 3.0e-40 168.7 126 71.4
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 3.9e-40 168.3 125 72.0
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 5.1e-40 167.9 130 70.0
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 5.1e-40 167.9 132 65.9
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 8.7e-40 167.2 131 73.3
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 8.7e-40 167.2 132 66.7
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 1.1e-39 166.8 132 64.4
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.5e-39 166.4 132 68.9
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 1.5e-39 166.4 132 72.0
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 1.5e-39 166.4 129 70.5
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 4.3e-39 164.9 132 68.9
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 4.3e-39 164.9 131 69.5
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 5.7e-39 164.5 132 68.9
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 7.4e-39 164.1 134 66.4
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 7.4e-39 164.1 132 68.2
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 7.4e-39 164.1 132 68.9
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 1.3e-38 163.3 123 74.8
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.2e-38 162.5 134 70.1
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 2.2e-38 162.5 134 70.1
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 3.7e-38 161.8 105 81.0
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 6.3e-38 161.0 129 71.3
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 6.3e-38 161.0 134 69.4
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 8.2e-38 160.6 132 68.2
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 8.2e-38 160.6 128 71.1
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 8.2e-38 160.6 111 76.6
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 1.4e-37 159.8 132 66.7
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 1.8e-37 159.5 111 75.7
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 2.4e-37 159.1 125 68.0
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 2.4e-37 159.1 104 81.7
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 9.0e-37 157.1 111 75.7
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 9.0e-37 157.1 133 66.2
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 1.2e-36 156.8 133 67.7
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.2e-36 156.8 131 67.9
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.2e-36 156.8 131 67.9
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 1.2e-36 156.8 115 74.8
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.6e-36 155.6 136 66.9
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 5.9e-36 154.5 99 79.8
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 7.6e-36 154.1 83 88.0
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 1.0e-35 153.7 126 67.5
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 1.3e-35 153.3 126 67.5
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 1.3e-35 153.3 137 65.0
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 2.9e-35 152.1 126 66.7
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 3.8e-35 151.8 136 64.7
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 6.5e-35 151.0 83 90.4
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 1.4e-34 149.8 132 65.2
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 1.9e-34 149.4 134 63.4
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 5.5e-34 147.9 85 87.1
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 1.5e-31 139.8 83 83.1
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 3.3e-31 138.7 120 67.5
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 6.3e-30 134.4 84 79.8
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 6.3e-30 134.4 120 65.8
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 4.1e-29 131.7 109 65.1
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 2.0e-28 129.4 131 57.3
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 3.4e-28 128.6 113 62.8
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 2.5e-26 122.5 121 56.2
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 5.5e-26 121.3 78 78.2
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.2e-25 120.2 69 88.4
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 1.0e-24 117.1 132 56.1
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 3.0e-24 115.5 97 61.9
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 2.8e-22 109.0 97 60.8
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 3.7e-22 108.6 131 56.5
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 4.8e-22 108.2 126 53.2
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 1.8e-21 106.3 133 53.4
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 3.1e-21 105.5 69 76.8
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 6.5e-19 97.8 97 57.7
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 1.9e-18 96.3 95 57.9
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 3.2e-18 95.5 106 54.7
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 2.1e-17 92.8 97 57.7
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 4.7e-17 91.7 46 100.0
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 8.0e-17 90.9 71 64.8
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 2.6e-15 85.9 100 48.0
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 1.7e-14 83.2 65 61.5
ATR0733G110 Amborella trichopoda HOM05D004828 ORTHO05D005713 2.2e-06 56.2 33 78.8


User provided reference genes

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