Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 3.5e-52 208.4 136 100.0
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 3.0e-51 205.3 136 99.3
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 3.0e-51 205.3 136 99.3
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 2.1e-33 146.0 134 81.3
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 4.8e-33 144.8 151 76.2
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 4.8e-33 144.8 151 76.2
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 1.4e-32 143.3 152 75.7
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 1.8e-32 142.9 99 80.8
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 4.0e-32 141.7 151 76.2
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 4.0e-32 141.7 151 76.2
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 4.0e-32 141.7 151 76.2
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 2.6e-31 139.0 98 79.6
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 4.9e-30 134.8 96 76.0
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 4.9e-30 134.8 150 74.0
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 9.3e-29 130.6 106 70.8
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 2.1e-28 129.4 116 68.1
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 5.1e-27 124.8 109 68.8
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 8.2e-25 117.5 81 76.5
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.4e-24 115.9 59 91.5
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 9.0e-24 114.0 92 70.7
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 5.9e-23 111.3 68 77.9
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 1.0e-22 110.5 64 82.8
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 6.5e-22 107.8 61 80.3
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 1.4e-21 106.7 89 65.2
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 4.2e-21 105.1 109 57.8
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 7.2e-21 104.4 59 83.1
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 2.1e-20 102.8 64 78.1
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 7.9e-20 100.9 106 57.5
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 7.9e-20 100.9 88 64.8
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 1.4e-19 100.1 56 82.1
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 2.3e-19 99.4 52 88.5
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 3.0e-19 99.0 59 81.4
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 6.7e-19 97.8 87 59.8
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 8.8e-19 97.4 56 83.9
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 8.8e-19 97.4 56 83.9
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.1e-18 97.1 59 79.7
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 1.1e-18 97.1 94 59.6
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 2.5e-18 95.9 99 60.6
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.5e-18 95.9 59 78.0
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 2.5e-18 95.9 88 61.4
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 2.5e-18 95.9 55 83.6
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 2.5e-18 95.9 48 91.7
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 5.7e-18 94.7 57 80.7
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 5.7e-18 94.7 84 64.3
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 7.4e-18 94.4 48 89.6
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 9.7e-18 94.0 63 73.0
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 1.3e-17 93.6 56 78.6
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 2.2e-17 92.8 56 80.4
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 6.3e-17 91.3 46 93.5
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 6.3e-17 91.3 98 57.1
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 1.8e-16 89.7 46 93.5
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 1.8e-16 89.7 54 77.8
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 6.9e-16 87.8 87 59.8
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 6.9e-16 87.8 57 77.2
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 6.9e-16 87.8 83 60.2
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 1.2e-15 87.0 76 63.2
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 1.5e-15 86.7 51 82.4
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.0e-15 86.3 61 70.5
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 3.4e-15 85.5 70 65.7
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 3.4e-15 85.5 53 73.6
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 3.4e-15 85.5 54 77.8
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 5.9e-15 84.7 71 63.4
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 7.7e-15 84.3 106 55.7
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 7.7e-15 84.3 52 75.0
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 1.0e-14 84.0 88 60.2
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 1.0e-14 84.0 59 69.5
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 2.2e-14 82.8 116 48.3
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 2.9e-14 82.4 69 68.1
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 3.8e-14 82.0 47 80.9
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 3.8e-14 82.0 59 69.5
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.8e-14 82.0 82 57.3
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 3.8e-14 82.0 54 75.9
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 6.5e-14 81.3 52 75.0
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 1.1e-13 80.5 100 52.0
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 1.1e-13 80.5 100 52.0
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 1.1e-13 80.5 59 72.9
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 1.4e-13 80.1 53 75.5
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 1.4e-13 80.1 53 75.5
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 2.5e-13 79.3 45 77.8
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 2.5e-13 79.3 108 54.6
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 4.2e-13 78.6 45 80.0
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 5.5e-13 78.2 53 71.7
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 5.5e-13 78.2 50 76.0
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 7.2e-13 77.8 52 75.0
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 9.4e-13 77.4 47 80.9
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 1.2e-12 77.0 38 89.5
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 1.2e-12 77.0 53 69.8
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 1.2e-12 77.0 39 84.6
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 1.2e-12 77.0 97 51.5
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 2.1e-12 76.3 90 57.8
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 2.1e-12 76.3 38 86.8
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 2.1e-12 76.3 48 72.9
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 3.6e-12 75.5 38 86.8
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 3.6e-12 75.5 40 87.5
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 6.1e-12 74.7 93 54.8
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 7.9e-12 74.3 86 50.0
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 1.0e-11 73.9 105 49.5
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 1.4e-11 73.6 76 56.6
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 1.8e-11 73.2 40 85.0
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 1.8e-11 73.2 37 86.5
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 2.3e-11 72.8 109 48.6
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 2.3e-11 72.8 58 69.0
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 2.3e-11 72.8 57 68.4
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 3.0e-11 72.4 44 77.3
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 3.9e-11 72.0 35 91.4
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 3.9e-11 72.0 35 91.4
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 3.9e-11 72.0 90 52.2
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 3.9e-11 72.0 94 51.1
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 5.1e-11 71.6 35 91.4
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 5.1e-11 71.6 35 91.4
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 6.7e-11 71.2 75 56.0
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 8.8e-11 70.9 86 54.7
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 1.1e-10 70.5 66 60.6
Sabra18G0067400 Salix brachista HOM05D005853 ORTHO05D007308 1.1e-10 70.5 36 80.6
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 1.1e-10 70.5 41 78.0
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 1.5e-10 70.1 65 64.6
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 2.0e-10 69.7 51 68.6
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 2.6e-10 69.3 36 83.3
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 3.3e-10 68.9 81 54.3
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 3.3e-10 68.9 74 56.8
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 4.4e-10 68.6 59 61.0
Oeu024066.2 Olea europaea HOM05D005853 ORTHO05D007308 4.4e-10 68.6 160 35.0
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 9.7e-10 67.4 35 80.0
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 1.7e-09 66.6 67 56.7
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 2.8e-09 65.9 111 45.9
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 2.8e-09 65.9 88 52.3
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 3.7e-09 65.5 77 48.1
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 6.3e-09 64.7 39 71.8
HPP92_004788 Vanilla planifolia HOM05D005853 ORTHO05D007308 2.0e-07 59.7 45 66.7


User provided reference genes

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