Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02830 Brassica carinata HOM05D006600 ORTHO05D008446 4.7e-171 604.4 287 100.0
BolC3t18247H Brassica oleracea HOM05D006600 ORTHO05D008446 8.8e-170 600.1 287 99.3
C03p59830 Brassica napus HOM05D006600 ORTHO05D008446 9.7e-169 596.7 287 98.6
A06p32700 Brassica napus HOM05D006600 ORTHO05D008446 3.7e-168 594.7 287 98.3
BraA06t26199Z Brassica rapa HOM05D006600 ORTHO05D008446 3.7e-168 594.7 287 98.3
BcaB02g09901 Brassica carinata HOM05D006600 ORTHO05D008446 7.7e-166 587.0 287 96.9
Thhalv10005718m.g Eutrema salsugineum HOM05D006600 ORTHO05D008446 3.1e-151 538.5 287 87.8
AT5G65860 Arabidopsis thaliana HOM05D006600 ORTHO05D008446 8.0e-139 497.3 257 89.9
THA.LOC104807092 Tarenaya hassleriana HOM05D006600 ORTHO05D008446 3.0e-138 495.4 283 78.8
Sp2g28940 Schrenkiella parvula HOM05D006600 ORTHO05D008446 3.1e-135 485.3 237 93.7
PSO675G8764 Papaver somniferum HOM05D006600 ORTHO05D008446 7.8e-134 480.7 286 77.3
Psat5g038240 Pisum sativum HOM05D006600 ORTHO05D008446 2.9e-133 478.8 286 75.5
Ah.15g092540 Amaranthus hybridus HOM05D006600 ORTHO05D008446 6.6e-133 477.6 286 75.2
TPR.G33718 Trifolium pratense HOM05D006600 ORTHO05D008446 2.5e-132 475.7 286 76.6
CiPaw.08G048500 Carya illinoinensis HOM05D006600 ORTHO05D008446 2.1e-131 472.6 283 76.3
Medtr3g102800 Medicago truncatula HOM05D006600 ORTHO05D008446 3.6e-131 471.9 286 74.1
Sabra14G0012400 Salix brachista HOM05D006600 ORTHO05D008446 8.0e-131 470.7 286 75.5
CAN.G1054.24 Capsicum annuum HOM05D006600 ORTHO05D008446 1.0e-130 470.3 283 73.9
Lj4A761T87 Lonicera japonica HOM05D006600 ORTHO05D008446 1.4e-130 469.9 286 73.8
Manes.18G044200 Manihot esculenta HOM05D006600 ORTHO05D008446 5.2e-130 468.0 283 74.9
CDE04G0491 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 6.8e-130 467.6 288 74.7
MBI16_g13383_MAGBIO Magnolia biondii HOM05D006600 ORTHO05D008446 1.2e-129 466.8 284 76.4
Glyma.04G044500 Glycine max HOM05D006600 ORTHO05D008446 3.4e-129 465.3 286 73.8
QL12p037547 Quercus lobata HOM05D006600 ORTHO05D008446 1.3e-128 463.4 283 73.5
HanXRQChr10g0304021 Helianthus annuus HOM05D006600 ORTHO05D008446 2.9e-128 462.2 287 75.6
Carub.0008s2674 Capsella rubella HOM05D006600 ORTHO05D008446 8.3e-128 460.7 238 90.3
AUR62038783 Chenopodium quinoa HOM05D006600 ORTHO05D008446 8.3e-128 460.7 286 71.0
CARHR279850 Cardamine hirsuta HOM05D006600 ORTHO05D008446 1.1e-127 460.3 244 88.1
unitig_62.g23648 Utricularia gibba HOM05D006600 ORTHO05D008446 1.1e-127 460.3 284 73.6
Sopen04g031730 Solanum pennellii HOM05D006600 ORTHO05D008446 9.2e-127 457.2 283 73.5
SGA_v2.0_scaffold244G44349 Striga asiatica HOM05D006600 ORTHO05D008446 7.8e-126 454.1 282 72.3
Oeu050861.1 Olea europaea HOM05D006600 ORTHO05D008446 1.0e-125 453.8 286 72.4
Solyc04g078120.3 Solanum lycopersicum HOM05D006600 ORTHO05D008446 6.6e-125 451.1 283 72.4
Nitab4.5_0003228g0070 Nicotiana tabacum HOM05D006600 ORTHO05D008446 4.7e-123 444.9 283 72.8
Thecc.08G092000 Theobroma cacao HOM05D006600 ORTHO05D008446 4.7e-123 444.9 314 66.2
Nitab4.5_0000934g0020 Nicotiana tabacum HOM05D006600 ORTHO05D008446 5.2e-122 441.4 283 72.4
AUR62037454 Chenopodium quinoa HOM05D006600 ORTHO05D008446 5.8e-121 438.0 286 68.5
PSO541G2868 Papaver somniferum HOM05D006600 ORTHO05D008446 1.3e-120 436.8 286 70.6
SMO228G0045 Selaginella moellendorffii HOM05D006600 ORTHO05D008446 1.0e-117 427.2 285 67.4
HPP92_018760 Vanilla planifolia HOM05D006600 ORTHO05D008446 8.6e-117 424.1 288 68.4
COL.COLO4_28538 Corchorus olitorius HOM05D006600 ORTHO05D008446 1.4e-114 416.8 314 64.3
Os03g0761200 Oryza sativa ssp. japonica HOM05D006600 ORTHO05D008446 3.1e-114 415.6 284 67.3
GSVIVG01009372001 Vitis vinifera HOM05D006600 ORTHO05D008446 5.2e-114 414.8 247 74.5
Zm00001eb214310 Zea mays HOM05D006600 ORTHO05D008446 6.8e-114 414.5 285 66.3
FAN20G2273 Fragaria x ananassa HOM05D006600 ORTHO05D008446 8.3e-112 407.5 256 71.9
Sed0004073 Sechium edule HOM05D006600 ORTHO05D008446 3.5e-110 402.1 234 78.2
Rhsim07G0222000 Rhododendron simsii HOM05D006600 ORTHO05D008446 1.3e-109 400.2 240 75.4
CsaV3_2G026260 Cucumis sativus L. HOM05D006600 ORTHO05D008446 1.7e-109 399.8 233 76.8
VMungo1309G2568 Vigna mungo HOM05D006600 ORTHO05D008446 2.3e-109 399.4 234 76.5
PGSC0003DMG400021533 Solanum tuberosum HOM05D006600 ORTHO05D008446 3.0e-109 399.1 239 74.9
MELO3C010818.2 Cucumis melo HOM05D006600 ORTHO05D008446 3.9e-109 398.7 232 77.2
MSTRG.1040 Avicennia marina HOM05D006600 ORTHO05D008446 1.9e-108 396.4 240 74.2
Glyma.06G045000 Glycine max HOM05D006600 ORTHO05D008446 2.5e-108 396.0 234 75.6
Ca_15912_v3 Cicer arietinum L. HOM05D006600 ORTHO05D008446 4.3e-108 395.2 286 64.3
ClCG08G016350 Citrullus lanatus HOM05D006600 ORTHO05D008446 4.3e-108 395.2 231 76.2
Migut.C00501 Erythranthe guttata HOM05D006600 ORTHO05D008446 5.6e-108 394.8 232 75.0
Lalb_Chr23g0267431 Lupinus albus HOM05D006600 ORTHO05D008446 5.6e-108 394.8 234 75.6
Phvul.009G070400 Phaseolus vulgaris HOM05D006600 ORTHO05D008446 5.6e-108 394.8 234 75.6
arahy.Tifrunner.gnm1.ann1.UTGV4K Arachis hypogaea HOM05D006600 ORTHO05D008446 9.5e-108 394.0 234 75.2
Gorai.009G217900 Gossypium raimondii HOM05D006600 ORTHO05D008446 9.5e-108 394.0 235 75.3
Prupe.1G425800 Prunus persica HOM05D006600 ORTHO05D008446 1.2e-107 393.7 231 74.9
Cpa.g.sc21.115 Carica papaya HOM05D006600 ORTHO05D008446 1.6e-107 393.3 237 73.8
Cc10_g05550 Coffea canephora HOM05D006600 ORTHO05D008446 1.6e-107 393.3 234 75.2
arahy.Tifrunner.gnm1.ann1.H62KW4 Arachis hypogaea HOM05D006600 ORTHO05D008446 2.1e-107 392.9 234 75.2
Aqoxy6G02751 Aquilegia oxysepala HOM05D006600 ORTHO05D008446 3.6e-107 392.1 234 74.8
Cfa013668 Carpinus fangiana HOM05D006600 ORTHO05D008446 3.6e-107 392.1 232 75.9
Lsat_1_v5_gn_6_112481 Lactuca sativa HOM05D006600 ORTHO05D008446 3.6e-107 392.1 236 75.8
Lj1g0008642 Lotus japonicus HOM05D006600 ORTHO05D008446 3.6e-107 392.1 236 74.6
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 6.2e-107 391.3 220 81.8
Ciclev10001599m.g Citrus clementina HOM05D006600 ORTHO05D008446 6.2e-107 391.3 232 75.4
DCAR_020080 Daucus carota HOM05D006600 ORTHO05D008446 8.1e-107 391.0 232 74.1
Gohir.D05G211400 Gossypium hirsutum HOM05D006600 ORTHO05D008446 1.1e-106 390.6 234 75.2
TWI56G0382 Tripterygium wilfordii HOM05D006600 ORTHO05D008446 1.8e-106 389.8 231 74.9
Dinv44978 Davidia involucrata HOM05D006600 ORTHO05D008446 2.4e-106 389.4 231 75.3
Gohir.A05G207900 Gossypium hirsutum HOM05D006600 ORTHO05D008446 3.1e-106 389.0 234 74.4
Atru.chr13.803 Acer truncatum HOM05D006600 ORTHO05D008446 4.0e-106 388.7 231 75.3
vmacro04585 Vaccinium macrocarpon HOM05D006600 ORTHO05D008446 4.0e-106 388.7 235 74.5
Actinidia38095 Actinidia chinensis HOM05D006600 ORTHO05D008446 5.2e-106 388.3 231 75.8
EL10As7g23812 Beta vulgaris HOM05D006600 ORTHO05D008446 5.2e-106 388.3 232 74.6
PGR083G0558 Punica granatum HOM05D006600 ORTHO05D008446 5.2e-106 388.3 231 76.2
Peaxi162Scf00081g00125 Petunia axillaris HOM05D006600 ORTHO05D008446 6.8e-106 387.9 233 74.2
CSS0036700 Camellia sinensis var. sinensis HOM05D006600 ORTHO05D008446 8.9e-106 387.5 231 74.0
MD08G1088100 Malus domestica HOM05D006600 ORTHO05D008446 8.9e-106 387.5 231 74.5
TAR625G0631 Trochodendron aralioides HOM05D006600 ORTHO05D008446 2.0e-105 386.3 232 73.3
BcaC01g02829 Brassica carinata HOM05D006600 ORTHO05D008446 3.4e-105 385.6 188 100.0
Eucgr.F00122 Eucalyptus grandis HOM05D006600 ORTHO05D008446 7.6e-105 384.4 231 75.8
CANSAT35G1599 Cannabis sativa HOM05D006600 ORTHO05D008446 9.9e-105 384.0 234 74.4
FAN15G1504 Fragaria x ananassa HOM05D006600 ORTHO05D008446 2.2e-104 382.9 234 73.5
FAN24G1058 Fragaria x ananassa HOM05D006600 ORTHO05D008446 2.2e-104 382.9 234 73.1
FvH4_2g33350 Fragaria vesca HOM05D006600 ORTHO05D008446 2.9e-104 382.5 234 73.1
SalBow7G4697 Salvia bowleyana HOM05D006600 ORTHO05D008446 6.4e-104 381.3 232 73.3
RcHm_v2.0_Chr6g0309231 Rosa chinensis HOM05D006600 ORTHO05D008446 8.4e-104 380.9 234 72.2
FAN27G3009 Fragaria x ananassa HOM05D006600 ORTHO05D008446 1.4e-103 380.2 234 72.6
Hma1.2p1_0923F.1_g236990 Hydrangea macrophylla HOM05D006600 ORTHO05D008446 3.5e-102 375.6 232 73.3
Haze_22302 Corylus avellana HOM05D006600 ORTHO05D008446 6.0e-102 374.8 223 74.9
ATR0030G048 Amborella trichopoda HOM05D006600 ORTHO05D008446 3.3e-100 369.0 240 71.7
SEGI_28402 Sequoiadendron giganteum HOM05D006600 ORTHO05D008446 9.9e-97 357.5 236 68.2
Duzib093G2027 Durio zibethinus HOM05D006600 ORTHO05D008446 2.9e-96 355.9 225 72.0
AagrBONN_evm.TU.Sc2ySwM_228.1907 Anthoceros agrestis HOM05D006600 ORTHO05D008446 9.6e-92 340.9 236 64.8
Mapoly0063s0069 Marchantia polymorpha HOM05D006600 ORTHO05D008446 4.8e-91 338.6 236 65.3
COL.COLO4_28541 Corchorus olitorius HOM05D006600 ORTHO05D008446 1.2e-89 334.0 210 74.3
Nn1g04625 Nelumbo nucifera HOM05D006600 ORTHO05D008446 1.2e-81 307.4 234 62.0
Cre01.g050050 Chlamydomonas reinhardtii HOM05D006600 ORTHO05D008446 9.9e-81 304.3 338 44.4
AL8G43570 Arabidopsis lyrata HOM05D006600 ORTHO05D008446 2.5e-76 289.7 162 83.3
ECA246G2737 Erigeron canadensis HOM05D006600 ORTHO05D008446 1.6e-75 287.0 185 73.0
Potri.014G019000 Populus trichocarpa HOM05D006600 ORTHO05D008446 8.2e-75 284.6 173 75.1
Hma1.2p1_0923F.1_g236980 Hydrangea macrophylla HOM05D006600 ORTHO05D008446 3.5e-70 269.2 189 67.7
Sc26g0004110 Simmondsia chinensis HOM05D006600 ORTHO05D008446 1.3e-67 260.8 164 73.2
MCO09G534 Micromonas commoda HOM05D006600 ORTHO05D008446 8.5e-64 248.1 263 44.5
Pp3c17_19880 Physcomitrium patens HOM05D006600 ORTHO05D008446 1.4e-61 240.7 160 68.8
CBR_g40512 Chara braunii HOM05D000409 ORTHO05D000184 1.5e-57 227.3 192 53.6
MD15G1072900 Malus domestica HOM05D006600 ORTHO05D008446 1.3e-56 224.2 193 56.0
TAR624G0301 Trochodendron aralioides HOM05D006600 ORTHO05D008446 9.1e-50 201.4 140 63.6
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 6.1e-46 188.7 125 67.2
TAR374G0485 Trochodendron aralioides HOM05D000474 ORTHO05D003648 1.4e-42 177.6 128 60.2
Actinidia08258 Actinidia chinensis HOM05D006600 ORTHO05D008446 5.7e-36 155.6 96 69.8
CBR_g40511 Chara braunii HOM05D000019 ORTHO05D000002 5.5e-23 112.5 115 51.3
Oeu040380.1 Olea europaea HOM05D006600 ORTHO05D008446 2.8e-14 83.6 84 53.6
MBI16_g35586_MAGBIO Magnolia biondii HOM05D006600 ORTHO05D001493 4.0e-13 79.7 60 61.7
GSVIVG01038121001 Vitis vinifera HOM05D006600 ORTHO05D008446 3.2e-10 70.1 48 62.5
Prupe.6G259700 Prunus persica HOM05D037056 ORTHO05D335045 9.5e-07 58.5 46 58.7
Prupe.1G327800 Prunus persica HOM05D037056 ORTHO05D335556 2.1e-06 57.4 46 58.7
Dinv39240 Davidia involucrata HOM05D006600 ORTHO05D008446 2.8e-06 57.0 92 40.2
Prupe.8G103600 Prunus persica HOM05D037056 ORTHO05D336041 6.2e-06 55.8 46 56.5


User provided reference genes

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