Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02825 Brassica carinata HOM05D008250 ORTHO05D010361 1.8e-23 111.7 56 100.0
BraA06t26203Z Brassica rapa HOM05D008250 ORTHO05D010361 1.8e-23 111.7 56 100.0
BcaB02g09904 Brassica carinata HOM05D008250 ORTHO05D010361 2.4e-23 111.3 56 98.2
C03p59760 Brassica napus HOM05D008250 ORTHO05D010361 1.2e-22 109.0 56 98.2
C03p59770 Brassica napus HOM05D008250 ORTHO05D010361 1.2e-22 109.0 56 98.2
BolC3t18239H Brassica oleracea HOM05D008250 ORTHO05D010361 1.2e-22 109.0 56 98.2
BolC3t18240H Brassica oleracea HOM05D008250 ORTHO05D010361 1.2e-22 109.0 56 98.2
Thhalv10005252m.g Eutrema salsugineum HOM05D008250 ORTHO05D010361 6.6e-21 103.2 56 87.5
Carub.0008s2677 Capsella rubella HOM05D008250 ORTHO05D010361 1.9e-20 101.7 57 91.2
AL8G43594 Arabidopsis lyrata HOM05D008250 ORTHO05D010361 3.6e-19 97.4 57 86.0
AT5G65880 Arabidopsis thaliana HOM05D008250 ORTHO05D010361 8.9e-18 92.8 58 81.0
CARHR279880 Cardamine hirsuta HOM05D008250 ORTHO05D010361 2.2e-16 88.2 56 82.1
Thecc.01G075500 Theobroma cacao HOM05D008250 ORTHO05D010361 2.9e-16 87.8 48 83.3
COL.COLO4_11607 Corchorus olitorius HOM05D008250 ORTHO05D010361 3.7e-16 87.4 48 81.2
Hma1.2p1_1760F.1_g301220 Hydrangea macrophylla HOM05D008250 ORTHO05D010361 3.7e-16 87.4 48 85.4
CiPaw.01G002500 Carya illinoinensis HOM05D008250 ORTHO05D010361 8.3e-16 86.3 55 78.2
Gohir.A12G078200 Gossypium hirsutum HOM05D008250 ORTHO05D010361 1.1e-15 85.9 48 81.2
Gohir.D12G076400 Gossypium hirsutum HOM05D008250 ORTHO05D010361 1.4e-15 85.5 48 79.2
Gorai.008G085000 Gossypium raimondii HOM05D008250 ORTHO05D010361 1.4e-15 85.5 48 79.2
HanXRQChr09g0255361 Helianthus annuus HOM05D008250 ORTHO05D010361 1.9e-15 85.1 56 73.2
ClCG02G012200 Citrullus lanatus HOM05D008250 ORTHO05D010361 2.4e-15 84.7 56 73.2
Lsat_1_v5_gn_4_159680 Lactuca sativa HOM05D008250 ORTHO05D010361 4.1e-15 84.0 54 74.1
Potri.007G006700 Populus trichocarpa HOM05D008250 ORTHO05D010361 4.1e-15 84.0 54 72.2
Sc03g0002500 Simmondsia chinensis HOM05D008250 ORTHO05D010361 4.1e-15 84.0 54 72.2
GSVIVG01002948001 Vitis vinifera HOM05D008250 ORTHO05D010361 4.1e-15 84.0 48 81.2
GSVIVG01004436001 Vitis vinifera HOM05D008250 ORTHO05D010361 4.1e-15 84.0 48 81.2
Ciclev10026916m.g Citrus clementina HOM05D008250 ORTHO05D010361 5.4e-15 83.6 54 72.2
Actinidia16414 Actinidia chinensis HOM05D008250 ORTHO05D010361 9.2e-15 82.8 48 77.1
Aqoxy6G02462 Aquilegia oxysepala HOM05D008250 ORTHO05D010361 1.2e-14 82.4 48 85.4
Nn6g34516 Nelumbo nucifera HOM05D008250 ORTHO05D010361 1.6e-14 82.0 48 81.2
Manes.12G117000 Manihot esculenta HOM05D008250 ORTHO05D010361 2.0e-14 81.6 54 70.4
Atru.chr3.1053 Acer truncatum HOM05D008250 ORTHO05D010361 3.5e-14 80.9 54 70.4
TWI74G1530 Tripterygium wilfordii HOM05D008250 ORTHO05D010361 1.0e-13 79.3 48 77.1
Sed0009961 Sechium edule HOM05D008250 ORTHO05D010361 1.3e-13 79.0 56 66.1
MD02G1189100 Malus domestica HOM05D008250 ORTHO05D010361 2.3e-13 78.2 54 72.2
A06p32730 Brassica napus HOM05D008250 ORTHO05D010361 3.0e-13 77.8 38 100.0
Migut.H00327 Erythranthe guttata HOM05D008250 ORTHO05D010361 3.9e-13 77.4 46 78.3
RcHm_v2.0_Chr2g0108561 Rosa chinensis HOM05D008250 ORTHO05D010361 8.6e-13 76.3 48 70.8
Phvul.003G233500 Phaseolus vulgaris HOM05D008250 ORTHO05D010361 1.1e-12 75.9 54 64.8
Prupe.6G217600 Prunus persica HOM05D008250 ORTHO05D010361 1.1e-12 75.9 54 68.5
Solyc02g092130.2 Solanum lycopersicum HOM05D008250 ORTHO05D010361 4.3e-12 73.9 48 75.0
PGSC0003DMG400021408 Solanum tuberosum HOM05D008250 ORTHO05D010361 1.2e-11 72.4 48 72.9
Glyma.05G107700 Glycine max HOM05D008250 ORTHO05D010361 3.6e-11 70.9 38 81.6
Potri.014G006850 Populus trichocarpa HOM05D008250 ORTHO05D010361 3.6e-11 70.9 47 72.3
CsaV3_2G016360 Cucumis sativus L. HOM05D008250 ORTHO05D010361 1.1e-10 69.3 37 86.5
Glyma.17G159100 Glycine max HOM05D008250 ORTHO05D010361 1.4e-10 68.9 37 81.1
SEGI_25339 Sequoiadendron giganteum HOM05D008250 ORTHO05D010361 1.4e-10 68.9 43 72.1
Lalb_Chr05g0230301 Lupinus albus HOM05D008250 ORTHO05D010361 1.8e-10 68.6 57 61.4
Lj4g0012638 Lotus japonicus HOM05D008250 ORTHO05D010361 5.2e-10 67.0 37 78.4
TPR.G3717 Trifolium pratense HOM05D008250 ORTHO05D010361 1.2e-09 65.9 37 73.0
arahy.Tifrunner.gnm1.ann1.IKZ63P Arachis hypogaea HOM05D008250 ORTHO05D010361 1.5e-09 65.5 34 82.4
arahy.Tifrunner.gnm1.ann1.L5XXFX Arachis hypogaea HOM05D008250 ORTHO05D010361 1.5e-09 65.5 34 82.4
Aa31LG1G16230 Aethionema arabicum HOM05D008250 ORTHO05D010361 4.4e-09 63.9 42 78.6
CDE02G1785 Ceratophyllum demersum HOM05D008250 ORTHO05D010361 4.4e-09 63.9 45 64.4
Psat4g080920 Pisum sativum HOM05D008250 ORTHO05D010361 4.4e-09 63.9 36 72.2
Medtr4g097410 Medicago truncatula HOM05D008250 ORTHO05D010361 7.5e-09 63.2 36 72.2
CSS0002791 Camellia sinensis var. sinensis HOM05D008250 ORTHO05D010361 5.4e-07 57.0 36 72.2
CSS0014718 Camellia sinensis var. sinensis HOM05D008250 ORTHO05D010361 5.4e-07 57.0 36 72.2
SGA_v2.0_scaffold15G07489 Striga asiatica HOM05D008250 ORTHO05D010361 5.4e-07 57.0 31 80.6
Haze_15258 Corylus avellana HOM05D008250 ORTHO05D010361 1.6e-06 55.5 30 83.3


User provided reference genes

Program Settings