Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02964 Brassica carinata HOM05D006294 ORTHO05D007668 1.7e-227 792.3 406 100.0
BcaB08g34688 Brassica carinata HOM05D006294 ORTHO05D007668 3.6e-217 758.1 404 96.8
C03p57830 Brassica napus HOM05D006294 ORTHO05D007668 4.4e-207 724.5 402 91.0
BolC3t18054H Brassica oleracea HOM05D006294 ORTHO05D007668 4.4e-207 724.5 402 91.0
A03p46230 Brassica napus HOM05D006294 ORTHO05D007668 8.8e-200 700.3 402 89.3
BraA03t13747Z Brassica rapa HOM05D006294 ORTHO05D007668 8.8e-200 700.3 402 89.3
Thhalv10022675m.g Eutrema salsugineum HOM05D006294 ORTHO05D007668 2.5e-178 629.0 410 79.5
Sp3g30330 Schrenkiella parvula HOM05D006294 ORTHO05D007668 6.1e-177 624.4 369 85.9
AT2G17033 Arabidopsis thaliana HOM05D006294 ORTHO05D007668 4.1e-173 611.7 410 77.6
AL3G49850 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 1.7e-171 606.3 410 77.1
Carub.0003s3096 Capsella rubella HOM05D006294 ORTHO05D007668 3.1e-168 595.5 400 77.0
Aa31LG8G14230 Aethionema arabicum HOM05D006294 ORTHO05D007668 5.2e-160 568.2 400 72.0
CARHR107360 Cardamine hirsuta HOM05D006294 ORTHO05D007668 1.9e-157 559.7 410 72.9
Thecc.02G053600 Theobroma cacao HOM05D006294 ORTHO05D007668 4.5e-119 432.2 368 59.0
THA.LOC104819661 Tarenaya hassleriana HOM05D006294 ORTHO05D007668 2.9e-118 429.5 378 61.9
Carub.0135s0001 Capsella rubella HOM05D006294 ORTHO05D007668 4.6e-116 422.2 296 72.6
COL.COLO4_18015 Corchorus olitorius HOM05D006294 ORTHO05D007668 7.9e-116 421.4 386 54.9
Gohir.D02G227800 Gossypium hirsutum HOM05D006294 ORTHO05D007668 1.3e-113 414.1 386 56.0
Gorai.005G255600 Gossypium raimondii HOM05D006294 ORTHO05D007668 2.2e-113 413.3 386 55.7
Duzib052G0076 Durio zibethinus HOM05D006294 ORTHO05D007668 8.2e-113 411.4 368 57.3
Ciclev10028424m.g Citrus clementina HOM05D006294 ORTHO05D007668 1.6e-108 397.1 388 54.9
Manes.04G070000 Manihot esculenta HOM05D006294 ORTHO05D007668 1.0e-107 394.4 399 51.4
CANSAT25G0635 Cannabis sativa HOM05D006294 ORTHO05D007668 3.0e-107 392.9 382 54.7
CiPaw.06G119700 Carya illinoinensis HOM05D006294 ORTHO05D007668 3.0e-107 392.9 376 52.9
Rhsim11G0194300 Rhododendron simsii HOM05D006294 ORTHO05D007668 5.1e-107 392.1 369 53.9
RcHm_v2.0_Chr6g0279111 Rosa chinensis HOM05D006294 ORTHO05D007668 6.7e-107 391.7 386 52.1
Haze_02090 Corylus avellana HOM05D006294 ORTHO05D007668 8.8e-107 391.3 349 55.6
vmacro02296 Vaccinium macrocarpon HOM05D006294 ORTHO05D007668 1.5e-106 390.6 367 53.7
Actinidia18031 Actinidia chinensis HOM05D006294 ORTHO05D007668 2.5e-106 389.8 376 53.2
FvH4_2g15760 Fragaria vesca HOM05D006294 ORTHO05D007668 9.7e-106 387.9 358 54.2
FAN24G2955 Fragaria x ananassa HOM05D006294 ORTHO05D007668 9.7e-106 387.9 358 54.2
CSS0011609 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 3.7e-105 386.0 358 55.6
CSS0032021 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 3.7e-105 386.0 358 55.6
Dinv41907 Davidia involucrata HOM05D006294 ORTHO05D007668 1.8e-104 383.6 353 56.9
FAN27G0563 Fragaria x ananassa HOM05D006294 ORTHO05D007668 2.4e-104 383.3 372 51.9
QL11p052544 Quercus lobata HOM05D006294 ORTHO05D007668 2.4e-104 383.3 364 53.0
Sed0001766 Sechium edule HOM05D006294 ORTHO05D007668 2.4e-104 383.3 389 52.2
Prupe.8G170200 Prunus persica HOM05D006294 ORTHO05D007668 4.1e-104 382.5 356 54.8
FAN15G3675 Fragaria x ananassa HOM05D006294 ORTHO05D007668 5.3e-104 382.1 372 52.4
TWI79G1609 Tripterygium wilfordii HOM05D006294 ORTHO05D007668 2.2e-102 376.7 386 52.8
MD10G1129400 Malus domestica HOM05D006294 ORTHO05D007668 6.5e-102 375.2 358 53.6
Lj5A175T99 Lonicera japonica HOM05D006294 ORTHO05D007668 3.3e-98 362.8 351 53.0
Potri.009G139300 Populus trichocarpa HOM05D006294 ORTHO05D007668 4.4e-98 362.5 360 52.5
PGR142G2258 Punica granatum HOM05D006294 ORTHO05D007668 4.4e-98 362.5 370 49.7
ClCG02G011140 Citrullus lanatus HOM05D006294 ORTHO05D007668 2.6e-95 353.2 374 49.2
Hma1.2p1_0032F.1_g019100 Hydrangea macrophylla HOM05D006294 ORTHO05D007668 2.6e-95 353.2 364 53.3
Lalb_Chr06g0163771 Lupinus albus HOM05D006294 ORTHO05D007668 2.9e-94 349.7 354 50.6
MELO3C022147.2 Cucumis melo HOM05D006294 ORTHO05D007668 1.4e-93 347.4 394 48.2
CsaV3_5G039720 Cucumis sativus L. HOM05D006294 ORTHO05D007668 5.5e-93 345.5 394 48.0
Cc09_g10390 Coffea canephora HOM05D006294 ORTHO05D007668 9.4e-93 344.7 353 52.1
arahy.Tifrunner.gnm1.ann1.DZVX1N Arachis hypogaea HOM05D006294 ORTHO05D007668 8.0e-92 341.7 355 49.6
Rhsim11G0078500 Rhododendron simsii HOM05D006294 ORTHO05D007668 2.3e-91 340.1 358 49.7
arahy.Tifrunner.gnm1.ann1.DS4D2V Arachis hypogaea HOM05D006294 ORTHO05D007668 5.2e-91 339.0 355 49.3
Lj5g0013499 Lotus japonicus HOM05D006294 ORTHO05D007668 1.1e-90 337.8 398 45.7
Cfa005297 Carpinus fangiana HOM05D006294 ORTHO05D007668 4.1e-88 329.3 385 45.7
Ah.11g046440 Amaranthus hybridus HOM05D006294 ORTHO05D007668 7.0e-88 328.6 360 46.9
SalBow1G5734 Salvia bowleyana HOM05D006294 ORTHO05D007668 2.9e-86 323.2 356 48.6
Lsat_1_v5_gn_4_70040 Lactuca sativa HOM05D006294 ORTHO05D007668 6.5e-86 322.0 353 48.2
PSO541G2965 Papaver somniferum HOM05D006294 ORTHO05D007668 3.2e-85 319.7 352 48.3
Cpa.g.sc20.124 Carica papaya HOM05D006294 ORTHO05D007668 2.1e-84 317.0 401 46.4
Migut.B00046 Erythranthe guttata HOM05D006294 ORTHO05D007668 1.4e-83 314.3 353 46.5
TPR.G2447 Trifolium pratense HOM05D006294 ORTHO05D007668 1.8e-83 313.9 388 45.4
HanXRQChr10g0300361 Helianthus annuus HOM05D006294 ORTHO05D007668 1.2e-82 311.2 351 47.6
ECA234G3875 Erigeron canadensis HOM05D006294 ORTHO05D007668 2.6e-82 310.1 354 45.5
TPR.G2441 Trifolium pratense HOM05D006294 ORTHO05D007668 2.6e-82 310.1 358 47.2
FAN20G2719 Fragaria x ananassa HOM05D006294 ORTHO05D007668 5.7e-82 308.9 295 51.5
Glyma.20G105600 Glycine max HOM05D006294 ORTHO05D007668 1.7e-81 307.4 385 45.7
Nn5g30865 Nelumbo nucifera HOM05D006294 ORTHO05D007668 1.1e-80 304.7 358 46.1
GSVIVG01023965001 Vitis vinifera HOM05D006294 ORTHO05D007668 1.4e-80 304.3 372 46.8
AL3G49870 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 2.4e-80 303.5 190 76.8
Oeu045089.1 Olea europaea HOM05D006294 ORTHO05D007668 5.9e-79 298.9 369 45.5
unitig_21.g20844 Utricularia gibba HOM05D006294 ORTHO05D007668 4.7e-76 289.3 351 43.9
VMungo0720G0114 Vigna mungo HOM05D006294 ORTHO05D007668 6.1e-76 288.9 358 45.5
Medtr1g113720 Medicago truncatula HOM05D006294 ORTHO05D007668 3.0e-75 286.6 385 42.9
Phvul.007G017200 Phaseolus vulgaris HOM05D006294 ORTHO05D007668 4.0e-75 286.2 358 45.0
Atru.BG.70.p Acer truncatum HOM05D006294 ORTHO05D007668 7.5e-74 282.0 293 51.5
Nitab4.5_0028029g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 1.2e-71 274.6 358 44.7
Eucgr.I01461 Eucalyptus grandis HOM05D006294 ORTHO05D007668 3.8e-70 269.6 385 43.4
Sabra09G0107900 Salix brachista HOM05D006294 ORTHO05D007668 9.8e-66 255.0 360 41.7
Lsat_1_v5_gn_6_58781 Lactuca sativa HOM05D006294 ORTHO05D007668 2.2e-65 253.8 280 46.8
Gohir.A03G206400 Gossypium hirsutum HOM05D006294 ORTHO05D007668 2.7e-63 246.9 386 40.4
PSO675G2411 Papaver somniferum HOM05D006294 ORTHO05D007668 7.8e-63 245.4 351 40.7
MSTRG.19967 Avicennia marina HOM05D006294 ORTHO05D007668 1.7e-62 244.2 385 38.7
Nitab4.5_0016084g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 3.9e-62 243.0 358 41.6
MBI05_g12855_MAGBIO Magnolia biondii HOM05D006294 ORTHO05D007668 1.2e-60 238.0 357 41.5
CAN.G1.72 Capsicum annuum HOM05D006294 ORTHO05D007668 1.6e-60 237.7 358 40.5
ATR0661G309 Amborella trichopoda HOM05D006294 ORTHO05D007668 8.0e-60 235.3 365 37.8
PGSC0003DMG400018933 Solanum tuberosum HOM05D006294 ORTHO05D007668 6.8e-59 232.3 359 40.4
Peaxi162Scf00042g01217 Petunia axillaris HOM05D006294 ORTHO05D007668 2.6e-58 230.3 382 37.7
Solyc10g055700.2 Solanum lycopersicum HOM05D006294 ORTHO05D007668 5.8e-58 229.2 359 39.8
Sopen00g003210 Solanum pennellii HOM05D006294 ORTHO05D007668 9.8e-58 228.4 359 39.6
Aqoxy6G01907 Aquilegia oxysepala HOM05D006294 ORTHO05D007668 1.7e-57 227.6 361 37.1
Ca_03291_v3 Cicer arietinum L. HOM05D006294 ORTHO05D007668 2.0e-55 220.7 260 43.8
SGA_v2.0_scaffold32G13314 Striga asiatica HOM05D006294 ORTHO05D007668 4.6e-55 219.5 369 36.3
Nn6g32171 Nelumbo nucifera HOM05D006294 ORTHO05D007668 8.6e-46 188.7 181 51.9
Sc14g0000720 Simmondsia chinensis HOM05D006294 ORTHO05D007668 1.1e-43 181.8 187 49.2
CDE05G1346 Ceratophyllum demersum HOM05D006294 ORTHO05D007668 1.8e-43 181.0 357 35.0
Os02g0120000 Oryza sativa ssp. japonica HOM05D006294 ORTHO05D007668 7.8e-39 165.6 368 32.3
Zm00001eb230250 Zea mays HOM05D006294 ORTHO05D007668 6.6e-38 162.5 361 32.4
arahy.Tifrunner.gnm1.ann1.K1Y931 Arachis hypogaea HOM05D006294 ORTHO05D007668 1.8e-35 154.5 170 44.1
Nn1g05690 Nelumbo nucifera HOM05D006294 ORTHO05D007668 4.6e-31 139.8 128 55.5
arahy.Tifrunner.gnm1.ann1.SDBD8X Arachis hypogaea HOM05D006294 ORTHO05D007668 8.7e-30 135.6 178 41.6
HPP92_004929 Vanilla planifolia HOM05D006294 ORTHO05D007668 1.2e-26 125.2 203 37.9
arahy.Tifrunner.gnm1.ann1.DT0J5B Arachis hypogaea HOM05D006294 ORTHO05D007668 1.9e-24 117.9 139 43.9
arahy.Tifrunner.gnm1.ann1.0NBS6K Arachis hypogaea HOM05D006294 ORTHO05D007668 6.0e-23 112.8 124 44.4
arahy.Tifrunner.gnm1.ann1.27KW97 Arachis hypogaea HOM05D006294 ORTHO05D007668 6.0e-23 112.8 124 44.4
HPP92_004930 Vanilla planifolia HOM05D006294 ORTHO05D007668 1.0e-22 112.1 118 46.6
arahy.Tifrunner.gnm1.ann1.A4L1LT Arachis hypogaea HOM05D006294 ORTHO05D007668 3.3e-21 107.1 212 33.5
arahy.Tifrunner.gnm1.ann1.ED6YY1 Arachis hypogaea HOM05D006294 ORTHO05D007668 1.3e-20 105.1 133 42.9
arahy.Tifrunner.gnm1.ann1.PQ7N7P Arachis hypogaea HOM05D006294 ORTHO05D007668 1.5e-18 98.2 134 41.8
arahy.Tifrunner.gnm1.ann1.VQM2ML Arachis hypogaea HOM05D006294 ORTHO05D007668 1.5e-18 98.2 117 43.6
Pp3c16_9880 Physcomitrium patens HOM05D006294 ORTHO05D007668 4.9e-17 93.2 297 23.9
arahy.Tifrunner.gnm1.ann1.5K47IW Arachis hypogaea HOM05D006294 ORTHO05D001225 1.6e-15 88.2 120 37.5
HPP92_004921 Vanilla planifolia HOM05D006294 ORTHO05D007668 1.6e-12 78.2 86 46.5
Sc14g0000730 Simmondsia chinensis HOM05D006294 ORTHO05D007668 6.2e-12 76.3 115 40.9
Mapoly0035s0104 Marchantia polymorpha HOM05D006294 ORTHO05D007668 2.0e-10 71.2 386 22.0
arahy.Tifrunner.gnm1.ann1.VRB4HM Arachis hypogaea HOM05D006294 ORTHO05D007668 2.9e-09 67.4 66 45.5
arahy.Tifrunner.gnm1.ann1.YH938E Arachis hypogaea HOM05D006294 ORTHO05D007668 4.9e-09 66.6 105 36.2
Nn3g21918 Nelumbo nucifera HOM05D006294 ORTHO05D007668 4.2e-08 63.5 62 53.2
Haze_03379 Corylus avellana HOM05D001269 ORTHO05D001083 1.2e-07 62.0 57 56.1
Nn4g23847 Nelumbo nucifera HOM05D006294 ORTHO05D007668 1.6e-07 61.6 62 53.2
arahy.Tifrunner.gnm1.ann1.D2HFCL Arachis hypogaea HOM05D006294 ORTHO05D007668 2.1e-07 61.2 140 31.4
arahy.Tifrunner.gnm1.ann1.QPA1DX Arachis hypogaea HOM05D006294 ORTHO05D007668 4.6e-07 60.1 159 28.9
Peaxi162Scf00126g01125 Petunia axillaris HOM05D001779 ORTHO05D001753 8.7e-06 55.8 100 27.0


User provided reference genes

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