Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03031 Brassica carinata HOM05D008776 ORTHO05D005587 9.2e-248 859.8 428 100.0
C03p56950 Brassica napus HOM05D008776 ORTHO05D005587 9.2e-248 859.8 428 100.0
BolC3t17973H Brassica oleracea HOM05D008776 ORTHO05D005587 9.2e-248 859.8 428 100.0
A03p45740 Brassica napus HOM05D008776 ORTHO05D005587 3.9e-214 748.0 421 91.7
BraA03t13706Z Brassica rapa HOM05D008776 ORTHO05D005587 1.8e-211 739.2 420 91.0
BcaB08g34642 Brassica carinata HOM05D008776 ORTHO05D005587 1.9e-176 622.9 447 79.0
BcaB03g16349 Brassica carinata HOM05D008776 ORTHO05D005587 6.5e-161 571.2 460 71.5
Sp3g29580 Schrenkiella parvula HOM05D008776 ORTHO05D005587 2.2e-156 556.2 484 68.4
AL3G52490 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 2.6e-154 549.3 471 69.2
Thhalv10022682m.g Eutrema salsugineum HOM05D008776 ORTHO05D005587 2.6e-154 549.3 474 67.9
Carub.0003s3009 Capsella rubella HOM05D008776 ORTHO05D005587 4.5e-154 548.5 476 67.6
BcaC06g36144 Brassica carinata HOM05D008776 ORTHO05D005587 5.5e-152 541.6 444 71.2
BolC7t41148H Brassica oleracea HOM05D008776 ORTHO05D005587 5.5e-152 541.6 444 71.2
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 4.0e-150 535.4 467 67.5
A07p04560 Brassica napus HOM05D008776 ORTHO05D005587 4.0e-150 535.4 452 70.1
BraA07t28245Z Brassica rapa HOM05D008776 ORTHO05D005587 4.0e-150 535.4 452 70.1
C07p07280 Brassica napus HOM05D008776 ORTHO05D005587 3.1e-147 525.8 444 69.8
Aa31LG8G13740 Aethionema arabicum HOM05D008776 ORTHO05D005587 1.6e-106 390.6 493 51.7
THA.LOC104807308 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 3.1e-70 270.0 463 41.0
CARHR106580 Cardamine hirsuta HOM05D008776 ORTHO05D005587 1.9e-67 260.8 209 69.9
BcaC02g07919 Brassica carinata HOM05D008776 ORTHO05D005587 3.8e-60 236.5 140 85.7
CARHR106560 Cardamine hirsuta HOM05D008776 ORTHO05D005587 5.1e-57 226.1 233 60.9
THA.LOC104804555 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 4.8e-47 193.0 358 42.5
BcaC05g25214 Brassica carinata HOM05D008776 ORTHO05D005587 2.9e-44 183.7 150 72.0
C04p04170 Brassica napus HOM05D008776 ORTHO05D005587 3.0e-41 173.7 141 73.0
BolC4t22056H Brassica oleracea HOM05D008776 ORTHO05D005587 3.0e-41 173.7 141 73.0
C05p54830 Brassica napus HOM05D008776 ORTHO05D005587 1.5e-40 171.4 141 72.3
C01p32810 Brassica napus HOM05D008776 ORTHO05D005587 2.6e-40 170.6 141 72.3
BolC5t29828H Brassica oleracea HOM05D008776 ORTHO05D005587 9.7e-40 168.7 141 71.6
BcaC05g29210 Brassica carinata HOM05D008776 ORTHO05D005587 2.8e-39 167.2 133 72.2
AT4G34550 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 5.3e-38 162.9 221 48.9
Carub.0007s0575 Capsella rubella HOM05D008776 ORTHO05D005587 8.5e-36 155.6 314 41.4
BcaC09g49800 Brassica carinata HOM05D008776 ORTHO05D005587 6.8e-33 146.0 133 66.9
A08p16740 Brassica napus HOM05D008776 ORTHO05D005587 8.8e-33 145.6 306 39.2
BraA08t33639Z Brassica rapa HOM05D008776 ORTHO05D005587 8.8e-33 145.6 306 39.2
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 1.8e-30 137.9 396 32.1
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 1.6e-29 134.8 496 28.6
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 4.5e-29 133.3 343 33.2
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 1.3e-28 131.7 467 28.7
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 1.7e-28 131.3 498 28.5
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 1.5e-27 128.3 376 33.5
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 1.5e-27 128.3 396 33.6
Duzib132G0641 Durio zibethinus HOM05D007001 ORTHO05D005587 2.5e-27 127.5 350 33.4
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 3.2e-27 127.1 384 33.3
BcaB03g11826 Brassica carinata HOM05D008776 ORTHO05D005587 1.6e-26 124.8 304 37.5
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 2.1e-26 124.4 419 27.7
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 4.7e-26 123.2 360 36.1
Medtr4g070420 Medicago truncatula HOM05D007001 ORTHO05D005587 4.7e-26 123.2 386 31.1
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 8.0e-26 122.5 490 27.6
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 1.4e-25 121.7 343 30.6
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 1.8e-25 121.3 408 32.4
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 2.3e-25 120.9 348 34.8
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 5.2e-25 119.8 398 31.4
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 3.4e-24 117.1 390 30.8
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 5.7e-24 116.3 398 29.9
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 7.5e-24 115.9 344 31.7
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 1.7e-23 114.8 405 30.4
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 1.7e-23 114.8 448 28.1
Gohir.D12G029100 Gossypium hirsutum HOM05D007001 ORTHO05D005587 2.2e-23 114.4 364 32.4
Gorai.008G029800 Gossypium raimondii HOM05D007001 ORTHO05D005587 8.3e-23 112.5 364 32.1
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 1.1e-22 112.1 382 31.7
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 4.1e-22 110.2 420 29.0
Lalb_Chr03g0025591 Lupinus albus HOM05D007001 ORTHO05D005587 5.4e-22 109.8 382 28.5
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 7.0e-22 109.4 408 30.1
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 2.0e-21 107.8 361 30.2
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 2.0e-21 107.8 344 29.7
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 2.7e-21 107.5 359 30.9
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 2.7e-21 107.5 360 33.1
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 2.7e-21 107.5 365 32.6
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 4.5e-21 106.7 345 31.3
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 5.9e-21 106.3 325 30.2
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 5.9e-21 106.3 352 28.7
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 5.9e-21 106.3 343 28.9
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 5.9e-21 106.3 356 33.1
AL7G16670 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 7.7e-21 105.9 149 49.0
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 1.7e-20 104.8 351 30.2
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 5.0e-20 103.2 383 30.8
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 8.6e-20 102.4 398 28.1
Eucgr.G01689 Eucalyptus grandis HOM05D007001 ORTHO05D005587 1.1e-19 102.1 346 29.2
BolC1t03218H Brassica oleracea HOM05D008776 ORTHO05D005587 1.5e-19 101.7 81 70.4
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 1.9e-19 101.3 350 30.6
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 2.5e-19 100.9 385 30.1
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 3.3e-19 100.5 367 30.0
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 2.8e-18 97.4 368 30.2
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 3.6e-18 97.1 359 29.5
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 3.6e-18 97.1 389 27.2
CARHR242860 Cardamine hirsuta HOM05D008776 ORTHO05D005587 4.7e-18 96.7 148 46.6
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 1.0e-17 95.5 485 26.8
AUR62011300 Chenopodium quinoa HOM05D007001 ORTHO05D005587 1.4e-17 95.1 394 27.2
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 1.4e-17 95.1 341 29.6
arahy.Tifrunner.gnm1.ann1.M1RWF9 Arachis hypogaea HOM05D007001 ORTHO05D005587 1.8e-17 94.7 311 29.6
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 1.8e-17 94.7 396 28.5
MELO3C023308.2 Cucumis melo HOM05D007001 ORTHO05D005587 4.0e-17 93.6 322 31.1
arahy.Tifrunner.gnm1.ann1.I3TCZM Arachis hypogaea HOM05D007001 ORTHO05D005587 8.9e-17 92.4 311 29.3
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 5.7e-16 89.7 332 29.8
EL10Ac9g21706 Beta vulgaris HOM05D007001 ORTHO05D005587 7.5e-16 89.4 339 27.7
C03p85680 Brassica napus HOM05D008776 ORTHO05D005587 1.7e-15 88.2 183 38.3
BolC3t20854H Brassica oleracea HOM05D008776 ORTHO05D005587 1.7e-15 88.2 183 38.3
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 1.7e-15 88.2 292 30.5
Ah.01g019240 Amaranthus hybridus HOM05D007001 ORTHO05D005587 3.7e-15 87.0 339 28.6
DCAR_001566 Daucus carota HOM05D007001 ORTHO05D005587 6.3e-15 86.3 316 32.9
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 6.3e-15 86.3 291 29.9
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 8.3e-15 85.9 415 25.1
Nitab4.5_0000308g0260 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.4e-14 85.1 452 28.3
CsaV3_2G014890 Cucumis sativus L. HOM05D007001 ORTHO05D005587 2.4e-14 84.3 300 31.3
MBI10_g06730_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 7.0e-14 82.8 296 30.7
SGA_v2.0_scaffold125G33736 Striga asiatica HOM05D007001 ORTHO05D005587 7.0e-14 82.8 309 29.4
Peaxi162Scf00016g00623 Petunia axillaris HOM05D007001 ORTHO05D005587 9.2e-14 82.4 441 27.2
Cc02_g17350 Coffea canephora HOM05D007001 ORTHO05D005587 1.6e-13 81.6 349 28.9
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 2.7e-13 80.9 398 26.1
BcaC01g00896 Brassica carinata HOM05D008776 ORTHO05D005587 3.5e-13 80.5 205 36.6
C09p31770 Brassica napus HOM05D008776 ORTHO05D042895 4.6e-13 80.1 130 45.4
BolC9t56034H Brassica oleracea HOM05D008776 ORTHO05D042895 4.6e-13 80.1 130 45.4
ECA240G0129 Erigeron canadensis HOM05D007001 ORTHO05D005587 4.6e-13 80.1 284 29.2
Sabra04G0104900 Salix brachista HOM05D007001 ORTHO05D005587 5.9e-13 79.7 384 26.0
Sed0007775 Sechium edule HOM05D007001 ORTHO05D005587 2.3e-12 77.8 303 27.4
Lalb_Chr01g0002461 Lupinus albus HOM05D007001 ORTHO05D005587 2.9e-12 77.4 223 30.5
Solyc01g109780.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 2.9e-12 77.4 295 29.5
CDE06G0685 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 5.0e-12 76.6 189 32.8
PGSC0003DMG400000714 Solanum tuberosum HOM05D007001 ORTHO05D005587 5.0e-12 76.6 335 27.5
Sopen01g051970 Solanum pennellii HOM05D007001 ORTHO05D005587 6.6e-12 76.3 295 29.2
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 2.5e-11 74.3 236 30.5
ClCG11G004280 Citrullus lanatus HOM05D007001 ORTHO05D005587 5.6e-11 73.2 317 27.1
Nitab4.5_0008874g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.2e-10 72.0 282 30.5
Aqoxy6G01158 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 3.6e-10 70.5 285 28.4
Migut.B00223 Erythranthe guttata HOM05D007001 ORTHO05D005587 4.7e-10 70.1 293 28.7
PSO675G1875 Papaver somniferum HOM05D007001 ORTHO05D005587 4.7e-10 70.1 236 30.1
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 8.0e-10 69.3 301 27.6
Nitab4.5_0007728g0020 Nicotiana tabacum HOM05D007001 ORTHO05D005587 2.3e-09 67.8 229 30.6
SalBow3G2815 Salvia bowleyana HOM05D007001 ORTHO05D005587 3.1e-09 67.4 376 25.0
Nitab4.5_0009972g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 4.0e-09 67.0 427 24.8
PSO170G6310 Papaver somniferum HOM05D007001 ORTHO05D005587 4.0e-09 67.0 311 24.4
SalBow6G2324 Salvia bowleyana HOM05D007001 ORTHO05D005587 1.5e-08 65.1 286 28.3
PSO764G0276 Papaver somniferum HOM05D007001 ORTHO05D005587 3.4e-08 63.9 311 23.5
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.3e-07 62.0 174 29.3
BcaC01g00894 Brassica carinata HOM05D000394 ORTHO05D000299 1.7e-07 61.6 114 38.6
Lsat_1_v5_gn_9_108461 Lactuca sativa HOM05D007001 ORTHO05D005587 2.2e-07 61.2 277 28.9
BcaC01g00895 Brassica carinata HOM05D008776 ORTHO05D005587 1.1e-06 58.9 67 53.7


User provided reference genes

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