Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02829 Brassica carinata HOM05D006600 ORTHO05D008446 6.7e-142 507.3 250 100.0
C03p59830 Brassica napus HOM05D006600 ORTHO05D008446 2.7e-127 458.8 228 99.1
BolC3t18247H Brassica oleracea HOM05D006600 ORTHO05D008446 2.7e-127 458.8 228 99.1
BraA06t26199Z Brassica rapa HOM05D006600 ORTHO05D008446 1.0e-126 456.8 228 97.8
A06p32700 Brassica napus HOM05D006600 ORTHO05D008446 5.2e-126 454.5 228 97.4
BcaB02g09901 Brassica carinata HOM05D006600 ORTHO05D008446 2.8e-124 448.7 228 96.1
Thhalv10005718m.g Eutrema salsugineum HOM05D006600 ORTHO05D008446 3.7e-108 395.2 228 85.1
BcaC01g02830 Brassica carinata HOM05D006600 ORTHO05D008446 1.7e-105 386.3 188 100.0
AT5G65860 Arabidopsis thaliana HOM05D006600 ORTHO05D008446 1.1e-96 357.1 228 77.6
THA.LOC104807092 Tarenaya hassleriana HOM05D006600 ORTHO05D008446 1.1e-96 357.1 229 73.8
PSO675G8764 Papaver somniferum HOM05D006600 ORTHO05D008446 4.4e-93 345.1 228 72.8
COL.COLO4_28541 Corchorus olitorius HOM05D006600 ORTHO05D008446 1.3e-92 343.6 226 71.7
Medtr3g102800 Medicago truncatula HOM05D006600 ORTHO05D008446 4.9e-92 341.7 224 71.0
Ah.15g092540 Amaranthus hybridus HOM05D006600 ORTHO05D008446 1.9e-91 339.7 227 70.5
Psat5g038240 Pisum sativum HOM05D006600 ORTHO05D008446 2.4e-91 339.3 224 70.5
QL12p037547 Quercus lobata HOM05D006600 ORTHO05D008446 3.2e-91 339.0 228 68.9
TPR.G33718 Trifolium pratense HOM05D006600 ORTHO05D008446 4.1e-91 338.6 224 72.8
Sabra14G0012400 Salix brachista HOM05D006600 ORTHO05D008446 7.1e-91 337.8 228 70.6
Glyma.04G044500 Glycine max HOM05D006600 ORTHO05D008446 1.6e-90 336.7 229 70.3
Duzib093G2027 Durio zibethinus HOM05D006600 ORTHO05D008446 3.5e-90 335.5 226 69.0
Manes.18G044200 Manihot esculenta HOM05D006600 ORTHO05D008446 1.3e-89 333.6 228 69.3
CiPaw.08G048500 Carya illinoinensis HOM05D006600 ORTHO05D008446 3.0e-89 332.4 225 71.1
HanXRQChr10g0304021 Helianthus annuus HOM05D006600 ORTHO05D008446 5.1e-89 331.6 228 71.1
SGA_v2.0_scaffold244G44349 Striga asiatica HOM05D006600 ORTHO05D008446 2.5e-88 329.3 224 68.8
MBI16_g13383_MAGBIO Magnolia biondii HOM05D006600 ORTHO05D008446 4.3e-88 328.6 225 71.1
Sp2g28940 Schrenkiella parvula HOM05D006600 ORTHO05D008446 4.3e-88 328.6 228 72.4
unitig_62.g23648 Utricularia gibba HOM05D006600 ORTHO05D008446 1.6e-87 326.6 225 68.0
CDE04G0491 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 1.4e-86 323.6 228 67.5
AUR62038783 Chenopodium quinoa HOM05D006600 ORTHO05D008446 1.8e-86 323.2 227 65.6
Sopen04g031730 Solanum pennellii HOM05D006600 ORTHO05D008446 1.7e-84 316.6 228 65.4
CARHR279850 Cardamine hirsuta HOM05D006600 ORTHO05D008446 4.9e-84 315.1 234 69.2
Solyc04g078120.3 Solanum lycopersicum HOM05D006600 ORTHO05D008446 2.4e-83 312.8 228 64.5
Oeu050861.1 Olea europaea HOM05D006600 ORTHO05D008446 3.2e-83 312.4 224 66.5
Thecc.08G092000 Theobroma cacao HOM05D006600 ORTHO05D008446 4.2e-83 312.0 226 65.9
Nitab4.5_0000934g0020 Nicotiana tabacum HOM05D006600 ORTHO05D008446 7.1e-83 311.2 228 66.7
AL8G43570 Arabidopsis lyrata HOM05D006600 ORTHO05D008446 7.8e-82 307.8 228 68.4
Nitab4.5_0003228g0070 Nicotiana tabacum HOM05D006600 ORTHO05D008446 1.3e-81 307.0 228 65.8
Carub.0008s2674 Capsella rubella HOM05D006600 ORTHO05D008446 1.7e-81 306.6 228 68.4
PSO541G2868 Papaver somniferum HOM05D006600 ORTHO05D008446 9.6e-80 300.8 228 64.5
AUR62037454 Chenopodium quinoa HOM05D006600 ORTHO05D008446 1.8e-78 296.6 227 62.1
CAN.G1054.24 Capsicum annuum HOM05D006600 ORTHO05D008446 1.2e-77 293.9 188 71.3
Lj4A761T87 Lonicera japonica HOM05D006600 ORTHO05D008446 5.8e-77 291.6 188 71.3
HPP92_018760 Vanilla planifolia HOM05D006600 ORTHO05D008446 7.6e-77 291.2 225 63.6
SMO228G0045 Selaginella moellendorffii HOM05D006600 ORTHO05D008446 1.6e-74 283.5 226 60.6
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 2.3e-73 279.6 228 61.4
Zm00001eb214310 Zea mays HOM05D006600 ORTHO05D008446 3.9e-73 278.9 224 59.8
Os03g0761200 Oryza sativa ssp. japonica HOM05D006600 ORTHO05D008446 1.3e-71 273.9 223 59.2
COL.COLO4_28538 Corchorus olitorius HOM05D006600 ORTHO05D008446 3.6e-71 272.3 235 59.6
FAN20G2273 Fragaria x ananassa HOM05D006600 ORTHO05D008446 5.3e-70 268.5 227 58.6
CsaV3_2G026260 Cucumis sativus L. HOM05D006600 ORTHO05D008446 6.4e-68 261.5 228 57.0
Rhsim07G0222000 Rhododendron simsii HOM05D006600 ORTHO05D008446 2.4e-67 259.6 228 57.0
Ca_15912_v3 Cicer arietinum L. HOM05D006600 ORTHO05D008446 3.2e-67 259.2 223 57.8
PGSC0003DMG400021533 Solanum tuberosum HOM05D006600 ORTHO05D008446 4.6e-66 255.4 228 54.8
MSTRG.1040 Avicennia marina HOM05D006600 ORTHO05D008446 2.3e-65 253.1 230 55.7
ClCG08G016350 Citrullus lanatus HOM05D006600 ORTHO05D008446 3.0e-65 252.7 228 56.1
Sed0004073 Sechium edule HOM05D006600 ORTHO05D008446 3.9e-65 252.3 228 56.6
Potri.014G019000 Populus trichocarpa HOM05D006600 ORTHO05D008446 1.5e-64 250.4 228 55.3
VMungo1309G2568 Vigna mungo HOM05D006600 ORTHO05D008446 1.5e-64 250.4 227 55.1
arahy.Tifrunner.gnm1.ann1.UTGV4K Arachis hypogaea HOM05D006600 ORTHO05D008446 1.9e-64 250.0 228 54.4
arahy.Tifrunner.gnm1.ann1.H62KW4 Arachis hypogaea HOM05D006600 ORTHO05D008446 2.5e-64 249.6 228 54.4
ECA246G2737 Erigeron canadensis HOM05D006600 ORTHO05D008446 3.3e-64 249.2 222 58.1
Phvul.009G070400 Phaseolus vulgaris HOM05D006600 ORTHO05D008446 5.6e-64 248.4 227 54.6
Cc10_g05550 Coffea canephora HOM05D006600 ORTHO05D008446 7.4e-64 248.1 228 55.3
Prupe.1G425800 Prunus persica HOM05D006600 ORTHO05D008446 9.6e-64 247.7 228 53.1
Eucgr.F00122 Eucalyptus grandis HOM05D006600 ORTHO05D008446 1.6e-63 246.9 228 55.3
Glyma.06G045000 Glycine max HOM05D006600 ORTHO05D008446 2.1e-63 246.5 227 54.2
Gorai.009G217900 Gossypium raimondii HOM05D006600 ORTHO05D008446 2.1e-63 246.5 226 54.9
Dinv44978 Davidia involucrata HOM05D006600 ORTHO05D008446 3.7e-63 245.7 228 54.4
Lalb_Chr23g0267431 Lupinus albus HOM05D006600 ORTHO05D008446 3.7e-63 245.7 228 54.4
MELO3C010818.2 Cucumis melo HOM05D006600 ORTHO05D008446 4.8e-63 245.4 228 54.8
TWI56G0382 Tripterygium wilfordii HOM05D006600 ORTHO05D008446 4.8e-63 245.4 226 53.5
Migut.C00501 Erythranthe guttata HOM05D006600 ORTHO05D008446 8.1e-63 244.6 224 53.6
vmacro04585 Vaccinium macrocarpon HOM05D006600 ORTHO05D008446 8.1e-63 244.6 228 54.4
DCAR_020080 Daucus carota HOM05D006600 ORTHO05D008446 1.1e-62 244.2 228 53.5
Cfa013668 Carpinus fangiana HOM05D006600 ORTHO05D008446 1.8e-62 243.4 228 53.1
PGR083G0558 Punica granatum HOM05D006600 ORTHO05D008446 1.8e-62 243.4 228 55.3
Nn1g04625 Nelumbo nucifera HOM05D006600 ORTHO05D008446 2.4e-62 243.0 228 53.5
Atru.chr13.803 Acer truncatum HOM05D006600 ORTHO05D008446 3.1e-62 242.7 227 53.7
Ciclev10001599m.g Citrus clementina HOM05D006600 ORTHO05D008446 3.1e-62 242.7 227 53.3
CANSAT35G1599 Cannabis sativa HOM05D006600 ORTHO05D008446 4.0e-62 242.3 228 53.1
Lj1g0008642 Lotus japonicus HOM05D006600 ORTHO05D008446 4.0e-62 242.3 229 52.8
CSS0036700 Camellia sinensis var. sinensis HOM05D006600 ORTHO05D008446 5.3e-62 241.9 228 52.6
Gohir.D05G211400 Gossypium hirsutum HOM05D006600 ORTHO05D008446 5.3e-62 241.9 226 54.0
Gohir.A05G207900 Gossypium hirsutum HOM05D006600 ORTHO05D008446 6.9e-62 241.5 226 54.0
Actinidia38095 Actinidia chinensis HOM05D006600 ORTHO05D008446 1.2e-61 240.7 228 53.1
EL10As7g23812 Beta vulgaris HOM05D006600 ORTHO05D008446 1.2e-61 240.7 271 46.5
Lsat_1_v5_gn_6_112481 Lactuca sativa HOM05D006600 ORTHO05D008446 1.2e-61 240.7 227 55.9
Sc26g0004110 Simmondsia chinensis HOM05D006600 ORTHO05D008446 1.2e-61 240.7 226 52.7
TAR625G0631 Trochodendron aralioides HOM05D006600 ORTHO05D008446 1.2e-61 240.7 228 51.8
Peaxi162Scf00081g00125 Petunia axillaris HOM05D006600 ORTHO05D008446 3.4e-61 239.2 228 52.2
Aqoxy6G02751 Aquilegia oxysepala HOM05D006600 ORTHO05D008446 5.8e-61 238.4 230 53.0
GSVIVG01009372001 Vitis vinifera HOM05D006600 ORTHO05D008446 6.5e-60 235.0 152 69.7
MD08G1088100 Malus domestica HOM05D006600 ORTHO05D008446 8.4e-60 234.6 228 50.9
SalBow7G4697 Salvia bowleyana HOM05D006600 ORTHO05D008446 8.4e-60 234.6 226 50.9
FvH4_2g33350 Fragaria vesca HOM05D006600 ORTHO05D008446 2.5e-59 233.0 227 52.4
FAN15G1504 Fragaria x ananassa HOM05D006600 ORTHO05D008446 2.5e-59 233.0 227 52.9
FAN24G1058 Fragaria x ananassa HOM05D006600 ORTHO05D008446 3.2e-59 232.6 227 52.4
RcHm_v2.0_Chr6g0309231 Rosa chinensis HOM05D006600 ORTHO05D008446 5.5e-59 231.9 227 51.5
Hma1.2p1_0923F.1_g236980 Hydrangea macrophylla HOM05D006600 ORTHO05D008446 1.6e-58 230.3 228 52.2
Hma1.2p1_0923F.1_g236990 Hydrangea macrophylla HOM05D006600 ORTHO05D008446 1.6e-58 230.3 228 52.2
ATR0030G048 Amborella trichopoda HOM05D006600 ORTHO05D008446 5.7e-56 221.9 234 50.9
Haze_22302 Corylus avellana HOM05D006600 ORTHO05D008446 1.6e-55 220.3 228 49.6
FAN27G3009 Fragaria x ananassa HOM05D006600 ORTHO05D008446 1.1e-54 217.6 227 49.8
Pp3c17_19880 Physcomitrium patens HOM05D006600 ORTHO05D008446 6.9e-54 214.9 226 49.1
Cpa.g.sc21.115 Carica papaya HOM05D006600 ORTHO05D008446 9.0e-54 214.5 139 69.8
SEGI_28402 Sequoiadendron giganteum HOM05D006600 ORTHO05D008446 4.5e-53 212.2 223 49.8
TAR624G0301 Trochodendron aralioides HOM05D006600 ORTHO05D008446 6.1e-50 201.8 145 62.1
Cre01.g050050 Chlamydomonas reinhardtii HOM05D006600 ORTHO05D008446 2.3e-49 199.9 282 38.7
Mapoly0063s0069 Marchantia polymorpha HOM05D006600 ORTHO05D008446 2.4e-46 189.9 223 45.3
AagrBONN_evm.TU.Sc2ySwM_228.1907 Anthoceros agrestis HOM05D006600 ORTHO05D008446 3.4e-45 186.0 227 44.5
TAR374G0485 Trochodendron aralioides HOM05D000474 ORTHO05D003648 3.6e-42 176.0 127 59.8
MCO09G534 Micromonas commoda HOM05D006600 ORTHO05D008446 2.5e-35 153.3 216 37.5
Actinidia08258 Actinidia chinensis HOM05D006600 ORTHO05D008446 6.1e-34 148.7 101 65.3
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 8.8e-33 144.8 101 63.4
CBR_g40511 Chara braunii HOM05D000019 ORTHO05D000002 1.7e-28 130.6 151 48.3
GSVIVG01038121001 Vitis vinifera HOM05D006600 ORTHO05D008446 3.7e-23 112.8 87 59.8
CBR_g40512 Chara braunii HOM05D000409 ORTHO05D000184 9.4e-19 98.2 79 54.4
MD15G1072900 Malus domestica HOM05D006600 ORTHO05D008446 1.3e-15 87.8 54 66.7
Oeu040380.1 Olea europaea HOM05D006600 ORTHO05D008446 2.8e-15 86.7 100 49.0
Actinidia08259 Actinidia chinensis HOM05D006600 ORTHO05D008446 4.0e-09 66.2 52 57.7
Prupe.6G259700 Prunus persica HOM05D037056 ORTHO05D335045 8.3e-07 58.5 46 58.7
Prupe.1G327800 Prunus persica HOM05D037056 ORTHO05D335556 1.8e-06 57.4 46 58.7
Prupe.8G103600 Prunus persica HOM05D037056 ORTHO05D336041 5.4e-06 55.8 46 56.5
Actinidia22678 Actinidia chinensis HOM05D006600 ORTHO05D008446 9.2e-06 55.1 53 52.8
MSTRG.3091 Avicennia marina HOM05D002893 ORTHO05D003387 9.2e-06 55.1 101 33.7


User provided reference genes

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