Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 3.4e-183 644.8 314 100.0
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 3.4e-167 591.7 342 86.0
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 7.1e-165 583.9 342 85.1
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 9.3e-165 583.6 329 88.8
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 1.4e-160 569.7 335 83.9
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 1.4e-160 569.7 337 83.4
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 1.4e-160 569.7 337 83.4
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 4.0e-160 568.2 343 83.4
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 1.2e-159 566.6 343 83.1
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 2.0e-159 565.8 342 82.7
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 1.4e-157 559.7 335 83.9
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 2.5e-157 558.9 335 83.9
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 3.5e-156 555.1 335 83.0
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 1.0e-155 553.5 309 89.6
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 3.9e-155 551.6 336 81.2
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 2.5e-154 548.9 344 80.2
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 7.4e-154 547.4 344 80.2
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 2.1e-153 545.8 344 79.9
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 6.2e-153 544.3 344 79.4
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 4.1e-152 541.6 342 79.8
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 4.6e-148 528.1 314 82.8
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 3.0e-139 498.8 350 73.7
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 3.9e-139 498.4 351 72.1
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 3.7e-137 491.9 308 81.2
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 1.5e-127 459.9 350 67.7
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 2.0e-127 459.5 349 66.8
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 4.5e-127 458.4 340 69.4
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 2.9e-126 455.7 336 70.5
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 5.0e-126 454.9 332 68.4
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 8.5e-126 454.1 334 69.8
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.9e-125 453.0 336 67.6
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.5e-125 452.6 336 67.6
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 4.2e-125 451.8 331 70.1
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 3.6e-124 448.7 339 67.0
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 4.7e-124 448.4 349 67.0
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 4.7e-124 448.4 323 70.6
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 6.1e-124 448.0 337 68.0
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 8.0e-124 447.6 340 67.4
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 1.0e-123 447.2 340 67.6
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 1.0e-123 447.2 334 67.7
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.4e-123 446.8 336 67.6
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 4.0e-123 445.3 340 67.6
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 1.5e-122 443.4 337 68.0
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 7.5e-122 441.0 336 67.0
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 9.7e-122 440.7 336 67.0
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 9.7e-122 440.7 338 67.2
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 9.7e-122 440.7 336 67.3
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 1.3e-121 440.3 349 66.8
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 3.7e-121 438.7 339 67.3
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 3.7e-121 438.7 342 65.8
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 4.8e-121 438.3 337 66.2
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 8.2e-121 437.6 348 64.9
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.1e-120 437.2 349 66.2
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.1e-120 437.2 349 66.2
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.4e-120 436.8 348 63.8
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 3.1e-120 435.6 356 64.9
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 3.1e-120 435.6 333 65.8
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 4.1e-120 435.3 345 64.9
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 5.3e-120 434.9 354 64.1
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 5.3e-120 434.9 336 66.1
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 1.2e-119 433.7 356 64.9
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.2e-119 433.7 336 65.8
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 1.2e-119 433.7 352 66.2
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 2.0e-119 433.0 347 65.1
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 2.0e-119 433.0 333 67.9
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 4.5e-119 431.8 344 64.5
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 5.9e-119 431.4 330 67.6
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 7.7e-119 431.0 351 66.7
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 7.7e-119 431.0 358 65.1
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.0e-118 430.6 337 66.2
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 1.3e-118 430.3 358 63.7
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 1.7e-118 429.9 335 66.3
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 1.7e-118 429.9 360 64.2
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 2.2e-118 429.5 354 63.0
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.2e-118 429.5 348 62.9
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 8.5e-118 427.6 350 63.4
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 1.1e-117 427.2 322 66.8
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 1.9e-117 426.4 350 63.7
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 3.2e-117 425.6 353 64.6
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 7.2e-117 424.5 321 67.6
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 9.4e-117 424.1 363 63.4
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 1.6e-116 423.3 355 62.5
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 2.1e-116 422.9 354 63.6
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 3.6e-116 422.2 348 63.5
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 4.7e-116 421.8 350 64.3
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 8.0e-116 421.0 341 64.5
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 2.3e-115 419.5 336 64.9
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.0e-115 419.1 345 62.0
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 3.0e-115 419.1 352 62.2
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 4.0e-115 418.7 374 59.6
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 5.2e-115 418.3 372 60.2
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 1.2e-114 417.2 321 66.7
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 2.6e-114 416.0 339 64.0
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 2.6e-114 416.0 372 60.5
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 3.4e-114 415.6 361 62.3
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 1.7e-113 413.3 318 67.0
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 8.3e-113 411.0 344 61.9
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 3.1e-112 409.1 344 62.5
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 1.2e-111 407.1 350 61.7
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 2.0e-111 406.4 376 59.0
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 1.5e-109 400.2 346 60.4
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 4.2e-109 398.7 346 60.1
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 7.2e-109 397.9 342 62.3
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 7.2e-109 397.9 346 60.1
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 9.4e-109 397.5 359 61.0
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 2.1e-108 396.4 336 63.4
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 8.0e-108 394.4 364 59.9
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 3.1e-104 382.5 338 59.5
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 9.1e-104 380.9 333 62.5
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 1.6e-103 380.2 323 61.3
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 3.5e-103 379.0 374 54.5
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 3.5e-103 379.0 339 59.3
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 2.5e-101 372.9 354 55.6
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 7.2e-101 371.3 373 55.5
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 6.1e-100 368.2 343 58.6
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 1.4e-99 367.1 325 57.8
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 1.8e-99 366.7 311 63.0
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 8.9e-99 364.4 359 57.7
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 1.2e-98 364.0 365 53.7
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 4.9e-97 358.6 408 50.7
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 1.4e-96 357.1 329 60.2
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 2.0e-95 353.2 353 55.2
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 3.5e-95 352.4 304 60.5
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 1.7e-94 350.1 514 43.0
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 3.9e-94 349.0 322 59.6
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 1.9e-93 346.7 354 55.4
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 8.0e-92 341.3 354 53.1
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 9.2e-88 327.8 150 100.0
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.6e-87 327.0 322 56.5
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 2.5e-85 319.7 419 47.0
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 8.9e-83 311.2 362 49.2
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 2.0e-82 310.1 401 47.1
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 5.1e-78 295.4 361 49.0
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 2.0e-74 283.5 308 52.6
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 1.1e-72 277.7 340 47.4
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 9.2e-72 274.6 366 45.9
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 3.0e-70 269.6 391 43.2
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 1.3e-65 254.2 226 60.2
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 1.3e-65 254.2 226 60.2
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 4.2e-64 249.2 145 75.9
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 1.6e-60 237.3 284 50.4
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 4.4e-58 229.2 332 43.4
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 2.2e-57 226.9 376 39.9
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 6.4e-57 225.3 225 57.3
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 7.1e-56 221.9 144 65.3
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 4.6e-55 219.2 355 40.8
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 3.0e-54 216.5 202 61.9
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 1.4e-48 197.6 188 59.6
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 2.4e-48 196.8 396 35.1
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 1.0e-46 191.4 179 58.1
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 3.3e-45 186.4 155 64.5
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 2.1e-44 183.7 135 71.9
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 1.6e-36 157.5 133 54.9
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 6.3e-36 155.6 71 94.4
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.4e-35 154.5 361 31.6
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.4e-32 144.4 337 32.3
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 9.7e-29 131.7 121 57.0
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 1.5e-26 124.4 104 59.6
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 9.4e-16 88.6 84 59.5
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 4.4e-13 79.7 63 65.1
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 2.5e-08 63.9 33 78.8


User provided reference genes

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