Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 5.6e-193 677.6 370 100.0
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 1.7e-189 666.0 372 98.4
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 1.7e-189 666.0 372 98.4
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 1.7e-186 656.0 374 96.0
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 2.5e-185 652.1 372 95.7
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 2.9e-181 638.6 372 94.1
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 8.3e-181 637.1 369 94.9
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 7.1e-180 634.0 369 94.6
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 9.6e-177 623.6 369 91.9
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 9.6e-177 623.6 369 91.9
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 1.2e-176 623.2 369 91.9
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 2.8e-176 622.1 369 92.1
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 1.8e-175 619.4 369 92.1
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 5.2e-175 617.8 369 91.1
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 5.2e-175 617.8 369 91.1
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 6.8e-175 617.5 369 91.1
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 1.2e-174 616.7 369 91.3
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 2.6e-174 615.5 369 91.1
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 1.3e-173 613.2 369 90.5
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 2.2e-173 612.5 369 90.8
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 2.9e-173 612.1 371 91.4
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 2.9e-173 612.1 369 90.2
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 2.4e-172 609.0 369 90.5
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 1.0e-162 577.0 366 86.6
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 9.6e-153 543.9 369 82.1
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 1.8e-138 496.5 294 91.5
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 1.3e-136 490.3 371 74.1
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 9.0e-135 484.2 370 73.0
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 1.2e-134 483.8 366 75.7
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 7.7e-134 481.1 317 86.1
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 1.0e-133 480.7 368 73.9
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 1.3e-133 480.3 367 73.3
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 1.7e-133 479.9 365 73.4
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 1.7e-133 479.9 344 77.6
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 4.2e-132 475.3 367 74.1
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 5.5e-132 474.9 355 76.1
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 5.5e-132 474.9 371 72.5
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 9.4e-132 474.2 363 74.4
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 2.7e-131 472.6 372 72.3
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 2.7e-131 472.6 344 77.6
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 3.6e-131 472.2 356 75.3
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 4.6e-131 471.9 355 75.8
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 1.4e-130 470.3 376 71.0
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 1.8e-130 469.9 355 76.1
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 3.0e-130 469.2 374 68.7
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 3.0e-130 469.2 336 78.3
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.0e-130 469.2 352 75.6
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 3.0e-130 469.2 374 71.1
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 3.9e-130 468.8 357 71.4
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 5.1e-130 468.4 359 70.8
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 6.7e-130 468.0 370 70.8
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.1e-129 467.2 352 75.0
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 1.5e-129 466.8 374 70.6
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 7.4e-129 464.5 360 73.6
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 1.7e-128 463.4 366 71.9
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.7e-128 463.4 335 76.7
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 2.2e-128 463.0 365 71.2
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 2.8e-128 462.6 366 71.3
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 2.8e-128 462.6 366 71.6
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 2.8e-128 462.6 375 70.1
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 3.7e-128 462.2 361 74.0
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 3.7e-128 462.2 362 70.7
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 8.2e-128 461.1 334 76.3
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 2.4e-127 459.5 369 71.3
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 5.3e-127 458.4 355 73.5
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 5.3e-127 458.4 327 76.8
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 6.9e-127 458.0 327 76.8
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 1.5e-126 456.8 359 70.5
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 2.6e-126 456.1 367 70.0
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 3.4e-126 455.7 328 75.0
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 4.5e-126 455.3 371 70.9
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 3.8e-125 452.2 322 75.8
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 8.5e-125 451.1 323 77.1
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 1.4e-124 450.3 361 69.5
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 1.9e-124 449.9 370 70.8
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 2.5e-124 449.5 322 75.8
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 3.2e-124 449.1 369 69.9
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 4.2e-124 448.7 377 66.6
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 5.5e-124 448.4 361 70.1
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 5.5e-124 448.4 347 72.9
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 9.4e-124 447.6 367 68.9
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 1.2e-123 447.2 359 71.6
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 1.6e-123 446.8 353 72.8
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 2.7e-123 446.0 380 68.9
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 3.6e-123 445.7 341 72.7
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 3.6e-123 445.7 331 73.4
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 3.6e-123 445.7 344 74.1
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 4.7e-123 445.3 330 74.2
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 4.7e-123 445.3 338 72.5
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 6.1e-123 444.9 363 69.7
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 6.1e-123 444.9 322 74.8
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 1.0e-122 444.1 349 72.8
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 1.0e-122 444.1 369 69.9
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 1.0e-122 444.1 349 66.8
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 1.4e-122 443.7 374 68.2
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.8e-122 443.4 346 69.9
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 1.8e-122 443.4 326 73.6
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 3.9e-122 442.2 374 67.9
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 5.1e-122 441.8 354 69.5
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 8.8e-122 441.0 373 69.7
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 1.1e-121 440.7 377 67.9
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 7.4e-121 438.0 321 75.1
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 7.4e-121 438.0 329 72.9
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 9.7e-121 437.6 353 70.5
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 9.7e-121 437.6 366 68.0
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 2.2e-120 436.4 312 74.7
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 2.8e-120 436.0 366 68.0
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 3.7e-120 435.6 370 67.6
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 8.2e-120 434.5 370 67.0
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 1.4e-119 433.7 319 76.8
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 4.1e-119 432.2 290 83.4
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 4.1e-119 432.2 370 67.0
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 2.9e-117 426.0 371 66.0
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 1.1e-116 424.1 326 71.8
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 1.4e-114 417.2 375 65.6
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 1.8e-114 416.8 349 67.6
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 4.8e-112 408.7 323 70.0
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 2.6e-110 402.9 370 63.8
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 7.7e-110 401.4 369 65.6
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 5.2e-106 388.7 243 89.7
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 6.8e-106 388.3 319 67.1
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 2.0e-105 386.7 372 63.7
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 4.4e-105 385.6 329 65.0
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 2.2e-104 383.3 344 63.1
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 1.7e-101 373.6 326 63.5
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 4.9e-96 355.5 389 55.5
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 5.4e-95 352.1 330 61.2
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 7.0e-95 351.7 247 79.8
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 5.9e-86 322.0 335 57.3
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 1.3e-85 320.9 297 58.9
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 1.4e-82 310.8 206 76.7
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 5.8e-81 305.4 337 54.0
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 1.7e-77 293.9 371 50.7
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.5e-76 290.8 324 56.2
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 3.2e-71 273.1 242 60.3
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 8.4e-56 221.9 208 59.6
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 8.7e-53 211.8 261 49.4
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 1.1e-44 184.9 165 60.6
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 4.8e-43 179.5 139 65.5
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 2.6e-41 173.7 130 70.8
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 1.6e-35 154.5 164 58.5
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 4.9e-32 142.9 103 72.8
BcaB08g34718 Brassica carinata HOM05D004231 ORTHO05D004814 3.5e-30 136.7 78 92.3
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 1.3e-27 128.3 89 69.7
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 3.7e-27 126.7 132 58.3
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 4.8e-27 126.3 68 92.6
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.3e-24 118.2 110 54.5
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 3.8e-24 116.7 128 50.8
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 1.6e-22 111.3 95 62.1
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 1.5e-20 104.8 65 83.1
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 1.9e-20 104.4 117 50.4
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 5.7e-20 102.8 79 65.8
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 2.4e-18 97.4 87 59.8
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 3.8e-16 90.1 282 30.1
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 1.4e-15 88.2 312 31.4
PRCOL_00006973 Prasinoderma coloniale HOM05D004231 ORTHO05D004814 7.2e-15 85.9 310 30.3
AT4G35295 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 2.3e-13 80.9 63 71.4
BolC7t43738H Brassica oleracea HOM05D004231 ORTHO05D004814 1.4e-10 71.6 69 62.3
FAN07G1153 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.4e-10 71.6 49 69.4
FAN15G0284 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.4e-10 70.9 49 69.4
C07p31950 Brassica napus HOM05D004231 ORTHO05D004814 3.1e-10 70.5 73 58.9
Lsat_1_v5_gn_2_1161 Lactuca sativa HOM05D004231 ORTHO05D004814 4.1e-10 70.1 59 61.0
TAR625G0853 Trochodendron aralioides HOM05D000369 ORTHO05D000253 5.3e-10 69.7 177 35.0
FAN05G5401 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.5e-09 68.2 50 66.0
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.5e-09 68.2 51 62.7
Cre02.g082150 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 2.6e-09 67.4 67 52.2
FAN05G3570 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.0e-08 65.5 49 65.3
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 1.7e-08 64.7 44 70.5
BcaB08g35109 Brassica carinata HOM05D004231 ORTHO05D004814 2.9e-08 63.9 43 74.4
FAN25G3338 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.9e-08 63.9 50 62.0
FAN04G2646 Fragaria x ananassa HOM05D004231 ORTHO05D004814 6.5e-08 62.8 76 47.4
Ah.03g140200 Amaranthus hybridus HOM05D004231 ORTHO05D004814 7.9e-06 55.8 67 68.7
FAN23G0549 Fragaria x ananassa HOM05D004231 ORTHO05D004814 7.9e-06 55.8 75 49.3
FAN23G1162 Fragaria x ananassa HOM05D004231 ORTHO05D004814 7.9e-06 55.8 75 49.3


User provided reference genes

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