Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03048 Brassica carinata HOM05D006662 ORTHO05D008378 1.2e-149 533.1 264 100.0
C03p56690 Brassica napus HOM05D006662 ORTHO05D008378 1.2e-112 410.2 201 100.0
BolC3t17953H Brassica oleracea HOM05D006662 ORTHO05D008378 1.2e-112 410.2 201 100.0
A03p45640 Brassica napus HOM05D006662 ORTHO05D008378 1.0e-108 397.1 201 96.5
BraA03t13696Z Brassica rapa HOM05D006662 ORTHO05D008378 5.1e-108 394.8 201 96.0
Sp3g29170 Schrenkiella parvula HOM05D006662 ORTHO05D008378 1.7e-98 363.2 208 87.0
Thhalv10022827m.g Eutrema salsugineum HOM05D006662 ORTHO05D008378 4.2e-94 348.6 213 81.7
CARHR106220 Cardamine hirsuta HOM05D006662 ORTHO05D008378 1.4e-89 333.6 206 82.5
AT2G15890 Arabidopsis thaliana HOM05D006662 ORTHO05D008378 3.1e-89 332.4 207 80.7
Carub.0003s2977 Capsella rubella HOM05D006662 ORTHO05D008378 2.9e-87 325.9 206 81.1
AL3G47680 Arabidopsis lyrata HOM05D006662 ORTHO05D008378 4.2e-86 322.0 205 79.5
BcaB08g34616 Brassica carinata HOM05D006662 ORTHO05D008378 6.1e-85 318.2 168 93.5
Aa31LG8G13410 Aethionema arabicum HOM05D006662 ORTHO05D008378 4.9e-82 308.5 213 74.2
THA.LOC104807344 Tarenaya hassleriana HOM05D006662 ORTHO05D008378 2.9e-74 282.7 211 66.8
Cpa.g.sc62.73 Carica papaya HOM05D006662 ORTHO05D008378 1.2e-61 240.7 212 61.3
RcHm_v2.0_Chr6g0259611 Rosa chinensis HOM05D006662 ORTHO05D008378 1.2e-61 240.7 207 61.4
FAN15G0063 Fragaria x ananassa HOM05D006662 ORTHO05D008378 3.6e-61 239.2 203 63.1
Thecc.02G093600 Theobroma cacao HOM05D006662 ORTHO05D008378 3.6e-61 239.2 209 59.8
CiPaw.05G058200 Carya illinoinensis HOM05D006662 ORTHO05D008378 1.1e-60 237.7 207 59.9
CSS0011742 Camellia sinensis var. sinensis HOM05D006662 ORTHO05D008378 5.2e-60 235.3 208 58.7
FvH4_2g07110 Fragaria vesca HOM05D006662 ORTHO05D008378 1.5e-59 233.8 203 61.6
Gohir.D12G026500 Gossypium hirsutum HOM05D006662 ORTHO05D008378 2.0e-59 233.4 207 59.9
Gohir.A12G027000 Gossypium hirsutum HOM05D006662 ORTHO05D008378 3.4e-59 232.6 209 59.8
Sed0017443 Sechium edule HOM05D006662 ORTHO05D008378 4.4e-59 232.3 174 66.7
FAN20G1592 Fragaria x ananassa HOM05D006662 ORTHO05D008378 5.8e-59 231.9 203 61.1
Hma1.2p1_0584F.1_g183200 Hydrangea macrophylla HOM05D006662 ORTHO05D008378 7.5e-59 231.5 161 72.0
MD05G1073200 Malus domestica HOM05D006662 ORTHO05D008378 9.8e-59 231.1 212 58.5
MD10G1087700 Malus domestica HOM05D006662 ORTHO05D008378 1.7e-58 230.3 212 57.5
ClCG09G017640 Citrullus lanatus HOM05D006662 ORTHO05D008378 2.2e-58 229.9 172 65.1
Eucgr.I01209 Eucalyptus grandis HOM05D006662 ORTHO05D008378 2.9e-58 229.6 180 63.9
Sed0006883 Sechium edule HOM05D006662 ORTHO05D008378 2.9e-58 229.6 189 63.0
CANSAT25G1076 Cannabis sativa HOM05D006662 ORTHO05D008378 8.3e-58 228.0 207 59.9
GSVIVG01031844001 Vitis vinifera HOM05D006662 ORTHO05D008378 1.1e-57 227.6 174 66.1
Prupe.8G113800 Prunus persica HOM05D006662 ORTHO05D008378 1.4e-57 227.3 215 58.6
TWI75G0095 Tripterygium wilfordii HOM05D006662 ORTHO05D008378 3.2e-57 226.1 173 65.9
Potri.009G108200 Populus trichocarpa HOM05D006662 ORTHO05D008378 5.4e-57 225.3 206 55.3
MELO3C021923.2 Cucumis melo HOM05D006662 ORTHO05D008378 7.1e-57 224.9 173 65.9
CsaV3_2G014240 Cucumis sativus L. HOM05D006662 ORTHO05D008378 7.1e-57 224.9 211 55.5
Ah.01g019950 Amaranthus hybridus HOM05D006662 ORTHO05D008378 9.2e-57 224.6 216 53.2
arahy.Tifrunner.gnm1.ann1.XIH6CG Arachis hypogaea HOM05D006662 ORTHO05D008378 1.2e-56 224.2 174 63.2
VMungo0251G2580 Vigna mungo HOM05D006662 ORTHO05D008378 1.2e-56 224.2 203 55.7
TAR381G0443 Trochodendron aralioides HOM05D006662 ORTHO05D008378 2.1e-56 223.4 205 59.0
arahy.Tifrunner.gnm1.ann1.WYH7K2 Arachis hypogaea HOM05D006662 ORTHO05D008378 2.7e-56 223.0 174 62.6
AUR62011410 Chenopodium quinoa HOM05D006662 ORTHO05D008378 2.7e-56 223.0 194 54.6
ECA234G3259 Erigeron canadensis HOM05D006662 ORTHO05D008378 3.5e-56 222.6 168 64.9
Manes.17G095800 Manihot esculenta HOM05D006662 ORTHO05D008378 3.5e-56 222.6 165 66.1
Gorai.008G026800 Gossypium raimondii HOM05D006662 ORTHO05D008378 4.6e-56 222.2 234 54.3
PGR142G1799 Punica granatum HOM05D006662 ORTHO05D008378 4.6e-56 222.2 190 60.5
Sc18g0004870 Simmondsia chinensis HOM05D006662 ORTHO05D008378 6.0e-56 221.9 182 58.8
HanXRQChr16g0505251 Helianthus annuus HOM05D006662 ORTHO05D008378 7.8e-56 221.5 173 64.2
Ciclev10029277m.g Citrus clementina HOM05D006662 ORTHO05D008378 1.7e-55 220.3 212 55.7
Ciclev10029278m.g Citrus clementina HOM05D006662 ORTHO05D008378 1.7e-55 220.3 212 55.2
Peaxi162Scf00016g01334 Petunia axillaris HOM05D006662 ORTHO05D008378 1.7e-55 220.3 172 64.5
Cfa004939 Carpinus fangiana HOM05D006662 ORTHO05D008378 2.3e-55 219.9 206 58.7
COL.COLO4_11735 Corchorus olitorius HOM05D006662 ORTHO05D008378 3.0e-55 219.5 204 57.4
Lsat_1_v5_gn_7_87521 Lactuca sativa HOM05D006662 ORTHO05D008378 3.0e-55 219.5 234 50.4
TWI79G0535 Tripterygium wilfordii HOM05D006662 ORTHO05D008378 3.0e-55 219.5 161 67.1
PSO541G1188 Papaver somniferum HOM05D006662 ORTHO05D008378 3.9e-55 219.2 181 59.7
Nitab4.5_0013034g0030 Nicotiana tabacum HOM05D006662 ORTHO05D008378 6.6e-55 218.4 169 65.1
Nitab4.5_0001401g0110 Nicotiana tabacum HOM05D006662 ORTHO05D008378 1.1e-54 217.6 169 65.1
QL11p039030 Quercus lobata HOM05D006662 ORTHO05D008378 1.1e-54 217.6 172 62.8
AUR62016649 Chenopodium quinoa HOM05D006662 ORTHO05D008378 1.5e-54 217.2 183 57.4
Glyma.02G136700 Glycine max HOM05D006662 ORTHO05D008378 1.5e-54 217.2 204 54.9
QL11p040314 Quercus lobata HOM05D006662 ORTHO05D008378 1.5e-54 217.2 171 63.7
MSTRG.16773 Avicennia marina HOM05D006662 ORTHO05D008378 1.9e-54 216.9 190 57.9
Ca_18646_v3 Cicer arietinum L. HOM05D006662 ORTHO05D008378 2.5e-54 216.5 194 56.2
PSO675G4443 Papaver somniferum HOM05D006662 ORTHO05D008378 2.5e-54 216.5 181 58.6
PGSC0003DMG400025927 Solanum tuberosum HOM05D006662 ORTHO05D008378 2.5e-54 216.5 169 62.7
Nn6g32129 Nelumbo nucifera HOM05D006662 ORTHO05D008378 4.3e-54 215.7 204 54.9
DCAR_022073 Daucus carota HOM05D006662 ORTHO05D008378 5.6e-54 215.3 177 61.0
TPR.G23518 Trifolium pratense HOM05D006662 ORTHO05D008378 7.3e-54 214.9 196 56.6
Lalb_Chr05g0218931 Lupinus albus HOM05D006662 ORTHO05D008378 1.2e-53 214.2 205 56.1
Sopen01g051110 Solanum pennellii HOM05D006662 ORTHO05D008378 1.2e-53 214.2 163 64.4
Lalb_Chr16g0384501 Lupinus albus HOM05D006662 ORTHO05D008378 2.1e-53 213.4 174 60.3
Phvul.003G295900 Phaseolus vulgaris HOM05D006662 ORTHO05D008378 2.1e-53 213.4 176 60.8
unitig_60.g25450 Utricularia gibba HOM05D006662 ORTHO05D008378 2.1e-53 213.4 175 59.4
Cc02_g18370 Coffea canephora HOM05D006662 ORTHO05D008378 3.6e-53 212.6 171 62.6
Lj4g0000402 Lotus japonicus HOM05D006662 ORTHO05D008378 3.6e-53 212.6 204 53.4
Oeu034074.1 Olea europaea HOM05D006662 ORTHO05D008378 3.6e-53 212.6 179 59.2
Oeu034073.1 Olea europaea HOM05D006662 ORTHO05D008378 4.7e-53 212.2 179 59.2
Psat7g120680 Pisum sativum HOM05D006662 ORTHO05D008378 4.7e-53 212.2 201 54.7
Solyc01g108910.4 Solanum lycopersicum HOM05D006662 ORTHO05D008378 6.2e-53 211.8 163 64.4
TAR625G0716 Trochodendron aralioides HOM05D006662 ORTHO05D008378 6.2e-53 211.8 210 55.2
CDE04G2620 Ceratophyllum demersum HOM05D006662 ORTHO05D008378 8.1e-53 211.5 205 53.7
ECA236G2218 Erigeron canadensis HOM05D001803 ORTHO05D001686 1.4e-52 210.7 171 61.4
MSTRG.20127 Avicennia marina HOM05D006662 ORTHO05D008378 6.8e-52 208.4 177 57.6
MBI16_g19891_MAGBIO Magnolia biondii HOM05D006662 ORTHO05D008378 1.5e-51 207.2 183 57.9
Haze_02471 Corylus avellana HOM05D006662 ORTHO05D008378 2.0e-51 206.8 228 51.8
CDE02G2985 Ceratophyllum demersum HOM05D006662 ORTHO05D008378 3.4e-51 206.1 205 51.2
Sabra09G0082500 Salix brachista HOM05D006662 ORTHO05D008378 3.7e-50 202.6 194 54.1
ATR0733G082 Amborella trichopoda HOM05D006662 ORTHO05D008378 1.1e-49 201.1 201 52.7
Medtr4g087160 Medicago truncatula HOM05D006662 ORTHO05D008378 1.4e-49 200.7 161 60.2
Atru.chr5.2838 Acer truncatum HOM05D006662 ORTHO05D008378 4.1e-49 199.1 188 56.9
Manes.15G144700 Manihot esculenta HOM05D006662 ORTHO05D008378 4.1e-49 199.1 174 56.9
Migut.B00297 Erythranthe guttata HOM05D006662 ORTHO05D008378 4.6e-48 195.7 146 63.0
Glyma.07G208750 Glycine max HOM05D006662 ORTHO05D000003 3.9e-47 192.6 181 54.7
Oeu057667.1 Olea europaea HOM05D006662 ORTHO05D008378 1.1e-46 191.0 201 52.2
Duzib132G0812 Durio zibethinus HOM05D006662 ORTHO05D008378 1.9e-46 190.3 203 52.2
SGA_v2.0_scaffold32G13129 Striga asiatica HOM05D006662 ORTHO05D008378 1.1e-44 184.5 186 51.1
Aqoxy6G00923 Aquilegia oxysepala HOM05D006662 ORTHO05D008378 5.2e-44 182.2 181 53.0
EL10Ac9g21803 Beta vulgaris HOM05D006662 ORTHO05D008378 5.8e-43 178.7 169 52.7
SalBow6G2487 Salvia bowleyana HOM05D006662 ORTHO05D008378 5.8e-43 178.7 195 50.8
Hund06197 Selenicereus undatus HOM05D006662 ORTHO05D008378 2.0e-35 153.7 169 47.9
HPP92_017773 Vanilla planifolia HOM05D006662 ORTHO05D008378 1.9e-33 147.1 196 42.3
Zm00001eb058550 Zea mays HOM05D006662 ORTHO05D008378 2.7e-32 143.3 210 41.0
Zm00001eb214110 Zea mays HOM05D006662 ORTHO05D008378 1.7e-31 140.6 212 39.6
Dinv23602 Davidia involucrata HOM05D000546 ORTHO05D000398 5.1e-31 139.0 106 67.0
Actinidia00472 Actinidia chinensis HOM05D006662 ORTHO05D008378 6.6e-31 138.7 157 47.8
Lj9A364T65 Lonicera japonica HOM05D006662 ORTHO05D008378 1.5e-30 137.5 209 42.1
SEGI_00093 Sequoiadendron giganteum HOM05D006662 ORTHO05D008378 1.5e-30 137.5 164 46.3
AagrBONN_evm.TU.Sc2ySwM_117.2125 Anthoceros agrestis HOM05D006662 ORTHO05D008378 9.6e-22 108.2 198 33.3
Duzib052G0855 Durio zibethinus HOM05D006662 ORTHO05D008378 2.1e-21 107.1 102 54.9
Pp3c25_14850 Physcomitrium patens HOM05D006662 ORTHO05D008378 3.7e-21 106.3 183 35.0
SMO351G0555 Selaginella moellendorffii HOM05D006662 ORTHO05D008378 6.2e-21 105.5 185 33.5
Peaxi162Scf00068g00075 Petunia axillaris HOM05D006662 ORTHO05D008378 9.0e-20 101.7 92 57.6
Mapoly0184s0005 Marchantia polymorpha HOM05D006662 ORTHO05D008378 5.8e-19 99.0 194 29.9
BolC3t17954H Brassica oleracea HOM05D003240 ORTHO05D016738 1.0e-18 98.2 47 100.0
C07p46390 Brassica napus HOM05D003240 ORTHO05D016738 6.5e-18 95.5 151 43.0
BolC7t45157H Brassica oleracea HOM05D003240 ORTHO05D016738 6.5e-18 95.5 151 43.0
BcaNung01267 Brassica carinata HOM05D003240 ORTHO05D016738 3.2e-17 93.2 47 93.6
C01p00460 Brassica napus HOM05D003240 ORTHO05D016738 5.5e-17 92.4 47 95.7
Os03g0765500 Oryza sativa ssp. japonica HOM05D006662 ORTHO05D008378 9.3e-17 91.7 183 35.5
BolC8t51497H Brassica oleracea HOM05D003240 ORTHO05D016738 1.6e-16 90.9 47 93.6
HanXRQChr16g0505241 Helianthus annuus HOM05D000009 ORTHO05D000008 3.5e-16 89.7 104 49.0
A08p21510 Brassica napus HOM05D003240 ORTHO05D016738 6.0e-16 89.0 47 89.4
BraA08t34100Z Brassica rapa HOM05D003240 ORTHO05D016738 6.0e-16 89.0 47 89.4
BcaC07g36950 Brassica carinata HOM05D003240 ORTHO05D017503 7.9e-16 88.6 47 91.5
Peaxi162Scf00140g10022 Petunia axillaris HOM05D006662 ORTHO05D008378 1.4e-12 77.8 103 44.7
BcaC03g16736 Brassica carinata HOM05D003240 ORTHO05D039537 4.2e-09 66.2 47 70.2
Rhsim11G0170000 Rhododendron simsii HOM05D006662 ORTHO05D008378 2.7e-08 63.5 107 36.4
C02p46100 Brassica napus HOM05D003240 ORTHO05D039537 7.9e-08 62.0 47 66.0
BraA03t14192Z Brassica rapa HOM05D003240 ORTHO05D017503 3.0e-07 60.1 47 66.0
BcaC08g43497 Brassica carinata HOM05D003240 ORTHO05D017503 1.9e-06 57.4 46 60.9
C06p08830 Brassica napus HOM05D003240 ORTHO05D009426 1.9e-06 57.4 46 60.9
C06p44710 Brassica napus HOM05D003240 ORTHO05D017503 1.9e-06 57.4 46 58.7
BolC6t39036H Brassica oleracea HOM05D003240 ORTHO05D019967 3.3e-06 56.6 102 39.2
BolC6t35961H Brassica oleracea HOM05D003240 ORTHO05D017503 5.7e-06 55.8 46 58.7
C06p39430 Brassica napus HOM05D003240 ORTHO05D017503 7.4e-06 55.5 46 63.0
C06p51580 Brassica napus HOM05D003240 ORTHO05D017503 7.4e-06 55.5 46 63.0


User provided reference genes

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