Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03084 Brassica carinata HOM05D006988 ORTHO05D008731 8.3e-54 213.4 103 100.0
C09p00070 Brassica napus HOM05D006988 ORTHO05D008731 2.3e-43 178.7 170 58.8
BraA09t35681Z Brassica rapa HOM05D006988 ORTHO05D008731 2.3e-43 178.7 170 58.8
BcaC04g24207 Brassica carinata HOM05D006988 ORTHO05D008731 1.1e-42 176.4 170 58.2
BolC9t52942H Brassica oleracea HOM05D006988 ORTHO05D008731 1.1e-42 176.4 170 58.2
BcaB01g02207 Brassica carinata HOM05D006988 ORTHO05D008731 1.1e-40 169.9 170 56.5
Carub.0006s3719 Capsella rubella HOM05D006988 ORTHO05D008731 2.9e-38 161.8 170 51.8
CARHR248070 Cardamine hirsuta HOM05D006988 ORTHO05D008731 2.9e-38 161.8 170 52.9
Sp6g00080 Schrenkiella parvula HOM05D006988 ORTHO05D008731 3.7e-38 161.4 170 53.5
AT4G00030 Arabidopsis thaliana HOM05D006988 ORTHO05D008731 8.6e-35 150.2 169 47.9
AL6G53480 Arabidopsis lyrata HOM05D006988 ORTHO05D008731 1.9e-34 149.1 170 47.6
Aa31LG5G100 Aethionema arabicum HOM05D006988 ORTHO05D008731 2.8e-33 145.2 187 44.4
THA.LOC104814078 Tarenaya hassleriana HOM05D006988 ORTHO05D008731 1.1e-32 143.3 170 45.9
COL.COLO4_12466 Corchorus olitorius HOM05D006988 ORTHO05D008731 1.8e-32 142.5 170 47.1
Duzib133G0505 Durio zibethinus HOM05D006988 ORTHO05D008731 2.3e-32 142.1 170 46.5
CiPaw.13G030900 Carya illinoinensis HOM05D006988 ORTHO05D008731 3.1e-32 141.7 170 45.3
Gohir.A07G147500 Gossypium hirsutum HOM05D006988 ORTHO05D008731 1.5e-31 139.4 170 44.7
Gohir.D07G153600 Gossypium hirsutum HOM05D006988 ORTHO05D008731 1.5e-31 139.4 170 44.7
VMungo1383G3408 Vigna mungo HOM05D006988 ORTHO05D008731 1.5e-31 139.4 168 46.4
Gorai.001G175700 Gossypium raimondii HOM05D006988 ORTHO05D008731 3.4e-31 138.3 170 44.1
Thecc.01G386200 Theobroma cacao HOM05D006988 ORTHO05D008731 3.4e-31 138.3 170 44.7
Haze_02728 Corylus avellana HOM05D006988 ORTHO05D008731 4.4e-31 137.9 170 44.7
Phvul.008G157000 Phaseolus vulgaris HOM05D006988 ORTHO05D008731 1.7e-30 136.0 168 45.8
arahy.Tifrunner.gnm1.ann1.EWF75K Arachis hypogaea HOM05D006988 ORTHO05D008731 2.2e-30 135.6 168 45.8
arahy.Tifrunner.gnm1.ann1.I2GGUW Arachis hypogaea HOM05D006988 ORTHO05D008731 2.2e-30 135.6 168 45.8
Ca_27093_v3 Cicer arietinum L. HOM05D006988 ORTHO05D008731 2.2e-30 135.6 170 44.7
COL.COLO4_37993 Corchorus olitorius HOM05D006988 ORTHO05D008731 6.4e-30 134.0 173 44.5
CSS0001978 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 8.3e-30 133.7 170 43.5
Lj9A563T51 Lonicera japonica HOM05D006988 ORTHO05D008731 8.3e-30 133.7 170 44.1
Rhsim07G0032500 Rhododendron simsii HOM05D006988 ORTHO05D008731 8.3e-30 133.7 169 43.8
CANSAT01G0747 Cannabis sativa HOM05D006988 ORTHO05D008731 1.4e-29 132.9 172 43.0
CSS0011747 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 1.9e-29 132.5 170 42.9
Dinv43657 Davidia involucrata HOM05D006988 ORTHO05D008731 1.9e-29 132.5 170 44.1
Medtr7g444820 Medicago truncatula HOM05D006988 ORTHO05D008731 1.9e-29 132.5 170 44.7
QL04p035766 Quercus lobata HOM05D006988 ORTHO05D008731 1.9e-29 132.5 169 43.8
Glyma.01G076100 Glycine max HOM05D006988 ORTHO05D008731 3.2e-29 131.7 167 43.7
Atru.chr5.214 Acer truncatum HOM05D006988 ORTHO05D008731 4.1e-29 131.3 171 43.9
Manes.01G270400 Manihot esculenta HOM05D006988 ORTHO05D008731 5.4e-29 131.0 170 44.7
Prupe.2G135300 Prunus persica HOM05D006988 ORTHO05D008731 5.4e-29 131.0 170 42.9
Lj1g0025695 Lotus japonicus HOM05D006988 ORTHO05D008731 7.1e-29 130.6 170 42.4
Sabra14G0042600 Salix brachista HOM05D006988 ORTHO05D008731 7.1e-29 130.6 170 43.5
Potri.014G058400 Populus trichocarpa HOM05D006988 ORTHO05D008731 9.2e-29 130.2 170 42.9
Glyma.11G164037 Glycine max HOM05D006988 ORTHO05D008731 2.7e-28 128.6 168 44.0
Nn6g33931 Nelumbo nucifera HOM05D006988 ORTHO05D008731 2.7e-28 128.6 170 41.8
TAR636G1375 Trochodendron aralioides HOM05D006988 ORTHO05D008731 3.5e-28 128.3 170 39.4
EL10Ac1g00818 Beta vulgaris HOM05D006988 ORTHO05D008731 1.0e-27 126.7 170 41.2
AUR62004148 Chenopodium quinoa HOM05D006988 ORTHO05D008731 1.3e-27 126.3 170 40.6
AUR62013709 Chenopodium quinoa HOM05D006988 ORTHO05D008731 1.3e-27 126.3 170 40.6
ATR0317G076 Amborella trichopoda HOM05D006988 ORTHO05D008731 1.7e-27 125.9 170 40.6
ClCG06G003000 Citrullus lanatus HOM05D006988 ORTHO05D008731 1.7e-27 125.9 170 42.4
Sopen10g008330 Solanum pennellii HOM05D006988 ORTHO05D008731 1.7e-27 125.9 170 41.8
PGSC0003DMG400011763 Solanum tuberosum HOM05D006988 ORTHO05D008731 1.7e-27 125.9 170 41.8
Sed0016586 Sechium edule HOM05D006988 ORTHO05D008731 2.3e-27 125.6 168 42.3
MELO3C021141.2 Cucumis melo HOM05D006988 ORTHO05D008731 3.0e-27 125.2 170 41.2
Hma1.2p1_0341F.1_g130300 Hydrangea macrophylla HOM05D006988 ORTHO05D008731 3.0e-27 125.2 167 41.9
FAN03G1007 Fragaria x ananassa HOM05D006988 ORTHO05D008731 3.9e-27 124.8 168 41.1
MD07G1111900 Malus domestica HOM05D006988 ORTHO05D008731 3.9e-27 124.8 170 42.4
Solyc10g018590.2 Solanum lycopersicum HOM05D006988 ORTHO05D008731 3.9e-27 124.8 170 41.2
CsaV3_6G009120 Cucumis sativus L. HOM05D006988 ORTHO05D008731 5.1e-27 124.4 170 41.2
Cc02_g24580 Coffea canephora HOM05D006988 ORTHO05D008731 6.6e-27 124.0 170 40.0
MBI04_g09512_MAGBIO Magnolia biondii HOM05D006988 ORTHO05D008731 6.6e-27 124.0 171 40.4
Aqoxy7G00790 Aquilegia oxysepala HOM05D006988 ORTHO05D008731 1.9e-26 122.5 171 40.4
Hund17063 Selenicereus undatus HOM05D006988 ORTHO05D008731 2.5e-26 122.1 170 38.8
Peaxi162Scf00350g00014 Petunia axillaris HOM05D006988 ORTHO05D008731 4.3e-26 121.3 170 40.6
Lsat_1_v5_gn_7_10320 Lactuca sativa HOM05D006988 ORTHO05D008731 5.6e-26 120.9 170 40.0
FvH4_7g10720 Fragaria vesca HOM05D006988 ORTHO05D008731 9.5e-26 120.2 168 40.5
FAN06G2548 Fragaria x ananassa HOM05D006988 ORTHO05D008731 9.5e-26 120.2 168 40.5
FAN06G3033 Fragaria x ananassa HOM05D006988 ORTHO05D008731 9.5e-26 120.2 168 40.5
BcaC03g13893 Brassica carinata HOM05D006988 ORTHO05D008731 2.8e-25 118.6 148 50.0
Migut.B01575 Erythranthe guttata HOM05D006988 ORTHO05D008731 4.7e-25 117.9 168 38.1
CAN.G160.69 Capsicum annuum HOM05D006988 ORTHO05D008731 1.1e-24 116.7 171 40.4
PSO170G6265 Papaver somniferum HOM05D006988 ORTHO05D008731 1.1e-24 116.7 172 39.0
DCAR_031865 Daucus carota HOM05D006988 ORTHO05D008731 1.8e-24 115.9 170 39.4
SalBow5G4855 Salvia bowleyana HOM05D006988 ORTHO05D008731 2.4e-24 115.5 170 38.2
SEGI_39512 Sequoiadendron giganteum HOM05D006988 ORTHO05D008731 2.4e-24 115.5 169 37.3
C03p91270 Brassica napus HOM05D006988 ORTHO05D008731 8.9e-24 113.6 52 94.2
ECA236G3211 Erigeron canadensis HOM05D006988 ORTHO05D008731 1.2e-23 113.2 171 37.4
SGA_v2.0_scaffold153G36954 Striga asiatica HOM05D006988 ORTHO05D008731 1.3e-22 109.8 195 33.3
Nitab4.5_0000882g0050 Nicotiana tabacum HOM05D006988 ORTHO05D008731 3.8e-22 108.2 178 38.8
TPR.G39083 Trifolium pratense HOM05D006988 ORTHO05D008731 4.9e-22 107.8 144 41.7
Os04g0551700 Oryza sativa ssp. japonica HOM05D006988 ORTHO05D008731 1.4e-21 106.3 167 37.1
Pp3c14_7270 Physcomitrium patens HOM05D006988 ORTHO05D008731 7.1e-21 104.0 168 34.5
Lalb_Chr19g0127481 Lupinus albus HOM05D006988 ORTHO05D008731 1.2e-20 103.2 52 82.7
Ciclev10022767m.g Citrus clementina HOM05D006988 ORTHO05D008731 4.6e-20 101.3 141 40.4
GSVIVG01018209001 Vitis vinifera HOM05D006988 ORTHO05D008731 4.6e-20 101.3 141 41.1
SMO367G0814 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 1.3e-19 99.8 169 33.7
TWI59G0585 Tripterygium wilfordii HOM05D006988 ORTHO05D008731 1.3e-19 99.8 148 41.2
HanXRQChr06g0168881 Helianthus annuus HOM05D006988 ORTHO05D008731 1.7e-19 99.4 160 37.5
BolC3t17906H Brassica oleracea HOM05D001199 ORTHO05D001013 3.0e-19 98.6 51 100.0
Nitab4.5_0001501g0030 Nicotiana tabacum HOM05D006988 ORTHO05D008731 5.1e-19 97.8 157 38.2
SMO367G0459 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 6.6e-19 97.4 169 33.1
A09p00790 Brassica napus HOM05D006988 ORTHO05D008731 7.3e-18 94.0 51 94.1
Mapoly0004s0296 Marchantia polymorpha HOM05D006988 ORTHO05D008731 7.3e-18 94.0 163 35.0
Zm00001eb257570 Zea mays HOM05D006988 ORTHO05D008731 7.3e-18 94.0 49 73.5
C03p56160 Brassica napus HOM05D001199 ORTHO05D001013 1.4e-16 89.7 53 92.5
Thhalv10028565m.g Eutrema salsugineum HOM05D000447 ORTHO05D000315 3.4e-15 85.1 51 84.3
Sc23g0003890 Simmondsia chinensis HOM05D006988 ORTHO05D008731 1.3e-14 83.2 164 32.3
Cpa.g.sc620.2 Carica papaya HOM05D006988 ORTHO05D008731 4.2e-13 78.2 136 36.8
Actinidia12175 Actinidia chinensis HOM05D006988 ORTHO05D008731 7.1e-13 77.4 73 53.4
C02p10970 Brassica napus HOM05D006988 ORTHO05D008731 1.2e-12 76.6 32 100.0
BolC2t07167H Brassica oleracea HOM05D006988 ORTHO05D008731 1.2e-12 76.6 32 100.0
Eucgr.D02502 Eucalyptus grandis HOM05D006988 ORTHO05D008731 1.3e-11 73.2 144 35.4
RcHm_v2.0_Chr1g0348671 Rosa chinensis HOM05D006988 ORTHO05D008731 1.7e-11 72.8 136 33.8
Actinidia22773 Actinidia chinensis HOM05D006988 ORTHO05D008731 1.6e-09 66.2 63 50.8
MCO12G266 Micromonas commoda HOM05D006988 ORTHO05D008731 2.8e-09 65.5 45 60.0
Ah.16g110010 Amaranthus hybridus HOM05D006988 ORTHO05D008731 3.6e-09 65.1 137 30.7
Psat3g157120 Pisum sativum HOM05D006988 ORTHO05D008731 3.6e-09 65.1 51 58.8
MSTRG.20719 Avicennia marina HOM05D006988 ORTHO05D008731 4.8e-09 64.7 141 31.9
vmacro13459 Vaccinium macrocarpon HOM05D006988 ORTHO05D008731 1.4e-08 63.2 51 60.8
Dinv13821 Davidia involucrata HOM05D006988 ORTHO05D008731 5.3e-08 61.2 49 63.3
FAN01G2452 Fragaria x ananassa HOM05D006988 ORTHO05D008731 6.9e-08 60.8 134 30.6
PRCOL_00005443 Prasinoderma coloniale HOM05D006988 ORTHO05D008731 6.9e-08 60.8 36 72.2
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 9.9e-07 57.0 51 58.8
RcHm_v2.0_Chr1g0348661 Rosa chinensis HOM05D006988 ORTHO05D008731 1.3e-06 56.6 33 72.7
unitig_26.g9723 Utricularia gibba HOM05D000502 ORTHO05D000356 1.3e-06 56.6 51 51.0
Cre14.g618050 Chlamydomonas reinhardtii HOM05D006988 ORTHO05D008731 4.9e-06 54.7 37 54.1
AagrBONN_evm.TU.Sc2ySwM_362.1347 Anthoceros agrestis HOM05D006988 ORTHO05D008731 6.4e-06 54.3 51 49.0


User provided reference genes

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