Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g03013 Brassica carinata HOM05D003553 ORTHO05D039244 4.4e-83 311.2 156 100.0
BraA07t30565Z Brassica rapa HOM05D003553 ORTHO05D005072 1.1e-33 147.1 124 65.3
BolC6t39911H Brassica oleracea HOM05D003553 ORTHO05D005072 1.9e-33 146.4 124 65.3
A07p29260 Brassica napus HOM05D003553 ORTHO05D005072 5.5e-33 144.8 124 64.5
C06p48750 Brassica napus HOM05D003553 ORTHO05D005072 7.2e-33 144.4 124 65.3
BraA07t31582Z Brassica rapa HOM05D003553 ORTHO05D005072 9.4e-33 144.1 124 64.5
BcaB02g06963 Brassica carinata HOM05D003553 ORTHO05D005072 2.1e-32 142.9 124 65.3
BcaC08g46898 Brassica carinata HOM05D003553 ORTHO05D005072 1.4e-31 140.2 124 65.3
A02p19540 Brassica napus HOM05D003553 ORTHO05D005072 1.8e-31 139.8 124 63.7
C02p32080 Brassica napus HOM05D003553 ORTHO05D005072 1.8e-31 139.8 124 63.7
C06p33160 Brassica napus HOM05D003553 ORTHO05D005072 1.8e-31 139.8 124 62.9
BolC2t09243H Brassica oleracea HOM05D003553 ORTHO05D005072 1.8e-31 139.8 124 63.7
BolC6t38431H Brassica oleracea HOM05D003553 ORTHO05D005072 1.8e-31 139.8 124 62.9
Thhalv10018346m.g Eutrema salsugineum HOM05D003553 ORTHO05D005072 3.0e-31 139.0 124 63.7
AL2G34600 Arabidopsis lyrata HOM05D003553 ORTHO05D005072 3.9e-31 138.7 124 64.5
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 5.1e-31 138.3 124 62.9
Sp5g29830 Schrenkiella parvula HOM05D003553 ORTHO05D005072 8.8e-31 137.5 124 63.7
AT1G74710 Arabidopsis thaliana HOM05D003553 ORTHO05D005072 2.5e-30 136.0 124 63.7
BcaC03g15524 Brassica carinata HOM05D003553 ORTHO05D005072 3.3e-30 135.6 124 63.7
BraA02t06991Z Brassica rapa HOM05D003553 ORTHO05D005072 1.7e-29 133.3 124 61.3
CARHR068010 Cardamine hirsuta HOM05D003553 ORTHO05D005072 4.8e-29 131.7 124 62.1
Carub.0002s2150 Capsella rubella HOM05D003553 ORTHO05D005072 6.3e-29 131.3 124 62.1
Aa31LG4G4940 Aethionema arabicum HOM05D003553 ORTHO05D005072 2.2e-26 122.9 124 58.9
A06p15100 Brassica napus HOM05D003553 ORTHO05D005072 5.0e-26 121.7 137 54.0
BraA06t24624Z Brassica rapa HOM05D003553 ORTHO05D005072 5.0e-26 121.7 137 54.0
Sp1g16850 Schrenkiella parvula HOM05D003553 ORTHO05D005072 1.1e-25 120.6 124 56.5
BcaC07g38956 Brassica carinata HOM05D003553 ORTHO05D005072 1.9e-25 119.8 124 56.5
A08p30110 Brassica napus HOM05D003553 ORTHO05D005072 1.9e-25 119.8 124 56.5
C08p19030 Brassica napus HOM05D003553 ORTHO05D005072 1.9e-25 119.8 124 56.5
BolC8t49526H Brassica oleracea HOM05D003553 ORTHO05D005072 1.9e-25 119.8 124 56.5
BraA08t34946Z Brassica rapa HOM05D003553 ORTHO05D005072 1.9e-25 119.8 124 56.5
AT1G18870 Arabidopsis thaliana HOM05D003553 ORTHO05D005072 2.5e-25 119.4 124 56.5
THA.LOC104813869 Tarenaya hassleriana HOM05D003553 ORTHO05D005072 3.2e-25 119.0 124 56.5
THA.LOC104812556 Tarenaya hassleriana HOM05D003553 ORTHO05D005072 5.5e-25 118.2 123 56.1
Thhalv10007243m.g Eutrema salsugineum HOM05D003553 ORTHO05D005072 7.2e-25 117.9 124 56.5
CARHR019520 Cardamine hirsuta HOM05D003553 ORTHO05D005072 9.4e-25 117.5 137 52.6
Aa31LG7G3710 Aethionema arabicum HOM05D003553 ORTHO05D005072 1.2e-24 117.1 124 54.8
BcaC05g25790 Brassica carinata HOM05D003553 ORTHO05D005072 1.2e-24 117.1 119 56.3
BcaB07g31908 Brassica carinata HOM05D003553 ORTHO05D005072 2.7e-24 115.9 124 55.6
Carub.0001s1852 Capsella rubella HOM05D003553 ORTHO05D005072 3.6e-24 115.5 124 54.8
BolC5t30429H Brassica oleracea HOM05D003553 ORTHO05D005072 4.7e-24 115.2 124 54.8
BcaB03g12949 Brassica carinata HOM05D003553 ORTHO05D005072 1.7e-21 106.7 124 53.2
A06p09090 Brassica napus HOM05D003553 ORTHO05D005072 2.8e-21 105.9 127 52.0
CARHR115670 Cardamine hirsuta HOM05D003553 ORTHO05D005072 3.2e-17 92.4 109 54.1
Atru.chr9.2308 Acer truncatum HOM05D003553 ORTHO05D005072 1.6e-16 90.1 122 43.4
Gohir.A04G049100 Gossypium hirsutum HOM05D003553 ORTHO05D005072 1.4e-15 87.0 124 46.0
Dinv19921 Davidia involucrata HOM05D003553 ORTHO05D005072 2.3e-15 86.3 121 43.0
C05p17290 Brassica napus HOM05D003553 ORTHO05D000856 3.9e-15 85.5 86 58.1
Gohir.A12G175340 Gossypium hirsutum HOM05D003553 ORTHO05D005072 3.9e-15 85.5 124 45.2
Gohir.D05G331200 Gossypium hirsutum HOM05D003553 ORTHO05D005072 5.2e-15 85.1 124 45.2
Gohir.D12G178408 Gossypium hirsutum HOM05D003553 ORTHO05D005072 6.7e-15 84.7 124 45.2
Gorai.009G355100 Gossypium raimondii HOM05D003553 ORTHO05D005072 6.7e-15 84.7 124 45.2
Gorai.008G190900 Gossypium raimondii HOM05D003553 ORTHO05D005072 1.1e-14 84.0 124 44.4
BcaB05g24627 Brassica carinata HOM05D003553 ORTHO05D005072 2.0e-14 83.2 97 51.5
Nn3g17139 Nelumbo nucifera HOM05D003553 ORTHO05D005072 3.3e-14 82.4 127 44.1
Cfa018984 Carpinus fangiana HOM05D003553 ORTHO05D005072 4.4e-14 82.0 121 42.1
Duzib084G0749 Durio zibethinus HOM05D003553 ORTHO05D005072 4.4e-14 82.0 121 42.1
C03p78740 Brassica napus HOM05D009862 ORTHO05D018588 5.7e-14 81.6 93 50.5
MBI11_g14660_MAGBIO Magnolia biondii HOM05D003553 ORTHO05D005072 5.7e-14 81.6 121 41.3
Prupe.5G187000 Prunus persica HOM05D003553 ORTHO05D005072 5.7e-14 81.6 121 43.8
BcaC01g00346 Brassica carinata HOM05D009862 ORTHO05D018588 7.4e-14 81.3 84 52.4
Thecc.03G080100 Theobroma cacao HOM05D003553 ORTHO05D005072 7.4e-14 81.3 124 42.7
CAN.G628.39 Capsicum annuum HOM05D003553 ORTHO05D005072 9.7e-14 80.9 121 39.7
COL.COLO4_05913 Corchorus olitorius HOM05D003553 ORTHO05D005072 9.7e-14 80.9 121 42.1
Eucgr.B00433 Eucalyptus grandis HOM05D003553 ORTHO05D005072 9.7e-14 80.9 130 43.1
Rhsim08G0159300 Rhododendron simsii HOM05D003553 ORTHO05D005072 9.7e-14 80.9 121 40.5
A05p12350 Brassica napus HOM05D009862 ORTHO05D016026 1.3e-13 80.5 93 50.5
BraA05t20174Z Brassica rapa HOM05D009862 ORTHO05D018588 1.3e-13 80.5 93 50.5
BraA07t28641Z Brassica rapa HOM05D009862 ORTHO05D033657 1.3e-13 80.5 93 50.5
Cpa.g.sc17.207 Carica papaya HOM05D003553 ORTHO05D005072 1.3e-13 80.5 121 43.0
DCAR_032137 Daucus carota HOM05D003553 ORTHO05D005072 1.3e-13 80.5 121 40.5
A09p17710 Brassica napus HOM05D009862 ORTHO05D018588 1.7e-13 80.1 93 50.5
BolC2t11493H Brassica oleracea HOM05D009862 ORTHO05D018588 1.7e-13 80.1 93 49.5
Aqoxy3G03280 Aquilegia oxysepala HOM05D003553 ORTHO05D005072 3.7e-13 79.0 120 44.2
C09p18240 Brassica napus HOM05D009862 ORTHO05D033657 3.7e-13 79.0 93 49.5
Lj9A460T56 Lonicera japonica HOM05D003553 ORTHO05D005072 3.7e-13 79.0 121 43.0
Potri.012G070000 Populus trichocarpa HOM05D003553 ORTHO05D005072 4.8e-13 78.6 128 42.2
Sed0007559 Sechium edule HOM05D003553 ORTHO05D005072 4.8e-13 78.6 123 38.2
SalBow5G1335 Salvia bowleyana HOM05D003553 ORTHO05D005072 6.3e-13 78.2 121 41.3
Zm00001eb310840 Zea mays HOM05D003553 ORTHO05D005072 6.3e-13 78.2 121 43.0
Actinidia19057 Actinidia chinensis HOM05D003553 ORTHO05D005072 8.2e-13 77.8 123 40.7
BcaB08g35674 Brassica carinata HOM05D003553 ORTHO05D005072 8.2e-13 77.8 97 49.5
A05p05690 Brassica napus HOM05D009862 ORTHO05D018588 1.1e-12 77.4 93 49.5
A05p19230 Brassica napus HOM05D009862 ORTHO05D018588 1.1e-12 77.4 93 49.5
C09p21100 Brassica napus HOM05D009862 ORTHO05D018588 1.1e-12 77.4 78 55.1
BolC3t21354H Brassica oleracea HOM05D009862 ORTHO05D033657 1.1e-12 77.4 78 55.1
FvH4_5g15420 Fragaria vesca HOM05D003553 ORTHO05D005072 1.1e-12 77.4 123 43.1
PGSC0003DMG400033038 Solanum tuberosum HOM05D003553 ORTHO05D005072 1.1e-12 77.4 121 38.8
Ciclev10024236m.g Citrus clementina HOM05D003553 ORTHO05D005072 1.4e-12 77.0 122 41.8
Solyc06g071030.3 Solanum lycopersicum HOM05D003553 ORTHO05D005072 1.4e-12 77.0 121 38.8
Sopen06g027330 Solanum pennellii HOM05D003553 ORTHO05D005072 1.4e-12 77.0 121 38.8
FAN04G3159 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.8e-12 76.6 122 43.4
CsaV3_1G002150 Cucumis sativus L. HOM05D003553 ORTHO05D005072 2.4e-12 76.3 123 39.0
FAN08G3028 Fragaria x ananassa HOM05D006304 ORTHO05D008584 3.1e-12 75.9 123 43.1
Oeu006476.1 Olea europaea HOM05D003553 ORTHO05D005072 3.1e-12 75.9 120 40.8
Peaxi162Scf00013g00033 Petunia axillaris HOM05D003553 ORTHO05D005072 3.1e-12 75.9 121 38.8
QL10p015682 Quercus lobata HOM05D003553 ORTHO05D005072 3.1e-12 75.9 121 41.3
GSVIVG01008052001 Vitis vinifera HOM05D003553 ORTHO05D005072 3.1e-12 75.9 121 42.1
MSTRG.11397 Avicennia marina HOM05D003553 ORTHO05D005072 5.3e-12 75.1 121 40.5
Migut.I00130 Erythranthe guttata HOM05D003553 ORTHO05D005072 5.3e-12 75.1 126 40.5
Manes.14G075200 Manihot esculenta HOM05D003553 ORTHO05D005072 5.3e-12 75.1 121 41.3
Nitab4.5_0000269g0200 Nicotiana tabacum HOM05D003553 ORTHO05D005072 7.0e-12 74.7 121 38.0
CDE06G2389 Ceratophyllum demersum HOM05D003553 ORTHO05D005072 9.1e-12 74.3 121 39.7
Haze_07373 Corylus avellana HOM05D003553 ORTHO05D005072 9.1e-12 74.3 115 40.9
FAN18G1891 Fragaria x ananassa HOM05D003553 ORTHO05D005072 9.1e-12 74.3 129 41.1
Nitab4.5_0009895g0030 Nicotiana tabacum HOM05D003553 ORTHO05D005072 9.1e-12 74.3 121 38.0
MD06G1188700 Malus domestica HOM05D003553 ORTHO05D005072 1.2e-11 73.9 121 42.1
MSTRG.23042 Avicennia marina HOM05D003553 ORTHO05D005072 2.0e-11 73.2 121 38.0
VMungo0331G1422 Vigna mungo HOM05D003553 ORTHO05D005072 2.0e-11 73.2 121 40.5
RcHm_v2.0_Chr7g0180661 Rosa chinensis HOM05D003553 ORTHO05D005072 2.6e-11 72.8 123 41.5
arahy.Tifrunner.gnm1.ann1.PUHY82 Arachis hypogaea HOM05D003553 ORTHO05D005072 3.5e-11 72.4 121 41.3
ATR1120G170 Amborella trichopoda HOM05D003553 ORTHO05D005072 4.5e-11 72.0 122 41.8
SGA_v2.0_scaffold25G10906 Striga asiatica HOM05D003553 ORTHO05D005072 4.5e-11 72.0 122 39.3
arahy.Tifrunner.gnm1.ann1.D3VYYS Arachis hypogaea HOM05D003553 ORTHO05D005072 5.9e-11 71.6 121 40.5
Lj3g0022540 Lotus japonicus HOM05D003553 ORTHO05D005072 5.9e-11 71.6 121 39.7
arahy.Tifrunner.gnm1.ann1.9TI54L Arachis hypogaea HOM05D003553 ORTHO05D005072 1.0e-10 70.9 121 40.5
CiPaw.12G016200 Carya illinoinensis HOM05D003553 ORTHO05D005072 1.3e-10 70.5 121 37.2
Glyma.03G070600 Glycine max HOM05D003553 ORTHO05D005072 1.3e-10 70.5 121 39.7
Lalb_Chr07g0192981 Lupinus albus HOM05D003553 ORTHO05D005072 1.3e-10 70.5 121 38.8
Cc04_g15460 Coffea canephora HOM05D003553 ORTHO05D005072 1.7e-10 70.1 121 37.2
CSS0033583 Camellia sinensis var. sinensis HOM05D003553 ORTHO05D005072 2.2e-10 69.7 121 39.7
Medtr4g076520 Medicago truncatula HOM05D003553 ORTHO05D005072 2.2e-10 69.7 121 39.7
vmacro17511 Vaccinium macrocarpon HOM05D003553 ORTHO05D005072 2.2e-10 69.7 121 36.4
C06p06430 Brassica napus HOM05D003553 ORTHO05D027688 2.9e-10 69.3 111 44.1
MELO3C017156.2 Cucumis melo HOM05D003553 ORTHO05D005072 2.9e-10 69.3 123 38.2
Glyma.01G104100 Glycine max HOM05D003553 ORTHO05D005072 2.9e-10 69.3 121 39.7
C03p57200 Brassica napus HOM05D009862 ORTHO05D039244 3.8e-10 68.9 41 82.9
ECA247G0496 Erigeron canadensis HOM05D003553 ORTHO05D005072 3.8e-10 68.9 122 39.3
Phvul.010G011700 Phaseolus vulgaris HOM05D003553 ORTHO05D005072 3.8e-10 68.9 121 38.8
Psat7g237240 Pisum sativum HOM05D003553 ORTHO05D005072 5.0e-10 68.6 121 38.0
unitig_750.g28498 Utricularia gibba HOM05D003553 ORTHO05D005072 6.5e-10 68.2 122 38.5
Migut.I00129 Erythranthe guttata HOM05D003553 ORTHO05D005072 8.5e-10 67.8 121 38.0
HanXRQChr14g0461161 Helianthus annuus HOM05D003553 ORTHO05D005072 8.5e-10 67.8 121 38.8
Lsat_1_v5_gn_3_22001 Lactuca sativa HOM05D003553 ORTHO05D005072 1.5e-09 67.0 123 39.0
BcaB02g10729 Brassica carinata HOM05D003553 ORTHO05D016026 2.5e-09 66.2 56 57.1
Os09g0361500 Oryza sativa ssp. japonica HOM05D003553 ORTHO05D005072 2.5e-09 66.2 83 48.2
Sc23g0004450 Simmondsia chinensis HOM05D003553 ORTHO05D005072 2.5e-09 66.2 116 40.5
CiPaw.11G039100 Carya illinoinensis HOM05D003553 ORTHO05D005072 7.2e-09 64.7 123 38.2
FAN13G0685 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.6e-08 63.5 123 40.7
Sabra12G0049900 Salix brachista HOM05D003553 ORTHO05D005072 1.6e-08 63.5 153 33.3
TAR622G0519 Trochodendron aralioides HOM05D003553 ORTHO05D005072 2.1e-08 63.2 82 45.1
Ah.08g217620 Amaranthus hybridus HOM05D003553 ORTHO05D005072 1.0e-07 60.8 128 36.7
BcaB01g02747 Brassica carinata HOM05D003553 ORTHO05D039541 1.0e-07 60.8 57 59.6
EL10Ac1g00671 Beta vulgaris HOM05D003553 ORTHO05D005072 1.4e-07 60.5 124 37.9
Oeu048740.1 Olea europaea HOM05D003553 ORTHO05D005072 1.4e-07 60.5 112 34.8
AUR62038016 Chenopodium quinoa HOM05D003553 ORTHO05D005072 1.8e-07 60.1 116 37.9
AUR62014518 Chenopodium quinoa HOM05D003553 ORTHO05D005072 2.3e-07 59.7 116 37.9
TPR.G24814 Trifolium pratense HOM05D003553 ORTHO05D005072 4.0e-07 58.9 93 38.7
Hund26920 Selenicereus undatus HOM05D003553 ORTHO05D005072 6.7e-07 58.2 116 38.8
ClCG06G016360 Citrullus lanatus HOM05D003553 ORTHO05D005072 4.4e-06 55.5 115 35.7


User provided reference genes

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