Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03076 Brassica carinata HOM05D003477 ORTHO05D004043 4.3e-44 181.0 97 100.0
A03p45360 Brassica napus HOM05D003477 ORTHO05D004043 4.8e-35 151.0 80 95.0
BraA03t13668Z Brassica rapa HOM05D003477 ORTHO05D004043 4.8e-35 151.0 80 95.0
BcaC01g03075 Brassica carinata HOM05D003477 ORTHO05D004043 9.0e-34 146.7 80 92.5
C03p56260 Brassica napus HOM05D003477 ORTHO05D004043 9.0e-34 146.7 80 92.5
BolC3t17914H Brassica oleracea HOM05D003477 ORTHO05D004043 9.0e-34 146.7 80 92.5
CARHR105430 Cardamine hirsuta HOM05D003477 ORTHO05D004043 8.4e-32 140.2 80 88.8
Thhalv10022939m.g Eutrema salsugineum HOM05D003477 ORTHO05D004043 9.6e-28 126.7 72 91.7
Sp3g28420 Schrenkiella parvula HOM05D003477 ORTHO05D004043 1.5e-25 119.4 61 95.1
AL3G46800 Arabidopsis lyrata HOM05D003477 ORTHO05D004043 2.2e-24 115.5 61 91.8
Carub.0003s2895 Capsella rubella HOM05D003477 ORTHO05D004043 2.2e-24 115.5 71 85.9
AT2G15000 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 6.4e-24 114.0 60 91.7
BcaC06g36034 Brassica carinata HOM05D003477 ORTHO05D004043 1.6e-22 109.4 61 88.5
Aa31LG8G13000 Aethionema arabicum HOM05D003477 ORTHO05D004043 2.1e-22 109.0 61 85.2
Aa31LG2G16840 Aethionema arabicum HOM05D003477 ORTHO05D004043 1.3e-21 106.3 72 73.6
BcaB08g34577 Brassica carinata HOM05D003477 ORTHO05D004043 1.9e-20 102.4 53 94.3
QL11p032673 Quercus lobata HOM05D003477 ORTHO05D004043 8.2e-19 97.1 78 65.4
Sed0009886 Sechium edule HOM05D003477 ORTHO05D004043 8.2e-19 97.1 76 64.5
vmacro19455 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 1.8e-18 95.9 80 67.5
Carub.0007s0610 Capsella rubella HOM05D003477 ORTHO05D004043 3.1e-18 95.1 70 71.4
Duzib248G0529 Durio zibethinus HOM05D003477 ORTHO05D004043 4.0e-18 94.7 83 66.3
Gorai.005G234400 Gossypium raimondii HOM05D003477 ORTHO05D004043 4.0e-18 94.7 82 65.9
CiPaw.05G013300 Carya illinoinensis HOM05D003477 ORTHO05D004043 5.3e-18 94.4 77 64.9
ClCG02G006540 Citrullus lanatus HOM05D003477 ORTHO05D004043 5.3e-18 94.4 78 62.8
Duzib052G0507 Durio zibethinus HOM05D003477 ORTHO05D004043 5.3e-18 94.4 83 65.1
SGA_v2.0_scaffold32G13034 Striga asiatica HOM05D003477 ORTHO05D004043 2.0e-17 92.4 81 60.5
A07p05410 Brassica napus HOM05D003477 ORTHO05D004043 2.6e-17 92.0 54 85.2
PGSC0003DMG400025859 Solanum tuberosum HOM05D003477 ORTHO05D004043 2.6e-17 92.0 82 61.0
C07p08710 Brassica napus HOM05D003477 ORTHO05D004043 3.4e-17 91.7 50 90.0
BolC7t41282H Brassica oleracea HOM05D003477 ORTHO05D004043 3.4e-17 91.7 50 90.0
BraA07t28337Z Brassica rapa HOM05D003477 ORTHO05D004043 3.4e-17 91.7 50 90.0
MELO3C018498.2 Cucumis melo HOM05D003477 ORTHO05D004043 3.4e-17 91.7 79 62.0
CAN.G606.19 Capsicum annuum HOM05D003477 ORTHO05D004043 5.8e-17 90.9 82 59.8
Dinv15774 Davidia involucrata HOM05D003477 ORTHO05D004043 1.7e-16 89.4 81 63.0
TAR376G0403 Trochodendron aralioides HOM05D003477 ORTHO05D004043 2.9e-16 88.6 73 64.4
SGA_v2.0_scaffold225G42992 Striga asiatica HOM05D003477 ORTHO05D004043 3.8e-16 88.2 85 62.4
DCAR_029094 Daucus carota HOM05D003477 ORTHO05D004043 6.5e-16 87.4 77 61.0
VMungo0720G2427 Vigna mungo HOM05D003477 ORTHO05D004043 8.4e-16 87.0 81 60.5
CANSAT25G3186 Cannabis sativa HOM05D003477 ORTHO05D004043 1.1e-15 86.7 74 64.9
Gorai.008G021900 Gossypium raimondii HOM05D003477 ORTHO05D004043 1.1e-15 86.7 83 59.0
ClCG05G010360 Citrullus lanatus HOM05D003477 ORTHO05D004043 1.4e-15 86.3 78 60.3
BolC1t00438H Brassica oleracea HOM05D003477 ORTHO05D004043 2.5e-15 85.5 86 55.8
Lj5g0009419 Lotus japonicus HOM05D003477 ORTHO05D004043 2.5e-15 85.5 78 57.7
DCAR_001659 Daucus carota HOM05D003477 ORTHO05D004043 3.2e-15 85.1 77 58.4
Migut.B00399 Erythranthe guttata HOM05D003477 ORTHO05D004043 3.2e-15 85.1 81 59.3
Actinidia00402 Actinidia chinensis HOM05D003477 ORTHO05D004043 4.2e-15 84.7 76 63.2
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 4.2e-15 84.7 76 61.8
A01p04150 Brassica napus HOM05D003477 ORTHO05D004043 5.5e-15 84.3 56 71.4
BraA01t00404Z Brassica rapa HOM05D003477 ORTHO05D004043 5.5e-15 84.3 56 71.4
arahy.Tifrunner.gnm1.ann1.K085P0 Arachis hypogaea HOM05D003477 ORTHO05D004043 7.1e-15 84.0 75 60.0
C01p04520 Brassica napus HOM05D003477 ORTHO05D004043 9.3e-15 83.6 86 55.8
BcaNung04163 Brassica carinata HOM05D003477 ORTHO05D004043 1.2e-14 83.2 57 70.2
Prupe.8G137400 Prunus persica HOM05D003477 ORTHO05D004043 1.2e-14 83.2 73 64.4
TWI31G0442 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 2.1e-14 82.4 83 57.8
AT4G34265 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 2.7e-14 82.0 71 60.6
FAN27G0803 Fragaria x ananassa HOM05D003477 ORTHO05D004043 3.5e-14 81.6 80 58.8
Oeu013760.1 Olea europaea HOM05D003477 ORTHO05D004043 3.5e-14 81.6 78 60.3
SalBow3G1026 Salvia bowleyana HOM05D003477 ORTHO05D004043 3.5e-14 81.6 81 60.5
arahy.Tifrunner.gnm1.ann1.S3TCSS Arachis hypogaea HOM05D003477 ORTHO05D004043 6.0e-14 80.9 75 58.7
Sed0021400 Sechium edule HOM05D003477 ORTHO05D004043 6.0e-14 80.9 72 61.1
vmacro01991 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 6.0e-14 80.9 76 63.2
Psat6g216680 Pisum sativum HOM05D003477 ORTHO05D004043 1.3e-13 79.7 77 58.4
FvH4_2g04800 Fragaria vesca HOM05D003477 ORTHO05D004043 2.3e-13 79.0 80 58.8
Manes.10G075200 Manihot esculenta HOM05D003477 ORTHO05D004043 2.3e-13 79.0 75 60.0
Medtr1g107085 Medicago truncatula HOM05D003477 ORTHO05D004043 2.3e-13 79.0 77 59.7
FAN20G0459 Fragaria x ananassa HOM05D003477 ORTHO05D004043 3.0e-13 78.6 71 63.4
Sabra16G0187400 Salix brachista HOM05D003477 ORTHO05D004043 3.0e-13 78.6 85 57.6
Atru.chr5.2447 Acer truncatum HOM05D003477 ORTHO05D004043 3.9e-13 78.2 80 58.8
MBI04_g11440_MAGBIO Magnolia biondii HOM05D003477 ORTHO05D004043 3.9e-13 78.2 77 59.7
Cpa.g.sc106.115 Carica papaya HOM05D003477 ORTHO05D004043 5.1e-13 77.8 50 76.0
FAN15G1392 Fragaria x ananassa HOM05D003477 ORTHO05D004043 5.1e-13 77.8 78 56.4
Gohir.D02G206836 Gossypium hirsutum HOM05D003477 ORTHO05D004043 5.1e-13 77.8 73 63.0
Potri.001G298800 Populus trichocarpa HOM05D003477 ORTHO05D004043 5.1e-13 77.8 77 62.3
FAN24G0602 Fragaria x ananassa HOM05D003477 ORTHO05D004043 6.7e-13 77.4 71 63.4
Aqoxy6G02834 Aquilegia oxysepala HOM05D003477 ORTHO05D004043 8.7e-13 77.0 84 57.1
Manes.07G066700 Manihot esculenta HOM05D003477 ORTHO05D004043 8.7e-13 77.0 73 57.5
Oeu029533.3 Olea europaea HOM05D003477 ORTHO05D004043 8.7e-13 77.0 78 56.4
AL7G17010 Arabidopsis lyrata HOM05D003477 ORTHO05D004043 1.1e-12 76.6 47 78.7
Sopen01g049690 Solanum pennellii HOM05D003477 ORTHO05D004043 1.1e-12 76.6 72 59.7
Gohir.A03G185500 Gossypium hirsutum HOM05D003477 ORTHO05D004043 2.5e-12 75.5 73 61.6
Lsat_1_v5_gn_9_111940 Lactuca sativa HOM05D003477 ORTHO05D004043 2.5e-12 75.5 79 54.4
PSO541G5514 Papaver somniferum HOM05D003477 ORTHO05D004043 2.5e-12 75.5 75 54.7
CsaV3_7G008070 Cucumis sativus L. HOM05D010572 ORTHO05D012753 3.3e-12 75.1 72 58.3
Duzib132G0501 Durio zibethinus HOM05D003477 ORTHO05D004043 3.3e-12 75.1 66 65.2
PSO675G8803 Papaver somniferum HOM05D003477 ORTHO05D004043 3.3e-12 75.1 75 56.0
Ciclev10029666m.g Citrus clementina HOM05D003477 ORTHO05D004043 4.3e-12 74.7 82 57.3
Thecc.02G111100 Theobroma cacao HOM05D003477 ORTHO05D004043 5.7e-12 74.3 73 60.3
Hund16371 Selenicereus undatus HOM05D003477 ORTHO05D004043 7.4e-12 73.9 82 56.1
Rhsim05G0089200 Rhododendron simsii HOM05D003477 ORTHO05D004043 1.3e-11 73.2 69 63.8
Sed0015852 Sechium edule HOM05D003477 ORTHO05D004043 1.6e-11 72.8 65 61.5
Solyc01g107450.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 1.6e-11 72.8 69 62.3
CARHR242520 Cardamine hirsuta HOM05D003477 ORTHO05D004043 2.2e-11 72.4 47 74.5
AUR62003947 Chenopodium quinoa HOM05D003477 ORTHO05D004043 2.8e-11 72.0 70 54.3
AUR62038261 Chenopodium quinoa HOM05D003477 ORTHO05D004043 2.8e-11 72.0 70 54.3
Nn5g30458 Nelumbo nucifera HOM05D003477 ORTHO05D004043 3.7e-11 71.6 72 55.6
Sabra09G0072000 Salix brachista HOM05D003477 ORTHO05D004043 3.7e-11 71.6 86 52.3
SalBow6G1705 Salvia bowleyana HOM05D003477 ORTHO05D004043 3.7e-11 71.6 84 52.4
Duzib248G0862 Durio zibethinus HOM05D003477 ORTHO05D004043 4.8e-11 71.2 72 59.7
Eucgr.H02262 Eucalyptus grandis HOM05D003477 ORTHO05D004043 4.8e-11 71.2 71 50.7
PSO210G4486 Papaver somniferum HOM05D003477 ORTHO05D004043 4.8e-11 71.2 75 57.3
Gohir.D12G021600 Gossypium hirsutum HOM05D003477 ORTHO05D004043 6.3e-11 70.9 73 56.2
CDE01G0745 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 8.2e-11 70.5 73 52.1
Thhalv10026653m.g Eutrema salsugineum HOM05D003477 ORTHO05D004043 1.1e-10 70.1 48 70.8
Gohir.A12G021300 Gossypium hirsutum HOM05D003477 ORTHO05D004043 1.1e-10 70.1 73 57.5
CsaV3_3G018130 Cucumis sativus L. HOM05D003477 ORTHO05D004043 1.4e-10 69.7 75 61.3
GSVIVG01037899001 Vitis vinifera HOM05D003477 ORTHO05D004043 1.4e-10 69.7 73 56.2
Sp7g32050 Schrenkiella parvula HOM05D003477 ORTHO05D004043 2.4e-10 68.9 47 70.2
Cfa004605 Carpinus fangiana HOM05D003477 ORTHO05D004043 3.1e-10 68.6 74 55.4
Haze_10200 Corylus avellana HOM05D003477 ORTHO05D004043 3.1e-10 68.6 74 55.4
Potri.009G093400 Populus trichocarpa HOM05D003477 ORTHO05D004043 3.1e-10 68.6 76 59.2
Dinv42204 Davidia involucrata HOM05D003477 ORTHO05D004043 4.1e-10 68.2 67 58.2
TWI79G1417 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 4.1e-10 68.2 71 54.9
Cc07_g06600 Coffea canephora HOM05D003477 ORTHO05D004043 6.9e-10 67.4 87 52.9
DCAR_025766 Daucus carota HOM05D003477 ORTHO05D004043 6.9e-10 67.4 71 54.9
CSS0020585 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 9.0e-10 67.0 72 52.8
arahy.Tifrunner.gnm1.ann1.VE84TY Arachis hypogaea HOM05D003477 ORTHO05D004043 1.5e-09 66.2 67 52.2
CDE02G3617 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 1.5e-09 66.2 85 45.9
Lalb_Chr21g0308261 Lupinus albus HOM05D003477 ORTHO05D004043 2.0e-09 65.9 71 53.5
Nn1g04659 Nelumbo nucifera HOM05D003477 ORTHO05D004043 2.6e-09 65.5 66 56.1
Phvul.007G041500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 3.4e-09 65.1 68 52.9
CSS0007946 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 4.5e-09 64.7 66 59.1
CSS0046932 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 4.5e-09 64.7 66 59.1
Lalb_Chr02g0145231 Lupinus albus HOM05D003477 ORTHO05D004043 4.5e-09 64.7 71 54.9
QL06p040030 Quercus lobata HOM05D003477 ORTHO05D004043 4.5e-09 64.7 65 50.8
Hund06306 Selenicereus undatus HOM05D003477 ORTHO05D004043 4.5e-09 64.7 69 55.1
Actinidia34393 Actinidia chinensis HOM05D003477 ORTHO05D004043 7.6e-09 63.9 67 56.7
Cc02_g19410 Coffea canephora HOM05D003477 ORTHO05D004043 7.6e-09 63.9 72 51.4
Atru.chr3.235 Acer truncatum HOM05D003477 ORTHO05D004043 1.0e-08 63.5 70 50.0
Nitab4.5_0003699g0030 Nicotiana tabacum HOM05D003477 ORTHO05D004043 1.7e-08 62.8 67 58.2
Ca_11060_v3 Cicer arietinum L. HOM05D003477 ORTHO05D004043 2.2e-08 62.4 75 52.0
Eucgr.I01090 Eucalyptus grandis HOM05D003477 ORTHO05D004043 2.2e-08 62.4 65 53.8
Rhsim11G0156400 Rhododendron simsii HOM05D003477 ORTHO05D004043 2.2e-08 62.4 66 57.6
Rhsim11G0157900 Rhododendron simsii HOM05D003477 ORTHO05D004043 2.2e-08 62.4 66 57.6
BcaNung04987 Brassica carinata HOM05D003477 ORTHO05D004043 2.9e-08 62.0 41 68.3
MELO3C031999.2 Cucumis melo HOM05D003477 ORTHO05D013069 2.9e-08 62.0 50 62.0
Nitab4.5_0001439g0010 Nicotiana tabacum HOM05D003477 ORTHO05D004043 3.8e-08 61.6 53 60.4
RcHm_v2.0_Chr6g0254531 Rosa chinensis HOM05D003477 ORTHO05D004043 3.8e-08 61.6 71 56.3
Hma1.2p1_1023F.1_g249010 Hydrangea macrophylla HOM05D003477 ORTHO05D004043 5.0e-08 61.2 66 59.1
Sc08g0001310 Simmondsia chinensis HOM05D003477 ORTHO05D004043 5.0e-08 61.2 49 63.3
Dinv26882 Davidia involucrata HOM05D003477 ORTHO05D004043 6.5e-08 60.8 79 46.8
arahy.Tifrunner.gnm1.ann1.T63M72 Arachis hypogaea HOM05D003477 ORTHO05D004043 8.5e-08 60.5 63 52.4
Sc16g0001450 Simmondsia chinensis HOM05D003477 ORTHO05D004043 8.5e-08 60.5 77 49.4
TAR381G0852 Trochodendron aralioides HOM05D003477 ORTHO05D004043 8.5e-08 60.5 66 53.0
ATR0315G039 Amborella trichopoda HOM05D003477 ORTHO05D004043 1.4e-07 59.7 83 45.8
HanXRQChr03g0068771 Helianthus annuus HOM05D003477 ORTHO05D004043 1.4e-07 59.7 66 50.0
Glyma.20G130500 Glycine max HOM05D003477 ORTHO05D004043 1.9e-07 59.3 74 50.0
Sed0004332 Sechium edule HOM05D003477 ORTHO05D004043 1.9e-07 59.3 70 51.4
Sopen02g037390 Solanum pennellii HOM05D003477 ORTHO05D004043 1.9e-07 59.3 53 56.6
PGSC0003DMG400024979 Solanum tuberosum HOM05D003477 ORTHO05D004043 2.5e-07 58.9 53 56.6
Actinidia16453 Actinidia chinensis HOM05D003477 ORTHO05D004043 3.2e-07 58.5 69 53.6
Actinidia21247 Actinidia chinensis HOM05D003477 ORTHO05D004043 3.2e-07 58.5 69 53.6
MD10G1099700 Malus domestica HOM05D003477 ORTHO05D004043 4.2e-07 58.2 63 54.0
Nitab4.5_0001119g0150 Nicotiana tabacum HOM05D003477 ORTHO05D004043 4.2e-07 58.2 49 61.2
Peaxi162Scf00945g00014 Petunia axillaris HOM05D003477 ORTHO05D004043 4.2e-07 58.2 74 48.6
Ciclev10027007m.g Citrus clementina HOM05D003477 ORTHO05D004043 5.5e-07 57.8 78 42.3
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 7.2e-07 57.4 74 45.9
Lj2g0006602 Lotus japonicus HOM05D003477 ORTHO05D004043 7.2e-07 57.4 42 64.3
Psat2g169360 Pisum sativum HOM05D003477 ORTHO05D004043 7.2e-07 57.4 42 61.9
Ca_24733_v3 Cicer arietinum L. HOM05D002634 ORTHO05D003100 1.6e-06 56.2 42 61.9
Solyc02g092830.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 1.6e-06 56.2 85 45.9
EL10Ac6g15680 Beta vulgaris HOM05D003477 ORTHO05D004043 2.1e-06 55.8 78 42.3
ECA238G3264 Erigeron canadensis HOM05D003477 ORTHO05D004043 2.1e-06 55.8 72 50.0
Lsat_1_v5_gn_2_85381 Lactuca sativa HOM05D003477 ORTHO05D004043 2.1e-06 55.8 76 48.7
RcHm_v2.0_Chr2g0107061 Rosa chinensis HOM05D003477 ORTHO05D004043 2.7e-06 55.5 74 47.3
ECA240G1244 Erigeron canadensis HOM05D003477 ORTHO05D004043 3.6e-06 55.1 64 50.0
FvH4_1g16960 Fragaria vesca HOM05D003477 ORTHO05D004043 3.6e-06 55.1 66 45.5
FAN23G2670 Fragaria x ananassa HOM05D003477 ORTHO05D004043 3.6e-06 55.1 66 45.5
Phvul.002G014500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 3.6e-06 55.1 63 50.8
MD04G1063100 Malus domestica HOM05D006762 ORTHO05D003505 6.1e-06 54.3 72 50.0
Actinidia27974 Actinidia chinensis HOM05D003477 ORTHO05D004043 7.9e-06 53.9 38 65.8
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 7.9e-06 53.9 74 45.9
RcHm_v2.0_Chr7g0203511 Rosa chinensis HOM05D006762 ORTHO05D003505 7.9e-06 53.9 70 45.7


User provided reference genes

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