Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02899 Brassica carinata HOM05D007035 ORTHO05D008774 6.7e-119 430.6 210 100.0
BolC3t18121H Brassica oleracea HOM05D007035 ORTHO05D008774 6.7e-119 430.6 210 100.0
BraA06t26305Z Brassica rapa HOM05D007035 ORTHO05D008774 9.7e-118 426.8 210 99.0
C03p58600 Brassica napus HOM05D007035 ORTHO05D008774 1.3e-117 426.4 210 99.0
A06p33710 Brassica napus HOM05D007035 ORTHO05D008774 4.1e-116 421.4 209 97.1
BcaB08g34751 Brassica carinata HOM05D007035 ORTHO05D008774 2.1e-112 409.1 208 94.7
Sp3g31080 Schrenkiella parvula HOM05D007035 ORTHO05D008774 1.8e-108 396.0 206 90.8
Thhalv10022849m.g Eutrema salsugineum HOM05D007035 ORTHO05D008774 2.4e-108 395.6 206 90.3
AT2G17695 Arabidopsis thaliana HOM05D007035 ORTHO05D008774 2.9e-106 388.7 205 87.3
AL3G50680 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 1.9e-105 386.0 205 87.3
Carub.0003s3179 Capsella rubella HOM05D007035 ORTHO05D008774 3.2e-105 385.2 205 86.8
THA.LOC104807437 Tarenaya hassleriana HOM05D007035 ORTHO05D008774 6.3e-93 344.4 205 76.6
Aa31LG8G14960 Aethionema arabicum HOM05D000088 ORTHO05D000933 8.9e-87 323.9 184 81.5
Thecc.01G009700 Theobroma cacao HOM05D007035 ORTHO05D008774 1.6e-83 313.2 204 70.6
CiPaw.07G005600 Carya illinoinensis HOM05D007035 ORTHO05D008774 2.7e-83 312.4 205 68.3
Atru.chr3.931 Acer truncatum HOM05D007035 ORTHO05D008774 3.5e-83 312.0 206 69.4
Gohir.A02G175400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 1.3e-82 310.1 204 69.1
Gorai.003G004700 Gossypium raimondii HOM05D007035 ORTHO05D008774 1.7e-82 309.7 204 69.1
Gohir.D03G004400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 3.9e-82 308.5 204 69.1
Cfa015701 Carpinus fangiana HOM05D007035 ORTHO05D008774 5.0e-82 308.1 205 67.8
CSS0018213 Camellia sinensis var. sinensis HOM05D007035 ORTHO05D008774 1.5e-81 306.6 204 68.1
Ciclev10026505m.g Citrus clementina HOM05D007035 ORTHO05D008774 1.2e-80 303.5 205 66.8
Actinidia17600 Actinidia chinensis HOM05D007035 ORTHO05D008774 2.1e-80 302.8 204 66.2
MD02G1242600 Malus domestica HOM05D007035 ORTHO05D008774 3.6e-80 302.0 207 65.2
QL06p052348 Quercus lobata HOM05D007035 ORTHO05D008774 4.7e-80 301.6 207 65.2
Rhsim08G0078500 Rhododendron simsii HOM05D007035 ORTHO05D008774 1.4e-79 300.1 206 64.6
Manes.02G111400 Manihot esculenta HOM05D007035 ORTHO05D008774 2.3e-79 299.3 205 65.4
Medtr8g074720 Medicago truncatula HOM05D007035 ORTHO05D008774 5.2e-79 298.1 207 65.2
TWI59G1021 Tripterygium wilfordii HOM05D007035 ORTHO05D008774 5.2e-79 298.1 204 67.2
vmacro18445 Vaccinium macrocarpon HOM05D007035 ORTHO05D008774 5.2e-79 298.1 206 64.6
Eucgr.J02513 Eucalyptus grandis HOM05D007035 ORTHO05D008774 6.8e-79 297.7 208 66.8
Phvul.003G267600 Phaseolus vulgaris HOM05D007035 ORTHO05D008774 1.5e-78 296.6 207 64.3
Prupe.7G176600 Prunus persica HOM05D007035 ORTHO05D008774 1.5e-78 296.6 207 65.2
Lalb_Chr05g0229721 Lupinus albus HOM05D007035 ORTHO05D008774 2.0e-78 296.2 207 63.8
Hma1.2p1_0315F.1_g122740 Hydrangea macrophylla HOM05D007035 ORTHO05D008774 2.6e-78 295.8 203 67.0
Lj4g0012539 Lotus japonicus HOM05D007035 ORTHO05D008774 5.8e-78 294.7 207 63.8
HanXRQChr07g0192541 Helianthus annuus HOM05D007035 ORTHO05D008774 7.5e-78 294.3 204 65.2
FvH4_1g10900 Fragaria vesca HOM05D007035 ORTHO05D008774 9.8e-78 293.9 204 64.2
Ca_03644_v3 Cicer arietinum L. HOM05D007035 ORTHO05D008774 1.3e-77 293.5 207 63.3
Nitab4.5_0001696g0080 Nicotiana tabacum HOM05D007035 ORTHO05D008774 1.3e-77 293.5 204 64.7
FAN28G2890 Fragaria x ananassa HOM05D007035 ORTHO05D008774 1.7e-77 293.1 204 64.2
FAN26G0170 Fragaria x ananassa HOM05D007035 ORTHO05D008774 2.2e-77 292.7 204 64.2
Potri.005G105500 Populus trichocarpa HOM05D007035 ORTHO05D008774 2.2e-77 292.7 205 65.4
TAR628G1604 Trochodendron aralioides HOM05D007035 ORTHO05D008774 2.9e-77 292.4 204 63.7
FAN19G1923 Fragaria x ananassa HOM05D007035 ORTHO05D008774 3.7e-77 292.0 204 63.7
Psat4g103040 Pisum sativum HOM05D007035 ORTHO05D008774 4.9e-77 291.6 207 62.3
CAN.G890.13 Capsicum annuum HOM05D007035 ORTHO05D008774 8.3e-77 290.8 204 64.7
PGR102G2581 Punica granatum HOM05D007035 ORTHO05D008774 1.1e-76 290.4 204 63.2
Lsat_1_v5_gn_2_75101 Lactuca sativa HOM05D007035 ORTHO05D008774 1.4e-76 290.0 204 65.2
FAN23G2784 Fragaria x ananassa HOM05D007035 ORTHO05D008774 3.2e-76 288.9 204 63.7
Oeu008100.1 Olea europaea HOM05D007035 ORTHO05D008774 5.4e-76 288.1 204 64.2
PGSC0003DMG400001578 Solanum tuberosum HOM05D007035 ORTHO05D008774 5.4e-76 288.1 204 65.2
Nn6g31845 Nelumbo nucifera HOM05D007035 ORTHO05D008774 9.2e-76 287.3 208 62.0
TPR.G32013 Trifolium pratense HOM05D007035 ORTHO05D008774 9.2e-76 287.3 195 64.6
Solyc02g083180.4 Solanum lycopersicum HOM05D007035 ORTHO05D008774 3.5e-75 285.4 204 64.7
Sopen02g027940 Solanum pennellii HOM05D007035 ORTHO05D008774 3.5e-75 285.4 204 64.7
MELO3C007951.2 Cucumis melo HOM05D007035 ORTHO05D008774 3.0e-74 282.3 207 61.4
Sed0013381 Sechium edule HOM05D007035 ORTHO05D008774 5.1e-74 281.6 207 60.9
DCAR_027629 Daucus carota HOM05D007035 ORTHO05D008774 8.6e-74 280.8 198 63.6
Ah.10g032510 Amaranthus hybridus HOM05D007035 ORTHO05D008774 1.1e-73 280.4 204 61.8
GSVIVG01006258001 Vitis vinifera HOM05D007035 ORTHO05D008774 1.5e-73 280.0 204 62.3
ClCG01G020680 Citrullus lanatus HOM05D007035 ORTHO05D008774 3.3e-73 278.9 207 60.9
arahy.Tifrunner.gnm1.ann1.JN68AD Arachis hypogaea HOM05D007035 ORTHO05D008774 1.2e-72 276.9 206 61.7
arahy.Tifrunner.gnm1.ann1.Y2NACG Arachis hypogaea HOM05D007035 ORTHO05D008774 1.2e-72 276.9 206 61.7
CANSAT25G1910 Cannabis sativa HOM05D007035 ORTHO05D008774 1.6e-72 276.6 209 61.7
CsaV3_6G047600 Cucumis sativus L. HOM05D007035 ORTHO05D008774 2.8e-72 275.8 208 60.6
EL10Ac9g22991 Beta vulgaris HOM05D007035 ORTHO05D008774 3.6e-72 275.4 204 60.3
Cc07_g12370 Coffea canephora HOM05D007035 ORTHO05D008774 4.7e-72 275.0 203 61.6
SGA_v2.0_scaffold229G43297 Striga asiatica HOM05D001343 ORTHO05D002008 1.4e-71 273.5 204 59.8
SalBow5G2770 Salvia bowleyana HOM05D007035 ORTHO05D008774 1.8e-71 273.1 204 60.3
COL.COLO4_22513 Corchorus olitorius HOM05D007035 ORTHO05D008774 5.2e-71 271.6 202 62.4
Migut.L00741 Erythranthe guttata HOM05D007035 ORTHO05D008774 2.6e-70 269.2 204 59.3
Lj4A228G16 Lonicera japonica HOM05D007035 ORTHO05D008774 3.4e-70 268.9 184 64.7
PSO675G7652 Papaver somniferum HOM05D007035 ORTHO05D008774 5.8e-70 268.1 206 61.2
VMungo0251G2208 Vigna mungo HOM05D007035 ORTHO05D008774 1.7e-69 266.5 187 64.7
PSO541G4772 Papaver somniferum HOM05D007035 ORTHO05D008774 2.2e-69 266.2 206 60.7
CDE09G0622 Ceratophyllum demersum HOM05D007035 ORTHO05D008774 3.7e-69 265.4 207 60.4
AL3G27500 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 4.9e-69 265.0 148 81.8
unitig_88.g27771 Utricularia gibba HOM05D007035 ORTHO05D008774 2.3e-66 256.1 205 57.6
MBI05_g35104_MAGBIO Magnolia biondii HOM05D007035 ORTHO05D008774 1.1e-65 253.8 211 57.8
Peaxi162Scf00300g00123 Petunia axillaris HOM05D007035 ORTHO05D008774 7.3e-65 251.1 174 66.1
ECA238G0027 Erigeron canadensis HOM05D007035 ORTHO05D008774 9.6e-65 250.8 185 61.1
Hund08627 Selenicereus undatus HOM05D007035 ORTHO05D008774 1.1e-63 247.3 176 62.5
QL06p052340 Quercus lobata HOM05D007035 ORTHO05D008774 1.2e-62 243.8 164 64.6
HPP92_014997 Vanilla planifolia HOM05D007035 ORTHO05D008774 5.8e-62 241.5 203 55.7
AUR62032933 Chenopodium quinoa HOM05D007035 ORTHO05D008774 4.9e-61 238.4 163 64.4
Glyma.16G120900 Glycine max HOM05D007035 ORTHO05D008774 4.2e-60 235.3 161 65.2
CARHR107960 Cardamine hirsuta HOM05D007035 ORTHO05D008774 1.7e-58 229.9 121 85.1
Os03g0107600 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 3.0e-58 229.2 216 53.2
Os04g0119300 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 3.0e-58 229.2 216 53.2
RcHm_v2.0_Chr2g0098161 Rosa chinensis HOM05D007035 ORTHO05D008774 6.6e-58 228.0 165 61.2
ATR0661G057 Amborella trichopoda HOM05D007035 ORTHO05D008774 2.1e-56 223.0 187 56.1
Zm00001eb241510 Zea mays HOM05D007035 ORTHO05D008774 2.4e-55 219.5 220 49.5
Sc20g0005390 Simmondsia chinensis HOM05D007035 ORTHO05D008774 5.3e-55 218.4 147 62.6
Cpa.g.sc6.337 Carica papaya HOM05D007035 ORTHO05D008774 2.0e-54 216.5 146 66.4
Dinv40155 Davidia involucrata HOM05D002155 ORTHO05D002215 3.4e-54 215.7 145 63.4
MSTRG.15590 Avicennia marina HOM05D007035 ORTHO05D008774 1.3e-53 213.8 156 59.0
Pp3c1_37080 Physcomitrium patens HOM05D007035 ORTHO05D008774 4.9e-53 211.8 218 47.7
Aqoxy6G01870 Aquilegia oxysepala HOM05D007035 ORTHO05D008774 4.8e-48 195.3 148 60.1
Duzib147G1308 Durio zibethinus HOM05D007035 ORTHO05D008774 1.2e-46 190.7 168 54.8
AUR62017739 Chenopodium quinoa HOM05D007035 ORTHO05D008774 3.8e-45 185.7 122 67.2
Mapoly0027s0184 Marchantia polymorpha HOM05D007035 ORTHO05D008774 4.9e-45 185.3 215 42.3
SMO364G0252 Selaginella moellendorffii HOM05D007035 ORTHO05D008774 2.2e-37 159.8 160 47.5
Prupe.1G268600 Prunus persica HOM05D007035 ORTHO05D008774 1.2e-35 154.1 106 62.3
Prupe.6G001100 Prunus persica HOM05D007035 ORTHO05D008774 2.1e-35 153.3 106 62.3
Eucgr.J01132 Eucalyptus grandis HOM05D007035 ORTHO05D008774 7.9e-35 151.4 145 52.4
AagrBONN_evm.TU.Sc2ySwM_117.3401 Anthoceros agrestis HOM05D007035 ORTHO05D008774 1.8e-31 140.2 156 42.9
SEGI_40855 Sequoiadendron giganteum HOM05D007035 ORTHO05D008774 1.7e-29 133.7 168 39.3
PRCOL_00002518 Prasinoderma coloniale HOM05D007035 ORTHO05D008774 1.0e-26 124.4 247 32.0
Cre17.g720550 Chlamydomonas reinhardtii HOM05D007035 ORTHO05D008774 1.8e-23 113.6 212 31.6
CBR_g48433 Chara braunii HOM05D007035 ORTHO05D008774 2.2e-21 106.7 277 23.8
RcHm_v2.0_Chr5g0036401 Rosa chinensis HOM05D007035 ORTHO05D008774 1.1e-20 104.4 107 46.7
MCO10G322 Micromonas commoda HOM05D007035 ORTHO05D008774 1.9e-20 103.6 158 34.8
Cpa.g.sc6.336 Carica papaya HOM05D007035 ORTHO05D008774 1.5e-14 84.0 59 66.1
RcHm_v2.0_Chr5g0036471 Rosa chinensis HOM05D007035 ORTHO05D008774 1.9e-12 77.0 56 57.1
Peaxi162Scf00300g00119 Petunia axillaris HOM05D007035 ORTHO05D008774 9.4e-12 74.7 61 57.4


User provided reference genes

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