Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03128 Brassica carinata HOM05D004469 ORTHO05D005429 3.1e-202 708.4 387 100.0
BolC3t17859H Brassica oleracea HOM05D004469 ORTHO05D005429 3.1e-202 708.4 387 100.0
C03p55780 Brassica napus HOM05D004469 ORTHO05D005429 9.0e-202 706.8 387 99.7
A03p44900 Brassica napus HOM05D004469 ORTHO05D005429 2.8e-195 685.3 387 96.6
BraA03t13626Z Brassica rapa HOM05D004469 ORTHO05D005429 4.0e-194 681.4 390 96.2
BcaB08g34526 Brassica carinata HOM05D004469 ORTHO05D005429 6.0e-182 641.0 410 87.3
Sp3g26680 Schrenkiella parvula HOM05D004469 ORTHO05D005429 9.1e-170 600.5 392 86.0
Thhalv10022623m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 4.7e-158 561.6 403 80.6
AL3G45030 Arabidopsis lyrata HOM05D004469 ORTHO05D005429 1.1e-154 550.4 402 78.9
AT2G12550 Arabidopsis thaliana HOM05D004469 ORTHO05D005429 8.5e-152 540.8 394 77.9
Thhalv10001944m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 1.1e-151 540.4 403 78.2
CARHR105080 Cardamine hirsuta HOM05D004469 ORTHO05D005429 6.1e-150 534.6 386 76.9
Aa31sc54G60 Aethionema arabicum HOM05D004469 ORTHO05D005429 2.0e-148 529.6 387 73.9
Carub.0003s2782 Capsella rubella HOM05D004469 ORTHO05D005429 6.5e-144 514.6 400 71.0
THA.LOC104808947 Tarenaya hassleriana HOM05D004469 ORTHO05D005429 9.5e-127 457.6 403 61.5
Thecc.09G137700 Theobroma cacao HOM05D004469 ORTHO05D005429 1.3e-107 394.0 386 58.0
Cpa.g.sc46.70 Carica papaya HOM05D004469 ORTHO05D005429 1.1e-106 391.0 391 54.2
Prupe.7G257500 Prunus persica HOM05D004469 ORTHO05D005429 5.4e-106 388.7 386 55.2
CiPaw.04G177500 Carya illinoinensis HOM05D004469 ORTHO05D005429 7.1e-106 388.3 395 52.9
Atru.chr7.2015 Acer truncatum HOM05D004469 ORTHO05D005429 3.5e-105 386.0 385 53.8
Ca_03095_v3 Cicer arietinum L. HOM05D004469 ORTHO05D005429 4.6e-105 385.6 384 52.3
Glyma.09G091700 Glycine max HOM05D004469 ORTHO05D005429 6.0e-105 385.2 386 52.6
Cfa002260 Carpinus fangiana HOM05D004469 ORTHO05D005429 1.3e-104 384.0 384 52.9
Medtr2g450730 Medicago truncatula HOM05D004469 ORTHO05D005429 3.9e-104 382.5 382 52.1
arahy.Tifrunner.gnm1.ann1.2E9WSC Arachis hypogaea HOM05D004469 ORTHO05D005429 5.1e-104 382.1 388 52.3
Lj6g0024161 Lotus japonicus HOM05D004469 ORTHO05D005429 8.6e-104 381.3 391 51.9
Glyma.15G198300 Glycine max HOM05D004469 ORTHO05D005429 1.5e-103 380.6 386 51.6
arahy.Tifrunner.gnm1.ann1.K75BJP Arachis hypogaea HOM05D004469 ORTHO05D005429 1.9e-103 380.2 386 52.6
Gorai.004G109600 Gossypium raimondii HOM05D004469 ORTHO05D005429 2.5e-103 379.8 390 55.6
COL.COLO4_33364 Corchorus olitorius HOM05D004469 ORTHO05D005429 4.3e-103 379.0 386 54.7
Gohir.D08G101600 Gossypium hirsutum HOM05D004469 ORTHO05D005429 5.6e-103 378.6 390 55.6
Ciclev10007887m.g Citrus clementina HOM05D004469 ORTHO05D005429 2.1e-102 376.7 387 53.7
Gohir.A08G091100 Gossypium hirsutum HOM05D004469 ORTHO05D005429 2.8e-102 376.3 388 55.2
QL02p090812 Quercus lobata HOM05D004469 ORTHO05D005429 2.8e-102 376.3 400 51.8
RcHm_v2.0_Chr2g0087051 Rosa chinensis HOM05D004469 ORTHO05D005429 4.7e-102 375.6 389 55.0
Potri.018G118143 Populus trichocarpa HOM05D004469 ORTHO05D005429 6.2e-102 375.2 390 53.6
Haze_25443 Corylus avellana HOM05D004469 ORTHO05D005429 1.4e-101 374.0 393 51.7
MD15G1162100 Malus domestica HOM05D004469 ORTHO05D005429 1.4e-101 374.0 390 51.5
Sabra06G0044100 Salix brachista HOM05D004469 ORTHO05D005429 3.1e-101 372.9 393 52.7
Eucgr.L03235 Eucalyptus grandis HOM05D004469 ORTHO05D005429 4.0e-101 372.5 381 53.3
Manes.14G119700 Manihot esculenta HOM05D004469 ORTHO05D005429 5.2e-101 372.1 381 54.1
Phvul.009G212100 Phaseolus vulgaris HOM05D004469 ORTHO05D005429 5.2e-101 372.1 387 51.7
RcHm_v2.0_Chr5g0061231 Rosa chinensis HOM05D004469 ORTHO05D005429 5.2e-101 372.1 400 52.2
FvH4_1g01990 Fragaria vesca HOM05D004469 ORTHO05D005429 6.8e-101 371.7 387 55.8
Lalb_Chr11g0073091 Lupinus albus HOM05D004469 ORTHO05D005429 2.0e-100 370.2 402 49.3
TWI32G1222 Tripterygium wilfordii HOM05D004469 ORTHO05D005429 5.8e-100 368.6 386 51.8
GSVIVG01012860001 Vitis vinifera HOM05D004469 ORTHO05D005429 7.6e-100 368.2 398 49.7
EL10Ac8g18788 Beta vulgaris HOM05D004469 ORTHO05D005429 2.2e-99 366.7 386 50.5
TAR625G0398 Trochodendron aralioides HOM05D004469 ORTHO05D005429 2.9e-99 366.3 382 51.3
Duzib187G0975 Durio zibethinus HOM05D004469 ORTHO05D005429 4.9e-99 365.5 403 51.9
Potri.006G061500 Populus trichocarpa HOM05D004469 ORTHO05D005429 6.4e-99 365.2 420 49.3
PGR102G2677 Punica granatum HOM05D004469 ORTHO05D005429 1.1e-98 364.4 396 50.0
CANSAT11G1945 Cannabis sativa HOM05D004469 ORTHO05D005429 1.9e-98 363.6 391 51.4
Dinv41443 Davidia involucrata HOM05D004469 ORTHO05D005429 1.9e-98 363.6 389 51.7
FAN28G2138 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.4e-98 363.2 403 53.8
Nn2g12194 Nelumbo nucifera HOM05D004469 ORTHO05D005429 4.2e-98 362.5 399 49.1
MELO3C004484.2 Cucumis melo HOM05D004469 ORTHO05D005429 5.4e-98 362.1 387 53.0
Psat1g021280 Pisum sativum HOM05D004469 ORTHO05D005429 5.4e-98 362.1 398 49.5
FAN26G0918 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.2e-97 360.9 387 54.8
FAN21G2818 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.7e-97 359.8 395 53.2
SalBow1G3789 Salvia bowleyana HOM05D004469 ORTHO05D005429 2.7e-97 359.8 399 47.9
VMungo1309G2337 Vigna mungo HOM05D004469 ORTHO05D005429 2.7e-97 359.8 390 50.5
FAN19G1855 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.3e-96 357.5 403 53.1
FAN23G0971 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.3e-96 357.5 403 53.8
CsaV3_2G003380 Cucumis sativus L. HOM05D004469 ORTHO05D005429 1.7e-96 357.1 388 51.3
CAN.G1281.7 Capsicum annuum HOM05D004469 ORTHO05D005429 2.3e-96 356.7 385 50.4
Sed0012323 Sechium edule HOM05D004469 ORTHO05D005429 2.3e-96 356.7 385 51.4
Cc06_g07630 Coffea canephora HOM05D004469 ORTHO05D005429 6.6e-96 355.1 383 49.3
Migut.J01235 Erythranthe guttata HOM05D004469 ORTHO05D005429 1.5e-95 354.0 397 49.1
Nitab4.5_0002286g0020 Nicotiana tabacum HOM05D004469 ORTHO05D005429 1.5e-95 354.0 382 49.7
Sopen07g003440 Solanum pennellii HOM05D004469 ORTHO05D005429 2.5e-95 353.2 383 50.9
Actinidia26357 Actinidia chinensis HOM05D004469 ORTHO05D005429 3.3e-95 352.8 390 47.9
AUR62011228 Chenopodium quinoa HOM05D004469 ORTHO05D005429 3.3e-95 352.8 397 48.6
Solyc07g007370.3 Solanum lycopersicum HOM05D004469 ORTHO05D005429 3.3e-95 352.8 383 50.9
CSS0041761 Camellia sinensis var. sinensis HOM05D004469 ORTHO05D005429 4.3e-95 352.4 401 48.1
Sc08g0006010 Simmondsia chinensis HOM05D004469 ORTHO05D005429 4.3e-95 352.4 383 49.3
MBI14_g24228_MAGBIO Magnolia biondii HOM05D004469 ORTHO05D005429 7.3e-95 351.7 384 50.3
Aqoxy7G03591 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 1.6e-94 350.5 381 50.7
PGSC0003DMG400030724 Solanum tuberosum HOM05D004469 ORTHO05D005429 1.6e-94 350.5 383 50.1
Nitab4.5_0002845g0050 Nicotiana tabacum HOM05D004469 ORTHO05D005429 4.7e-94 349.0 379 49.1
FAN11G3069 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.8e-93 347.1 393 52.2
FvH4_3g33700 Fragaria vesca HOM05D004469 ORTHO05D005429 2.4e-93 346.7 393 51.9
ClCG11G003510 Citrullus lanatus HOM05D004469 ORTHO05D005429 4.0e-93 345.9 388 50.5
MSTRG.19616 Avicennia marina HOM05D004469 ORTHO05D005429 9.0e-93 344.7 388 48.5
ECA234G1865 Erigeron canadensis HOM05D004469 ORTHO05D005429 9.0e-93 344.7 379 49.3
AUR62020006 Chenopodium quinoa HOM05D004469 ORTHO05D005429 1.5e-92 344.0 399 48.1
Peaxi162Scf00088g00521 Petunia axillaris HOM05D004469 ORTHO05D005429 1.5e-92 344.0 386 49.0
arahy.Tifrunner.gnm1.ann1.T08WW4 Arachis hypogaea HOM05D004469 ORTHO05D005429 9.9e-92 341.3 384 49.0
Lsat_1_v5_gn_5_92700 Lactuca sativa HOM05D004469 ORTHO05D005429 1.3e-91 340.9 393 48.3
PSO210G6517 Papaver somniferum HOM05D004469 ORTHO05D005429 2.2e-91 340.1 392 49.2
ATR0767G179 Amborella trichopoda HOM05D004469 ORTHO05D005429 8.4e-91 338.2 388 48.2
Rhsim03G0253400 Rhododendron simsii HOM05D004469 ORTHO05D005429 1.9e-90 337.0 390 47.7
DCAR_014918 Daucus carota HOM05D004469 ORTHO05D005429 9.3e-90 334.7 391 47.6
Lj9C704T18 Lonicera japonica HOM05D004469 ORTHO05D005429 1.6e-89 334.0 403 47.4
Eucgr.L03187 Eucalyptus grandis HOM05D004469 ORTHO05D005429 3.5e-89 332.8 271 60.5
HanXRQChr10g0314151 Helianthus annuus HOM05D004469 ORTHO05D005429 3.5e-89 332.8 379 47.0
arahy.Tifrunner.gnm1.ann1.FNUG0A Arachis hypogaea HOM05D004469 ORTHO05D005429 7.8e-89 331.6 405 47.4
Actinidia14229 Actinidia chinensis HOM05D004469 ORTHO05D005429 1.5e-87 327.4 346 49.4
Hund09311 Selenicereus undatus HOM05D004469 ORTHO05D005429 8.1e-86 321.6 386 48.4
TPR.G23109 Trifolium pratense HOM05D004469 ORTHO05D005429 1.4e-85 320.9 382 46.3
Sabra18G0101500 Salix brachista HOM05D004469 ORTHO05D005429 2.0e-84 317.0 402 47.5
vmacro06114 Vaccinium macrocarpon HOM05D004469 ORTHO05D005429 2.0e-84 317.0 382 46.3
Sabra18G0099700 Salix brachista HOM05D004469 ORTHO05D005429 3.4e-84 316.2 402 47.3
Oeu028017.1 Olea europaea HOM05D004469 ORTHO05D005429 4.9e-83 312.4 380 47.1
Aqoxy3G02754 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 9.3e-82 308.1 304 55.6
Zm00001eb068670 Zea mays HOM05D004469 ORTHO05D005429 4.8e-78 295.8 395 45.1
FAN25G0032 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.0e-77 292.7 395 47.6
unitig_27.g25106 Utricularia gibba HOM05D004469 ORTHO05D005429 2.2e-75 287.0 393 42.5
FAN16G0997 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.1e-74 284.6 273 54.9
HPP92_003256 Vanilla planifolia HOM05D004469 ORTHO05D005429 7.1e-74 282.0 378 43.1
Duzib168G2148 Durio zibethinus HOM05D004469 ORTHO05D005429 2.7e-73 280.0 210 66.2
SEGI_05144 Sequoiadendron giganteum HOM05D004469 ORTHO05D005429 6.7e-72 275.4 338 45.3
CDE05G2521 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 1.3e-70 271.2 345 46.7
Mapoly0101s0042 Marchantia polymorpha HOM05D004469 ORTHO05D005429 3.1e-69 266.5 384 42.2
Pp3c3_18690 Physcomitrium patens HOM05D004469 ORTHO05D005429 3.4e-68 263.1 397 42.3
AagrBONN_evm.TU.Sc2ySwM_344.1954 Anthoceros agrestis HOM05D004469 ORTHO05D005429 8.7e-64 248.4 386 41.2
Glyma.17G107100 Glycine max HOM05D004469 ORTHO05D005429 2.6e-60 236.9 395 42.5
SMO367G0076 Selaginella moellendorffii HOM05D004469 ORTHO05D005429 3.4e-60 236.5 396 37.1
FAN28G2979 Fragaria x ananassa HOM05D004469 ORTHO05D005429 8.5e-59 231.9 221 54.8
Duzib168G2240 Durio zibethinus HOM05D004469 ORTHO05D005429 5.5e-58 229.2 276 48.9
arahy.Tifrunner.gnm1.ann1.WC6UXQ Arachis hypogaea HOM05D004469 ORTHO05D005429 4.5e-52 209.5 291 41.9
Nitab4.5_0010073g0010 Nicotiana tabacum HOM05D004469 ORTHO05D005429 2.9e-51 206.8 157 61.8
arahy.Tifrunner.gnm1.ann1.CP8KSN Arachis hypogaea HOM05D004469 ORTHO05D005429 5.1e-48 196.1 310 39.7
RcHm_v2.0_Chr5g0016251 Rosa chinensis HOM05D004469 ORTHO05D005429 7.4e-47 192.2 380 39.2
Cre03.g205650 Chlamydomonas reinhardtii HOM05D004469 ORTHO05D005429 4.8e-46 189.5 242 42.6
CiPaw.04G177800 Carya illinoinensis HOM05D004469 ORTHO05D005429 8.0e-41 172.2 123 67.5
Eucgr.C04399 Eucalyptus grandis HOM05D004469 ORTHO05D005429 4.4e-39 166.4 148 56.8
RcHm_v2.0_Chr5g0061311 Rosa chinensis HOM05D004469 ORTHO05D005429 4.4e-39 166.4 140 60.0
CBR_g57083 Chara braunii HOM05D000019 ORTHO05D000048 5.3e-37 159.5 318 37.4
RcHm_v2.0_Chr5g0016141 Rosa chinensis HOM05D004469 ORTHO05D005429 4.2e-34 149.8 121 62.0
RcHm_v2.0_Chr5g0079831 Rosa chinensis HOM05D004469 ORTHO05D005429 9.4e-34 148.7 337 38.9
RcHm_v2.0_Chr1g0314541 Rosa chinensis HOM05D004469 ORTHO05D005429 4.7e-33 146.4 121 60.3
RcHm_v2.0_Chr1g0341141 Rosa chinensis HOM05D004469 ORTHO05D005429 1.8e-29 134.4 106 62.3
RcHm_v2.0_Chr5g0072051 Rosa chinensis HOM05D004469 ORTHO05D005429 1.3e-14 85.1 284 28.2
HanXRQChr04g0107841 Helianthus annuus HOM05D004469 ORTHO05D005429 6.3e-14 82.8 84 51.2
Eucgr.E04270 Eucalyptus grandis HOM05D000097 ORTHO05D000041 5.4e-13 79.7 56 57.1
RcHm_v2.0_Chr5g0072041 Rosa chinensis HOM05D004469 ORTHO05D005429 3.5e-12 77.0 55 69.1
Oeu028136.1 Olea europaea HOM05D004469 ORTHO05D005429 3.9e-11 73.6 140 39.3
Eucgr.E04269 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.3e-06 58.5 46 54.3
RcHm_v2.0_Chr7g0241361 Rosa chinensis HOM05D004469 ORTHO05D005429 1.3e-06 58.5 37 62.2
Thecc.08G193600 Theobroma cacao HOM05D004469 ORTHO05D005429 2.2e-06 57.8 47 55.3
vmacro11088 Vaccinium macrocarpon HOM05D004469 ORTHO05D426737 2.9e-06 57.4 43 53.5


User provided reference genes

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